Wall clock time and date at job start Tue Mar 31 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48494 * 109.47587 * 264.54033 * 3 2 1 5 5 H 1.48511 * 109.47079 * 24.54237 * 3 2 1 6 6 H 1.48498 * 109.47171 * 144.53766 * 3 2 1 7 7 C 1.38820 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 337.63147 * 7 2 1 9 9 N 1.36932 * 119.99629 * 157.62713 * 7 2 1 10 10 C 1.47429 * 125.65308 * 341.48529 * 9 7 2 11 11 C 1.54913 * 104.83080 * 204.16295 * 10 9 7 12 12 C 1.55157 * 101.58305 * 322.98900 * 11 10 9 13 13 O 1.42907 * 110.87260 * 277.07105 * 12 11 10 14 14 C 1.52999 * 110.72364 * 153.86730 * 12 11 10 15 15 N 1.46498 * 109.47412 * 190.02355 * 14 12 11 16 16 C 1.34767 * 120.00185 * 179.72611 * 15 14 12 17 17 O 1.21617 * 120.00020 * 0.27183 * 16 15 14 18 18 C 1.47097 * 120.00470 * 180.27679 * 16 15 14 19 19 C 1.32616 * 124.62445 * 179.69734 * 18 16 15 20 20 C 1.51111 * 110.75652 * 179.84254 * 19 18 16 21 21 C 1.54574 * 104.90724 * 343.80388 * 20 19 18 22 22 C 1.51115 * 124.61581 * 359.97438 * 18 16 15 23 23 C 1.47023 * 125.64486 * 161.52307 * 9 7 2 24 24 H 0.97006 * 120.00507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.36276 * 322.99843 * 10 9 7 26 26 H 1.08994 * 110.36662 * 85.32332 * 10 9 7 27 27 H 1.09006 * 111.00332 * 204.91688 * 11 10 9 28 28 H 1.08999 * 111.00524 * 81.06354 * 11 10 9 29 29 H 0.96696 * 114.00037 * 177.45418 * 13 12 11 30 30 H 1.09003 * 109.46713 * 70.02050 * 14 12 11 31 31 H 1.08996 * 109.46687 * 310.02717 * 14 12 11 32 32 H 0.97002 * 119.99802 * 359.97438 * 15 14 12 33 33 H 1.07993 * 124.62043 * 0.02562 * 19 18 16 34 34 H 1.09002 * 110.51545 * 224.84789 * 20 19 18 35 35 H 1.08998 * 110.24608 * 102.62098 * 20 19 18 36 36 H 1.09004 * 110.98535 * 266.71545 * 21 20 19 37 37 H 1.08991 * 110.98521 * 142.91078 * 21 20 19 38 38 H 1.08998 * 110.36719 * 315.43753 * 22 18 16 39 39 H 1.09001 * 110.36705 * 77.76083 * 22 18 16 40 40 H 1.08996 * 109.88528 * 59.48651 * 23 9 7 41 41 H 1.09001 * 109.88192 * 298.32353 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6131 1.9798 -1.3936 5 1 1.3947 2.6832 0.5816 6 1 3.4852 1.4761 0.8123 7 6 2.0102 -1.2022 -0.0005 8 1 1.5311 -2.1025 0.3550 9 7 3.3022 -1.2466 -0.4520 10 6 3.9505 -0.2321 -1.3027 11 6 5.0952 -0.9895 -2.0209 12 6 5.5798 -1.9525 -0.9049 13 8 6.4902 -1.2926 -0.0230 14 6 6.2242 -3.2014 -1.5097 15 7 6.4534 -4.1921 -0.4551 16 6 7.0106 -5.3814 -0.7573 17 8 7.3278 -5.6303 -1.9047 18 6 7.2352 -6.3785 0.3006 19 6 7.7698 -7.5764 0.1057 20 6 7.8580 -8.3414 1.4059 21 6 7.6739 -7.2740 2.5086 22 6 6.8825 -6.1798 1.7565 23 6 4.2724 -2.3145 -0.1691 24 1 -0.4851 0.8401 0.0004 25 1 3.2413 0.1620 -2.0306 26 1 4.3547 0.5742 -0.6906 27 1 5.8898 -0.3054 -2.3187 28 1 4.7178 -1.5450 -2.8794 29 1 6.7913 -1.8414 0.7141 30 1 7.1756 -2.9330 -1.9691 31 1 5.5615 -3.6222 -2.2658 32 1 6.2007 -3.9934 0.4602 33 1 8.1000 -7.9526 -0.8512 34 1 8.8320 -8.8214 1.5014 35 1 7.0626 -9.0847 1.4609 36 1 8.6373 -6.8941 2.8490 37 1 7.0955 -7.6704 3.3430 38 1 7.1931 -5.1897 2.0903 39 1 5.8116 -6.3139 1.9092 40 1 3.8921 -3.2677 -0.5362 41 1 4.4553 -2.3745 0.9038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278771783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:01 Heat of formation + Delta-G solvation = -71.173891 kcal Electronic energy + Delta-G solvation = -22273.338940 eV Core-core repulsion = 18959.896878 eV Total energy + Delta-G solvation = -3313.442063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32934 -40.22693 -38.61081 -36.97275 -35.42512 -34.25546 -31.90009 -30.71519 -29.87889 -29.17915 -27.59948 -25.22915 -23.26312 -22.67310 -21.63842 -21.34701 -20.10485 -18.97279 -18.39235 -17.63720 -17.25021 -17.00596 -16.68172 -16.09189 -15.97744 -15.66536 -15.49845 -15.20425 -14.54825 -14.17689 -13.89344 -13.79788 -13.58582 -13.47351 -13.32879 -12.98476 -12.93413 -12.77234 -12.58692 -12.20970 -12.07214 -12.04796 -11.98832 -11.85461 -11.48857 -11.11596 -10.98461 -10.84424 -10.29838 -9.83746 -9.10196 -8.21039 -5.48057 0.36461 1.29346 1.38144 1.47451 2.08725 2.23793 2.39160 2.94788 3.12409 3.16308 3.48508 3.57303 3.65870 3.70560 3.73048 4.08926 4.22554 4.31685 4.32501 4.34023 4.58282 4.69410 4.73475 4.80229 4.81987 4.83954 4.90651 4.91150 4.98887 5.01769 5.13245 5.19614 5.25619 5.36711 5.40628 5.55023 5.62719 6.06712 6.42253 6.70041 6.71721 7.11939 7.49711 8.05743 8.98528 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026312 B = 0.004010 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.888753 B = 6981.244576 C = 7434.027524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.032 4.032 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.307 1.307 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.062 0.938 9 N -0.624 5.624 10 C 0.105 3.895 11 C -0.108 4.108 12 C 0.124 3.876 13 O -0.552 6.552 14 C 0.116 3.884 15 N -0.713 5.713 16 C 0.562 3.438 17 O -0.587 6.587 18 C -0.216 4.216 19 C -0.068 4.068 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.093 4.093 23 C 0.110 3.890 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.388 0.612 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.411 0.589 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.500 -13.619 3.790 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.235 1.235 6 H -0.199 1.199 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.351 5.351 10 C -0.020 4.020 11 C -0.146 4.146 12 C 0.082 3.918 13 O -0.360 6.360 14 C -0.009 4.009 15 N -0.365 5.365 16 C 0.352 3.648 17 O -0.470 6.470 18 C -0.219 4.219 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.237 0.763 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.403 -13.190 2.623 23.608 hybrid contribution -0.451 0.689 0.678 1.066 sum 18.952 -12.501 3.301 22.943 Atomic orbital electron populations 1.69955 1.07107 1.27331 1.55633 1.25583 0.95745 1.00575 1.00823 0.85977 0.77637 0.80473 0.78542 1.19577 1.23521 1.19882 1.18584 0.86115 0.94415 1.37449 0.91980 1.44790 1.09249 1.23629 1.57438 1.22039 0.94314 0.92712 0.92885 1.22749 0.97379 0.98308 0.96182 1.22196 0.87405 0.91306 0.90854 1.86568 1.63631 1.44007 1.41794 1.21829 1.01383 0.86996 0.90642 1.45779 1.62638 1.15572 1.12503 1.18458 0.76302 0.81941 0.88054 1.90765 1.53696 1.79569 1.22935 1.21881 1.07429 0.96274 0.96313 1.24353 0.90733 0.93329 1.00316 1.21555 1.04099 0.98303 0.90183 1.22451 1.00994 0.94632 0.97536 1.21324 1.01370 1.01307 0.88979 1.22196 0.89241 0.91891 0.98172 0.92766 0.93762 0.95881 0.87894 0.88131 0.76260 0.89805 0.90849 0.75209 0.85261 0.88550 0.88511 0.90104 0.88995 0.89878 0.90019 0.93988 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.34 13.97 21.65 0.30 -60.04 16 2 C -0.03 -1.92 5.43 84.87 0.46 -1.46 16 3 Si 0.94 47.64 24.27 68.60 1.66 49.30 16 4 H -0.27 -12.81 6.48 99.48 0.65 -12.17 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.27 -13.55 6.66 99.48 0.66 -12.89 16 7 C -0.24 -13.65 10.57 84.04 0.89 -12.76 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.62 -29.68 3.21 -691.97 -2.22 -31.90 16 10 C 0.11 4.47 4.69 86.86 0.41 4.88 16 11 C -0.11 -3.38 6.26 31.99 0.20 -3.18 16 12 C 0.12 3.57 0.93 -9.60 -0.01 3.56 16 13 O -0.55 -15.01 13.10 -148.98 -1.95 -16.96 16 14 C 0.12 2.92 4.80 86.38 0.41 3.34 16 15 N -0.71 -15.97 5.12 -466.73 -2.39 -18.36 16 16 C 0.56 14.50 7.79 86.57 0.67 15.18 16 17 O -0.59 -19.76 16.77 -4.08 -0.07 -19.83 16 18 C -0.22 -4.19 6.09 -18.57 -0.11 -4.30 16 19 C -0.07 -1.14 10.43 24.66 0.26 -0.88 16 20 C -0.10 -1.06 6.80 30.51 0.21 -0.85 16 21 C -0.12 -1.12 7.16 31.67 0.23 -0.90 16 22 C -0.09 -1.24 6.02 30.52 0.18 -1.06 16 23 C 0.11 3.98 5.76 86.73 0.50 4.48 16 24 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 25 H 0.04 2.02 6.63 -2.39 -0.02 2.00 16 26 H 0.02 1.05 5.58 -2.39 -0.01 1.03 16 27 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.10 2.88 7.96 -2.39 -0.02 2.86 16 29 H 0.39 7.28 8.44 -74.06 -0.62 6.66 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 32 H 0.41 7.40 6.48 -92.71 -0.60 6.80 16 33 H 0.13 2.33 8.03 -2.91 -0.02 2.31 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.94 7.83 -2.39 -0.02 0.92 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 1.53 7.82 -2.39 -0.02 1.51 16 41 H 0.04 1.49 8.07 -2.39 -0.02 1.47 16 Total: -1.00 -75.88 327.66 -0.65 -76.54 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.29 Total: 15.20 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.30 Total: 6.04 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.31 Total: -110.29 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.02 Total: -36.79 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.66 Total: 49.30 kcal Total: -75.88 -0.65 -76.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278771783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.361 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds