Wall clock time and date at job start Tue Mar 31 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48494 * 109.47587 * 264.54033 * 3 2 1 5 5 H 1.48511 * 109.47079 * 24.54237 * 3 2 1 6 6 H 1.48498 * 109.47171 * 144.53766 * 3 2 1 7 7 C 1.38820 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 337.63147 * 7 2 1 9 9 N 1.36932 * 119.99629 * 157.62713 * 7 2 1 10 10 C 1.47429 * 125.65308 * 341.48529 * 9 7 2 11 11 C 1.54913 * 104.83080 * 204.16295 * 10 9 7 12 12 C 1.55157 * 101.58305 * 322.98900 * 11 10 9 13 13 O 1.42907 * 110.87260 * 277.07105 * 12 11 10 14 14 C 1.52999 * 110.72364 * 153.86730 * 12 11 10 15 15 N 1.46498 * 109.47412 * 190.02355 * 14 12 11 16 16 C 1.34767 * 120.00185 * 179.72611 * 15 14 12 17 17 O 1.21617 * 120.00020 * 0.27183 * 16 15 14 18 18 C 1.47097 * 120.00470 * 180.27679 * 16 15 14 19 19 C 1.32616 * 124.62445 * 179.69734 * 18 16 15 20 20 C 1.51111 * 110.75652 * 179.84254 * 19 18 16 21 21 C 1.54574 * 104.90724 * 343.80388 * 20 19 18 22 22 C 1.51115 * 124.61581 * 359.97438 * 18 16 15 23 23 C 1.47023 * 125.64486 * 161.52307 * 9 7 2 24 24 H 0.97006 * 120.00507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.36276 * 322.99843 * 10 9 7 26 26 H 1.08994 * 110.36662 * 85.32332 * 10 9 7 27 27 H 1.09006 * 111.00332 * 204.91688 * 11 10 9 28 28 H 1.08999 * 111.00524 * 81.06354 * 11 10 9 29 29 H 0.96696 * 114.00037 * 177.45418 * 13 12 11 30 30 H 1.09003 * 109.46713 * 70.02050 * 14 12 11 31 31 H 1.08996 * 109.46687 * 310.02717 * 14 12 11 32 32 H 0.97002 * 119.99802 * 359.97438 * 15 14 12 33 33 H 1.07993 * 124.62043 * 0.02562 * 19 18 16 34 34 H 1.09002 * 110.51545 * 224.84789 * 20 19 18 35 35 H 1.08998 * 110.24608 * 102.62098 * 20 19 18 36 36 H 1.09004 * 110.98535 * 266.71545 * 21 20 19 37 37 H 1.08991 * 110.98521 * 142.91078 * 21 20 19 38 38 H 1.08998 * 110.36719 * 315.43753 * 22 18 16 39 39 H 1.09001 * 110.36705 * 77.76083 * 22 18 16 40 40 H 1.08996 * 109.88528 * 59.48651 * 23 9 7 41 41 H 1.09001 * 109.88192 * 298.32353 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6131 1.9798 -1.3936 5 1 1.3947 2.6832 0.5816 6 1 3.4852 1.4761 0.8123 7 6 2.0102 -1.2022 -0.0005 8 1 1.5311 -2.1025 0.3550 9 7 3.3022 -1.2466 -0.4520 10 6 3.9505 -0.2321 -1.3027 11 6 5.0952 -0.9895 -2.0209 12 6 5.5798 -1.9525 -0.9049 13 8 6.4902 -1.2926 -0.0230 14 6 6.2242 -3.2014 -1.5097 15 7 6.4534 -4.1921 -0.4551 16 6 7.0106 -5.3814 -0.7573 17 8 7.3278 -5.6303 -1.9047 18 6 7.2352 -6.3785 0.3006 19 6 7.7698 -7.5764 0.1057 20 6 7.8580 -8.3414 1.4059 21 6 7.6739 -7.2740 2.5086 22 6 6.8825 -6.1798 1.7565 23 6 4.2724 -2.3145 -0.1691 24 1 -0.4851 0.8401 0.0004 25 1 3.2413 0.1620 -2.0306 26 1 4.3547 0.5742 -0.6906 27 1 5.8898 -0.3054 -2.3187 28 1 4.7178 -1.5450 -2.8794 29 1 6.7913 -1.8414 0.7141 30 1 7.1756 -2.9330 -1.9691 31 1 5.5615 -3.6222 -2.2658 32 1 6.2007 -3.9934 0.4602 33 1 8.1000 -7.9526 -0.8512 34 1 8.8320 -8.8214 1.5014 35 1 7.0626 -9.0847 1.4609 36 1 8.6373 -6.8941 2.8490 37 1 7.0955 -7.6704 3.3430 38 1 7.1931 -5.1897 2.0903 39 1 5.8116 -6.3139 1.9092 40 1 3.8921 -3.2677 -0.5362 41 1 4.4553 -2.3745 0.9038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278771783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:02 Heat of formation + Delta-G solvation = -44.019939 kcal Electronic energy + Delta-G solvation = -22272.161457 eV Core-core repulsion = 18959.896878 eV Total energy + Delta-G solvation = -3312.264579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.27577 -38.99452 -37.78048 -35.41254 -34.30804 -32.25820 -30.40926 -29.64615 -28.91023 -28.20342 -26.06664 -23.65334 -22.15090 -21.17576 -20.85323 -20.04243 -19.11523 -17.54710 -17.07206 -16.32035 -16.12379 -15.79290 -15.33393 -15.09749 -14.54798 -14.31090 -14.06852 -13.53591 -13.17298 -13.08873 -12.98949 -12.63015 -12.29121 -12.14543 -11.96441 -11.89748 -11.67381 -11.54785 -11.48386 -11.20305 -11.03142 -10.78060 -10.21745 -10.08872 -9.95516 -9.72290 -9.44560 -9.30574 -9.06253 -8.71445 -7.08590 -5.97043 -3.28295 1.18228 3.08155 3.18748 3.35266 3.48940 3.53593 4.19094 4.24595 4.26327 4.53572 4.57766 4.66809 4.77402 4.95715 4.97799 5.05979 5.12589 5.31364 5.37488 5.40273 5.46145 5.48075 5.62493 5.63681 5.77011 5.84106 5.85552 6.04201 6.05100 6.15586 6.25831 6.28015 6.36011 6.38378 6.60848 6.73135 7.38064 7.65467 7.74067 8.11939 8.27815 8.79216 9.65785 10.13380 11.18740 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.004010 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.888753 B = 6981.244576 C = 7434.027524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.605 5.605 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.545 6.545 14 C 0.104 3.896 15 N -0.722 5.722 16 C 0.566 3.434 17 O -0.544 6.544 18 C -0.193 4.193 19 C -0.075 4.075 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.094 4.094 23 C 0.115 3.885 24 H 0.264 0.736 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.369 0.631 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.997 -13.060 3.115 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.332 5.332 10 C -0.012 4.012 11 C -0.153 4.153 12 C 0.062 3.938 13 O -0.349 6.349 14 C -0.020 4.020 15 N -0.374 5.374 16 C 0.354 3.646 17 O -0.423 6.423 18 C -0.196 4.196 19 C -0.095 4.095 20 C -0.144 4.144 21 C -0.160 4.160 22 C -0.131 4.131 23 C -0.011 4.011 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.215 0.785 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 16.855 -12.620 1.917 21.143 hybrid contribution 0.302 0.654 0.883 1.140 sum 17.157 -11.965 2.800 21.103 Atomic orbital electron populations 1.69839 1.05563 1.26682 1.53009 1.24985 0.95153 0.97454 0.99910 0.86979 0.79214 0.84531 0.77948 1.21138 1.23034 1.20036 1.18616 0.84151 0.95480 1.38997 0.89078 1.44685 1.09598 1.21974 1.56900 1.21977 0.93197 0.92669 0.93325 1.22750 0.98623 0.98003 0.95875 1.22525 0.88702 0.90954 0.91592 1.86599 1.64163 1.43187 1.40988 1.22055 1.01543 0.87742 0.90639 1.45885 1.63120 1.16076 1.12282 1.17966 0.77161 0.81493 0.87952 1.90792 1.51695 1.78745 1.21070 1.21845 1.05646 0.96417 0.95666 1.24043 0.92691 0.93495 0.99243 1.21485 1.02776 0.98293 0.91886 1.22422 1.00672 0.95421 0.97498 1.21282 1.01147 1.00062 0.90602 1.21993 0.88649 0.93474 0.97027 0.92645 0.92024 0.94987 0.90290 0.89502 0.78451 0.90479 0.90020 0.76464 0.84487 0.90242 0.89603 0.90807 0.90391 0.90741 0.89878 0.94042 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 2 C 0.02 0.70 5.43 -17.43 -0.09 0.60 16 3 Si 0.88 22.83 24.27 -169.99 -4.13 18.70 16 4 H -0.28 -7.06 6.48 56.52 0.37 -6.70 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.27 -7.11 6.66 56.52 0.38 -6.73 16 7 C -0.25 -6.96 10.57 -15.06 -0.16 -7.12 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.60 -14.56 3.21 -170.07 -0.55 -15.10 16 10 C 0.11 2.49 4.69 -2.52 -0.01 2.48 16 11 C -0.11 -1.93 6.26 -24.58 -0.15 -2.09 16 12 C 0.10 1.62 0.93 -88.78 -0.08 1.54 16 13 O -0.54 -8.29 13.10 -35.23 -0.46 -8.75 16 14 C 0.10 1.43 4.80 -4.04 -0.02 1.41 16 15 N -0.72 -8.73 5.12 -61.50 -0.32 -9.05 16 16 C 0.57 7.60 7.79 -12.67 -0.10 7.50 16 17 O -0.54 -9.25 16.77 5.26 0.09 -9.16 16 18 C -0.19 -2.01 6.09 -102.73 -0.63 -2.64 16 19 C -0.08 -0.69 10.43 -36.01 -0.38 -1.07 16 20 C -0.11 -0.69 6.80 -26.85 -0.18 -0.88 16 21 C -0.12 -0.77 7.16 -25.08 -0.18 -0.95 16 22 C -0.09 -0.74 6.02 -26.85 -0.16 -0.90 16 23 C 0.11 2.16 5.76 -3.06 -0.02 2.14 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.06 1.43 6.63 -51.93 -0.34 1.09 16 26 H 0.03 0.76 5.58 -51.93 -0.29 0.47 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.35 7.96 -51.93 -0.41 0.94 16 29 H 0.37 4.11 8.44 45.56 0.38 4.49 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 32 H 0.40 4.06 6.48 -40.82 -0.26 3.79 16 33 H 0.14 1.28 8.03 -52.49 -0.42 0.86 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.78 7.82 -51.93 -0.41 0.37 16 41 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -34.67 327.66 -7.39 -42.06 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.58 Total: 3.53 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.16 Total: 0.04 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.37 Total: -17.91 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.67 -7.39 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278771783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.961 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds