Wall clock time and date at job start Tue Mar 31 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47085 * 299.99998 * 3 2 1 6 6 H 1.48504 * 109.47009 * 59.99923 * 3 2 1 7 7 C 1.38805 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00685 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64893 * 359.97438 * 9 7 2 11 11 C 1.54903 * 104.83221 * 155.90492 * 10 9 7 12 12 C 1.55147 * 101.58580 * 37.00697 * 11 10 9 13 13 O 1.42904 * 110.72165 * 83.03862 * 12 11 10 14 14 C 1.53002 * 110.72142 * 206.13324 * 12 11 10 15 15 N 1.46506 * 109.47035 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 12 17 17 O 1.21615 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.47096 * 120.00186 * 180.02562 * 16 15 14 19 19 C 1.32613 * 124.62076 * 179.70281 * 18 16 15 20 20 C 1.51115 * 110.75348 * 179.84611 * 19 18 16 21 21 C 1.54570 * 104.90443 * 343.80143 * 20 19 18 22 22 C 1.51110 * 124.61896 * 0.02562 * 18 16 15 23 23 C 1.47021 * 125.64833 * 180.02562 * 9 7 2 24 24 H 0.96994 * 120.00099 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.36417 * 37.06324 * 10 9 7 26 26 H 1.09004 * 110.45140 * 274.79021 * 10 9 7 27 27 H 1.09003 * 111.00082 * 278.92857 * 11 10 9 28 28 H 1.08997 * 111.00208 * 155.08272 * 11 10 9 29 29 H 0.96703 * 113.99997 * 182.44428 * 13 12 11 30 30 H 1.09004 * 109.46930 * 60.00018 * 14 12 11 31 31 H 1.09000 * 109.47312 * 299.99962 * 14 12 11 32 32 H 0.96999 * 120.00080 * 0.02562 * 15 14 12 33 33 H 1.07990 * 124.62457 * 359.97438 * 19 18 16 34 34 H 1.09006 * 110.51454 * 224.85168 * 20 19 18 35 35 H 1.09004 * 110.24917 * 102.62538 * 20 19 18 36 36 H 1.09006 * 110.98306 * 266.70990 * 21 20 19 37 37 H 1.08999 * 111.01731 * 142.93346 * 21 20 19 38 38 H 1.09005 * 110.36721 * 315.43523 * 22 18 16 39 39 H 1.08998 * 110.36750 * 77.65004 * 22 18 16 40 40 H 1.09001 * 109.88689 * 61.61252 * 23 9 7 41 41 H 1.08998 * 109.88896 * 300.44250 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9323 -0.6112 12 6 0.7785 -4.7524 -0.0272 13 8 0.4731 -5.2091 1.2920 14 6 1.1226 -5.9312 -0.9398 15 7 2.2389 -6.6852 -0.3638 16 6 2.7160 -7.7738 -0.9993 17 8 2.2201 -8.1299 -2.0511 18 6 3.8365 -8.5311 -0.4208 19 6 4.3728 -9.6157 -0.9636 20 6 5.5052 -10.1377 -0.1100 21 6 5.8590 -8.9697 0.8387 22 6 4.5286 -8.1833 0.8767 23 6 1.9320 -3.7274 -0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5997 -1.7588 -0.6146 26 1 -0.5281 -2.4863 1.0186 27 1 -0.3531 -3.8980 -1.6996 28 1 -1.3590 -4.3328 -0.2770 29 1 1.1932 -5.6954 1.7165 30 1 1.4060 -5.5581 -1.9240 31 1 0.2540 -6.5830 -1.0346 32 1 2.6342 -6.4013 0.4753 33 1 4.0463 -10.0635 -1.8905 34 1 6.3636 -10.3958 -0.7303 35 1 5.1772 -11.0054 0.4624 36 1 6.6618 -8.3597 0.4244 37 1 6.1232 -9.3377 1.8301 38 1 4.7229 -7.1119 0.9277 39 1 3.9232 -8.4993 1.7262 40 1 2.5288 -3.8642 0.9012 41 1 2.5580 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278771782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:58 Heat of formation + Delta-G solvation = -70.159805 kcal Electronic energy + Delta-G solvation = -22160.582043 eV Core-core repulsion = 18847.183954 eV Total energy + Delta-G solvation = -3313.398089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29676 -40.10143 -38.59483 -36.87147 -35.36435 -34.02760 -31.54878 -30.64637 -29.73533 -29.00513 -27.40688 -25.40978 -23.19221 -22.17807 -21.56141 -21.37432 -20.13728 -18.92163 -18.41236 -17.64296 -17.01791 -16.76759 -16.62499 -16.15472 -15.78054 -15.55852 -15.40739 -14.79777 -14.49913 -13.97979 -13.82662 -13.76669 -13.55171 -13.32221 -12.95891 -12.92960 -12.80335 -12.58519 -12.40909 -12.09943 -12.05824 -11.99345 -11.98758 -11.79741 -11.62671 -11.09986 -10.92054 -10.76315 -10.30458 -9.83579 -8.92636 -7.79121 -5.24551 0.36445 1.46790 1.47894 1.58156 2.08332 2.23116 2.47868 3.11250 3.30369 3.39221 3.53062 3.65617 3.68905 3.88732 3.93433 4.09500 4.23119 4.32651 4.45259 4.57225 4.62044 4.75960 4.81435 4.83855 4.91030 4.92405 4.96109 4.99359 5.05237 5.19940 5.24656 5.36948 5.41357 5.44856 5.54730 5.59162 5.77678 6.27393 6.42147 6.73426 7.07821 7.12026 7.74504 8.38275 9.23177 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.003791 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.236020 B = 7384.761243 C = 8022.452041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.160 3.840 11 C -0.121 4.121 12 C 0.126 3.874 13 O -0.552 6.552 14 C 0.118 3.882 15 N -0.711 5.711 16 C 0.561 3.439 17 O -0.589 6.589 18 C -0.216 4.216 19 C -0.068 4.068 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.092 4.092 23 C 0.114 3.886 24 H 0.248 0.752 25 H 0.076 0.924 26 H -0.014 1.014 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.383 0.617 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.410 0.590 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.035 0.965 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.402 -20.062 2.676 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.035 3.965 11 C -0.159 4.159 12 C 0.084 3.916 13 O -0.359 6.359 14 C -0.007 4.007 15 N -0.363 5.363 16 C 0.352 3.648 17 O -0.471 6.471 18 C -0.219 4.219 19 C -0.088 4.088 20 C -0.140 4.140 21 C -0.157 4.157 22 C -0.129 4.129 23 C -0.012 4.012 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.004 0.996 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.463 -19.778 1.839 22.002 hybrid contribution 0.593 1.114 0.334 1.305 sum 10.056 -18.664 2.172 21.312 Atomic orbital electron populations 1.70055 1.06307 1.25067 1.58418 1.25670 0.96646 1.01113 1.02529 0.84953 0.78107 0.79157 0.76739 1.18959 1.21775 1.21926 1.19503 0.91069 0.83628 1.42776 0.89914 1.44720 1.02590 1.00773 1.86850 1.21651 0.84200 0.94140 0.96497 1.22909 0.97315 0.95451 1.00272 1.22200 0.95509 0.90989 0.82859 1.86608 1.44365 1.76251 1.28687 1.21785 0.89797 0.92348 0.96763 1.45730 1.35384 1.28316 1.26833 1.18516 0.82815 0.80008 0.83498 1.90765 1.61767 1.69835 1.24749 1.21874 0.99066 0.99926 1.01005 1.24361 0.94262 0.92751 0.97381 1.21549 0.96080 0.99350 0.97003 1.22459 0.96192 0.96173 1.00910 1.21329 0.96411 1.01584 0.93544 1.22110 0.94709 0.85614 0.98733 0.94256 0.90641 0.99621 0.89541 0.89474 0.76729 0.91196 0.90382 0.75260 0.85367 0.88811 0.88022 0.90729 0.88550 0.90580 0.88930 0.94697 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.04 10.09 21.65 0.22 -56.82 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 3 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -13.53 10.27 84.03 0.86 -12.66 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -32.24 3.39 -691.99 -2.35 -34.58 16 10 C 0.16 8.12 5.88 86.85 0.51 8.63 16 11 C -0.12 -4.63 6.26 31.98 0.20 -4.43 16 12 C 0.13 4.21 0.92 -9.61 -0.01 4.20 16 13 O -0.55 -17.35 13.09 -148.98 -1.95 -19.30 16 14 C 0.12 3.41 4.74 86.38 0.41 3.82 16 15 N -0.71 -17.27 5.19 -466.69 -2.42 -19.69 16 16 C 0.56 15.24 7.79 86.57 0.67 15.92 16 17 O -0.59 -20.83 16.77 -4.08 -0.07 -20.90 16 18 C -0.22 -4.29 6.09 -18.57 -0.11 -4.40 16 19 C -0.07 -1.16 10.43 24.66 0.26 -0.91 16 20 C -0.10 -1.03 6.80 30.51 0.21 -0.82 16 21 C -0.12 -1.15 7.17 31.67 0.23 -0.93 16 22 C -0.09 -1.21 6.02 30.52 0.18 -1.02 16 23 C 0.11 4.52 6.30 86.73 0.55 5.06 16 24 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H 0.09 3.14 8.05 -2.39 -0.02 3.12 16 28 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.38 8.42 7.78 -74.05 -0.58 7.84 16 30 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.41 7.85 6.27 -92.71 -0.58 7.27 16 33 H 0.13 2.38 8.03 -2.92 -0.02 2.36 16 34 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.99 7.83 -2.38 -0.02 0.97 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 1.31 8.07 -2.39 -0.02 1.29 16 41 H 0.03 1.34 7.76 -2.39 -0.02 1.33 16 Total: -1.00 -73.88 332.59 -0.24 -74.12 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.12 Total: 20.41 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.42 Total: 9.10 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.55 Total: -111.09 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -2.02 Total: -40.19 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.88 -0.24 -74.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278771782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.960 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds