Wall clock time and date at job start Tue Mar 31 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46504 * 269.99434 * 3 2 1 5 5 H 1.48495 * 109.46942 * 29.99521 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99732 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99635 * 174.34609 * 9 7 2 11 11 C 1.52995 * 112.84934 * 65.60483 * 10 9 7 12 12 N 1.46506 * 109.47394 * 46.42736 * 11 10 9 13 13 C 1.34770 * 120.00206 * 185.30422 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00047 * 179.97438 * 13 12 11 16 16 H 1.08998 * 115.51208 * 325.37267 * 15 13 12 17 17 C 1.53003 * 117.43187 * 110.65126 * 15 13 12 18 18 H 1.08999 * 119.81007 * 355.36810 * 17 15 13 19 19 C 1.54477 * 118.06560 * 198.08270 * 17 15 13 20 20 O 1.44419 * 104.80606 * 273.17557 * 19 17 15 21 21 C 1.44422 * 105.27526 * 40.50930 * 20 19 17 22 22 C 1.53004 * 117.43195 * 179.97438 * 15 13 12 23 23 H 1.09000 * 119.80940 * 5.65572 * 22 15 13 24 24 C 1.53782 * 113.69035 * 196.87036 * 10 9 7 25 25 C 1.53784 * 87.08196 * 89.12698 * 24 10 9 26 26 C 1.53779 * 113.61775 * 294.40367 * 10 9 7 27 27 H 0.97001 * 119.99564 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00271 * 354.35086 * 9 7 2 29 29 H 1.09000 * 109.47379 * 166.42542 * 11 10 9 30 30 H 1.08998 * 109.47275 * 286.42664 * 11 10 9 31 31 H 0.97000 * 119.99495 * 5.29836 * 12 11 10 32 32 H 1.08998 * 110.37276 * 154.34141 * 19 17 15 33 33 H 1.09001 * 110.46264 * 32.05502 * 19 17 15 34 34 H 1.09000 * 110.37481 * 200.65437 * 21 20 19 35 35 H 1.09004 * 110.37160 * 78.32635 * 21 20 19 36 36 H 1.08990 * 113.61743 * 203.67779 * 24 10 9 37 37 H 1.09005 * 113.61261 * 334.58626 * 24 10 9 38 38 H 1.08999 * 113.61698 * 270.88439 * 25 24 10 39 39 H 1.08995 * 113.68783 * 139.99303 * 25 24 10 40 40 H 1.09005 * 113.60880 * 25.35429 * 26 10 9 41 41 H 1.08994 * 113.61723 * 156.24935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4648 0.1266 11 6 3.9051 -3.3933 -1.0716 12 7 4.0579 -2.6302 -2.3129 13 6 3.8131 -3.2189 -3.5003 14 8 3.4668 -4.3805 -3.5413 15 6 3.9697 -2.4337 -4.7770 16 1 3.7016 -1.3790 -4.7154 17 6 5.1302 -2.8122 -5.6994 18 1 5.8471 -3.5707 -5.3851 19 6 5.5726 -1.7885 -6.7684 20 8 4.7221 -2.0514 -7.9055 21 6 3.4129 -2.3051 -7.3509 22 6 3.6772 -3.1601 -6.0915 23 1 3.2809 -4.1753 -6.0731 24 6 5.5879 -2.2866 0.5202 25 6 5.1233 -2.3490 1.9849 26 6 3.9153 -3.1587 1.4848 27 1 -0.4849 0.8401 -0.0004 28 1 3.8647 -0.3664 -0.0816 29 1 4.6451 -4.1932 -1.0436 30 1 2.9042 -3.8228 -1.0300 31 1 4.3351 -1.7013 -2.2801 32 1 6.6185 -1.9441 -7.0328 33 1 5.4205 -0.7712 -6.4078 34 1 2.7997 -2.8575 -8.0628 35 1 2.9280 -1.3676 -7.0785 36 1 6.2220 -3.1232 0.2272 37 1 6.0022 -1.3196 0.2345 38 1 4.8560 -1.3773 2.4000 39 1 5.7915 -2.9166 2.6324 40 1 2.9793 -2.8960 1.9778 41 1 4.0921 -4.2338 1.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280499717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:44 Heat of formation + Delta-G solvation = -10.981714 kcal Electronic energy + Delta-G solvation = -22355.116648 eV Core-core repulsion = 19044.284714 eV Total energy + Delta-G solvation = -3310.831934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70404 -39.35079 -38.30115 -34.63310 -33.99400 -33.28909 -30.62836 -28.88829 -28.08068 -25.77402 -25.36694 -23.69918 -22.42785 -21.28922 -20.77987 -19.90705 -18.38689 -17.75286 -17.47987 -16.04223 -15.98851 -15.49441 -15.26249 -14.83481 -14.63438 -14.36123 -14.26876 -13.67201 -13.25080 -12.88323 -12.84636 -12.71996 -12.39395 -11.91075 -11.85686 -11.67663 -11.50107 -11.30284 -10.95927 -10.51723 -10.49281 -10.37516 -10.28664 -10.22873 -9.81957 -9.72018 -9.62344 -9.51323 -8.97719 -8.55362 -7.42332 -5.86052 -3.24751 2.60701 3.26328 3.28855 3.36307 3.39164 3.58276 3.84747 4.47063 4.47827 4.48358 4.73144 4.78048 4.93858 5.00325 5.02680 5.11094 5.18339 5.22671 5.32587 5.37745 5.47194 5.55649 5.57919 5.61310 5.84256 5.92883 5.99713 6.03303 6.06995 6.17544 6.19941 6.41309 6.50554 6.61738 6.74785 6.84171 6.97110 7.90467 7.93881 8.32348 8.58196 9.08677 9.80012 9.97952 11.31698 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.005230 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.531794 B = 5352.030291 C = 6285.988867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.724 5.724 10 C 0.177 3.823 11 C 0.124 3.876 12 N -0.694 5.694 13 C 0.541 3.459 14 O -0.552 6.552 15 C -0.145 4.145 16 H 0.124 0.876 17 C -0.171 4.171 18 H 0.126 0.874 19 C 0.074 3.926 20 O -0.374 6.374 21 C 0.072 3.928 22 C -0.159 4.159 23 H 0.134 0.866 24 C -0.146 4.146 25 C -0.131 4.131 26 C -0.148 4.148 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.064 -3.328 -7.737 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.367 5.367 10 C 0.085 3.915 11 C -0.003 4.003 12 N -0.342 5.342 13 C 0.326 3.674 14 O -0.430 6.430 15 C -0.166 4.166 16 H 0.142 0.858 17 C -0.190 4.190 18 H 0.144 0.856 19 C -0.003 4.003 20 O -0.293 6.293 21 C -0.005 4.005 22 C -0.178 4.178 23 H 0.152 0.848 24 C -0.183 4.183 25 C -0.169 4.169 26 C -0.188 4.188 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.611 -4.189 -7.953 15.487 hybrid contribution 0.427 1.747 0.422 1.847 sum 13.038 -2.443 -7.531 15.254 Atomic orbital electron populations 1.69696 1.05109 1.25845 1.56887 1.24674 0.95147 0.97025 1.01833 0.86645 0.79374 0.85343 0.77710 1.21156 1.21747 1.20213 1.18923 0.80055 0.94666 1.43322 0.89112 1.42411 1.03989 1.01562 1.88698 1.20777 0.90960 0.88044 0.91738 1.21782 1.01449 0.93704 0.83318 1.45597 1.67638 1.15811 1.05190 1.19327 0.77239 0.86716 0.84144 1.90666 1.47736 1.17238 1.87407 1.22433 1.02843 1.00984 0.90318 0.85816 1.24151 0.91807 1.02606 1.00410 0.85622 1.22929 0.95735 0.96898 0.84693 1.89169 1.19651 1.91196 1.29252 1.22984 0.85755 0.98350 0.93383 1.24139 0.98643 1.02180 0.92843 0.84768 1.23242 0.96275 1.01501 0.97325 1.22654 0.97837 1.00840 0.95520 1.23273 0.99356 0.97993 0.98146 0.92976 0.80347 0.92553 0.91279 0.76342 0.88272 0.91599 0.88088 0.91536 0.90061 0.91913 0.90248 0.92455 0.90158 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 20.63 27.68 -169.99 -4.71 15.92 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.05 6.60 56.52 0.37 -5.67 16 7 C -0.24 -6.21 9.75 -15.06 -0.15 -6.35 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.72 -15.06 4.28 -46.48 -0.20 -15.26 16 10 C 0.18 3.04 0.94 -131.01 -0.12 2.91 16 11 C 0.12 2.14 5.05 -4.04 -0.02 2.12 16 12 N -0.69 -11.49 5.37 -60.30 -0.32 -11.81 16 13 C 0.54 9.19 7.61 -10.99 -0.08 9.11 16 14 O -0.55 -11.17 16.34 5.55 0.09 -11.08 16 15 C -0.14 -1.95 5.74 -91.77 -0.53 -2.48 16 16 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 17 C -0.17 -1.95 6.91 -89.07 -0.62 -2.57 16 18 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 19 C 0.07 0.74 7.44 37.93 0.28 1.02 16 20 O -0.37 -4.50 11.65 -35.23 -0.41 -4.91 16 21 C 0.07 0.79 7.44 37.94 0.28 1.07 16 22 C -0.16 -2.01 6.65 -89.07 -0.59 -2.60 16 23 H 0.13 1.82 7.82 -51.93 -0.41 1.42 16 24 C -0.15 -2.03 7.37 -25.92 -0.19 -2.22 16 25 C -0.13 -1.90 7.99 -25.92 -0.21 -2.10 16 26 C -0.15 -2.42 7.28 -25.92 -0.19 -2.61 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.36 7.41 5.80 -40.82 -0.24 7.17 16 29 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 31 H 0.40 6.22 8.05 -40.82 -0.33 5.89 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 37 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.54 7.85 -51.93 -0.41 1.13 16 41 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -31.44 336.92 -8.35 -39.79 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.43 Total: 14.08 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.23 Total: -4.53 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.25 Total: -54.36 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.32 Total: -15.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.71 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.44 -8.35 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280499717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.813 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds