Wall clock time and date at job start Tue Mar 31 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47085 * 299.99998 * 3 2 1 6 6 H 1.48504 * 109.47009 * 59.99923 * 3 2 1 7 7 C 1.38805 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00685 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64893 * 359.97438 * 9 7 2 11 11 C 1.54903 * 104.83221 * 155.90492 * 10 9 7 12 12 C 1.55147 * 101.58580 * 37.00697 * 11 10 9 13 13 O 1.42904 * 110.72165 * 83.03862 * 12 11 10 14 14 C 1.53002 * 110.72142 * 206.13324 * 12 11 10 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 12 17 17 O 1.21615 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.47096 * 120.00186 * 180.02562 * 16 15 14 19 19 C 1.32613 * 124.62076 * 179.70281 * 18 16 15 20 20 C 1.51115 * 110.75348 * 179.84611 * 19 18 16 21 21 C 1.54570 * 104.90443 * 343.80143 * 20 19 18 22 22 C 1.51110 * 124.61896 * 0.02562 * 18 16 15 23 23 C 1.47021 * 125.64833 * 180.02562 * 9 7 2 24 24 H 0.96994 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.36417 * 37.06324 * 10 9 7 26 26 H 1.09004 * 110.45140 * 274.79021 * 10 9 7 27 27 H 1.09003 * 111.00082 * 278.92857 * 11 10 9 28 28 H 1.08997 * 111.00208 * 155.08272 * 11 10 9 29 29 H 0.96703 * 113.99997 * 182.44428 * 13 12 11 30 30 H 1.09004 * 109.46930 * 60.00018 * 14 12 11 31 31 H 1.09000 * 109.47312 * 299.99962 * 14 12 11 32 32 H 0.96999 * 120.00080 * 0.02562 * 15 14 12 33 33 H 1.07990 * 124.62457 * 359.97438 * 19 18 16 34 34 H 1.09006 * 110.51454 * 224.85168 * 20 19 18 35 35 H 1.09004 * 110.24917 * 102.62538 * 20 19 18 36 36 H 1.09006 * 110.98306 * 266.70990 * 21 20 19 37 37 H 1.08999 * 111.01731 * 142.93346 * 21 20 19 38 38 H 1.09005 * 110.36721 * 315.43523 * 22 18 16 39 39 H 1.08998 * 110.36750 * 77.65004 * 22 18 16 40 40 H 1.09001 * 109.88689 * 61.61252 * 23 9 7 41 41 H 1.08998 * 109.88896 * 300.44250 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9323 -0.6112 12 6 0.7785 -4.7524 -0.0272 13 8 0.4731 -5.2091 1.2920 14 6 1.1226 -5.9312 -0.9398 15 7 2.2389 -6.6852 -0.3638 16 6 2.7160 -7.7738 -0.9993 17 8 2.2201 -8.1299 -2.0511 18 6 3.8365 -8.5311 -0.4208 19 6 4.3728 -9.6157 -0.9636 20 6 5.5052 -10.1377 -0.1100 21 6 5.8590 -8.9697 0.8387 22 6 4.5286 -8.1833 0.8767 23 6 1.9320 -3.7274 -0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5997 -1.7588 -0.6146 26 1 -0.5281 -2.4863 1.0186 27 1 -0.3531 -3.8980 -1.6996 28 1 -1.3590 -4.3328 -0.2770 29 1 1.1932 -5.6954 1.7165 30 1 1.4060 -5.5581 -1.9240 31 1 0.2540 -6.5830 -1.0346 32 1 2.6342 -6.4013 0.4753 33 1 4.0463 -10.0635 -1.8905 34 1 6.3636 -10.3958 -0.7303 35 1 5.1772 -11.0054 0.4624 36 1 6.6618 -8.3597 0.4244 37 1 6.1232 -9.3377 1.8301 38 1 4.7229 -7.1119 0.9277 39 1 3.9232 -8.4993 1.7262 40 1 2.5288 -3.8642 0.9012 41 1 2.5580 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278771782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:59 Heat of formation + Delta-G solvation = -45.584873 kcal Electronic energy + Delta-G solvation = -22159.516394 eV Core-core repulsion = 18847.183954 eV Total energy + Delta-G solvation = -3312.332440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19856 -38.77477 -37.70431 -35.18814 -34.14167 -32.12907 -30.12414 -29.41408 -28.81017 -27.85119 -25.68599 -23.78046 -22.12442 -21.01559 -20.24271 -19.94758 -19.07649 -17.53026 -16.96478 -16.33757 -15.99413 -15.69632 -15.13023 -14.75152 -14.46207 -14.12021 -13.78886 -13.23974 -13.13128 -13.01641 -12.90009 -12.42963 -12.20598 -12.10142 -11.94228 -11.59640 -11.54453 -11.46968 -11.04777 -10.89982 -10.77927 -10.37762 -10.13814 -10.12402 -9.82154 -9.72386 -9.42815 -9.26515 -9.00209 -8.66857 -6.87167 -5.67698 -3.10167 1.20945 3.15079 3.22668 3.38390 3.43469 3.46273 4.21118 4.26981 4.44257 4.46140 4.67321 4.75710 4.88762 4.99802 5.17933 5.32613 5.36222 5.40961 5.47838 5.49092 5.50438 5.62426 5.65005 5.84267 5.87574 5.96629 6.07743 6.23003 6.29029 6.33456 6.40782 6.49131 6.59370 6.62874 7.43707 7.55033 7.59789 7.82777 7.90552 8.17772 8.32930 9.18832 9.79244 10.43563 11.36114 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.003791 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.236020 B = 7384.761243 C = 8022.452041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.542 6.542 14 C 0.104 3.896 15 N -0.720 5.720 16 C 0.565 3.435 17 O -0.544 6.544 18 C -0.192 4.192 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.123 4.123 22 C -0.094 4.094 23 C 0.117 3.883 24 H 0.252 0.748 25 H 0.108 0.892 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.362 0.638 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.398 0.602 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.023 0.977 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.438 -18.474 1.875 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.064 3.936 13 O -0.346 6.346 14 C -0.020 4.020 15 N -0.372 5.372 16 C 0.353 3.647 17 O -0.423 6.423 18 C -0.195 4.195 19 C -0.096 4.096 20 C -0.144 4.144 21 C -0.160 4.160 22 C -0.131 4.131 23 C -0.010 4.010 24 H 0.063 0.937 25 H 0.126 0.874 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.209 0.791 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.455 -18.158 1.001 19.655 hybrid contribution 1.185 0.693 0.576 1.489 sum 8.640 -17.465 1.577 19.549 Atomic orbital electron populations 1.69802 1.04899 1.24758 1.57377 1.24799 0.95743 0.97761 1.02254 0.85987 0.78604 0.83522 0.77291 1.20546 1.21669 1.21696 1.19108 0.90496 0.82371 1.43361 0.90470 1.44431 1.02008 0.99357 1.86835 1.21937 0.84442 0.91837 0.98658 1.23049 0.95544 0.98288 0.99822 1.22579 0.97918 0.91099 0.82045 1.86643 1.43050 1.75929 1.29020 1.22101 0.88879 0.93141 0.97877 1.45872 1.36067 1.28745 1.26508 1.17965 0.82493 0.80140 0.84099 1.90791 1.60127 1.68648 1.22736 1.21858 0.99187 0.99301 0.99150 1.24038 0.94173 0.93613 0.97772 1.21480 0.96894 0.98864 0.97157 1.22424 0.97136 0.96564 0.99915 1.21282 0.95756 1.01246 0.94834 1.21919 0.93624 0.87172 0.98239 0.93683 0.87413 0.96379 0.90538 0.91040 0.79143 0.90209 0.90687 0.76736 0.84487 0.90224 0.89707 0.90705 0.90458 0.90572 0.90090 0.95972 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.28 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 10 C 0.16 3.85 5.88 -2.53 -0.01 3.83 16 11 C -0.13 -2.48 6.26 -24.59 -0.15 -2.63 16 12 C 0.11 1.82 0.92 -88.79 -0.08 1.74 16 13 O -0.54 -9.04 13.09 -35.23 -0.46 -9.50 16 14 C 0.10 1.58 4.74 -4.04 -0.02 1.56 16 15 N -0.72 -9.33 5.19 -61.49 -0.32 -9.65 16 16 C 0.56 7.95 7.79 -12.67 -0.10 7.85 16 17 O -0.54 -9.65 16.77 5.26 0.09 -9.57 16 18 C -0.19 -2.07 6.09 -102.73 -0.63 -2.69 16 19 C -0.08 -0.72 10.43 -36.01 -0.38 -1.10 16 20 C -0.11 -0.70 6.80 -26.86 -0.18 -0.89 16 21 C -0.12 -0.80 7.17 -25.07 -0.18 -0.98 16 22 C -0.09 -0.75 6.02 -26.85 -0.16 -0.91 16 23 C 0.12 2.38 6.30 -3.06 -0.02 2.36 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.36 4.47 7.78 45.56 0.35 4.82 16 30 H 0.08 1.29 8.06 -51.93 -0.42 0.88 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.40 4.25 6.27 -40.82 -0.26 4.00 16 33 H 0.14 1.33 8.03 -52.49 -0.42 0.90 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.59 7.83 -51.93 -0.41 0.19 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 41 H 0.03 0.62 7.76 -51.93 -0.40 0.21 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -33.50 332.59 -8.51 -42.00 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.62 Total: 5.66 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.16 Total: 1.33 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.34 Total: -51.93 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.37 Total: -19.07 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.50 -8.51 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278771782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.581 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds