Wall clock time and date at job start Tue Mar 31 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46504 * 269.99434 * 3 2 1 5 5 H 1.48495 * 109.46942 * 29.99521 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99732 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99635 * 174.34609 * 9 7 2 11 11 C 1.52995 * 112.84934 * 65.60483 * 10 9 7 12 12 N 1.46506 * 109.47394 * 46.42736 * 11 10 9 13 13 C 1.34770 * 120.00206 * 185.30422 * 12 11 10 14 14 O 1.21284 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00047 * 179.97438 * 13 12 11 16 16 H 1.08998 * 115.51208 * 325.37267 * 15 13 12 17 17 C 1.53003 * 117.43187 * 110.65126 * 15 13 12 18 18 H 1.08999 * 119.81007 * 355.36810 * 17 15 13 19 19 C 1.54477 * 118.06560 * 198.08270 * 17 15 13 20 20 O 1.44419 * 104.80606 * 273.17557 * 19 17 15 21 21 C 1.44422 * 105.27526 * 40.50930 * 20 19 17 22 22 C 1.53004 * 117.43195 * 179.97438 * 15 13 12 23 23 H 1.09000 * 119.80940 * 5.65572 * 22 15 13 24 24 C 1.53782 * 113.69035 * 196.87036 * 10 9 7 25 25 C 1.53784 * 87.08196 * 89.12698 * 24 10 9 26 26 C 1.53779 * 113.61775 * 294.40367 * 10 9 7 27 27 H 0.97001 * 119.99564 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00271 * 354.35086 * 9 7 2 29 29 H 1.09000 * 109.47379 * 166.42542 * 11 10 9 30 30 H 1.08998 * 109.47275 * 286.42664 * 11 10 9 31 31 H 0.97000 * 119.99495 * 5.29836 * 12 11 10 32 32 H 1.08998 * 110.37276 * 154.34141 * 19 17 15 33 33 H 1.09001 * 110.46264 * 32.05502 * 19 17 15 34 34 H 1.09000 * 110.37481 * 200.65437 * 21 20 19 35 35 H 1.09004 * 110.37160 * 78.32635 * 21 20 19 36 36 H 1.08990 * 113.61743 * 203.67779 * 24 10 9 37 37 H 1.09005 * 113.61261 * 334.58626 * 24 10 9 38 38 H 1.08999 * 113.61698 * 270.88439 * 25 24 10 39 39 H 1.08995 * 113.68783 * 139.99303 * 25 24 10 40 40 H 1.09005 * 113.60880 * 25.35429 * 26 10 9 41 41 H 1.08994 * 113.61723 * 156.24935 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1376 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4648 0.1266 11 6 3.9051 -3.3933 -1.0716 12 7 4.0579 -2.6302 -2.3129 13 6 3.8131 -3.2189 -3.5003 14 8 3.4668 -4.3805 -3.5413 15 6 3.9697 -2.4337 -4.7770 16 1 3.7016 -1.3790 -4.7154 17 6 5.1302 -2.8122 -5.6994 18 1 5.8471 -3.5707 -5.3851 19 6 5.5726 -1.7885 -6.7684 20 8 4.7221 -2.0514 -7.9055 21 6 3.4129 -2.3051 -7.3509 22 6 3.6772 -3.1601 -6.0915 23 1 3.2809 -4.1753 -6.0731 24 6 5.5879 -2.2866 0.5202 25 6 5.1233 -2.3490 1.9849 26 6 3.9153 -3.1587 1.4848 27 1 -0.4849 0.8401 -0.0004 28 1 3.8647 -0.3664 -0.0816 29 1 4.6451 -4.1932 -1.0436 30 1 2.9042 -3.8228 -1.0300 31 1 4.3351 -1.7013 -2.2801 32 1 6.6185 -1.9441 -7.0328 33 1 5.4205 -0.7712 -6.4078 34 1 2.7997 -2.8575 -8.0628 35 1 2.9280 -1.3676 -7.0785 36 1 6.2220 -3.1232 0.2272 37 1 6.0022 -1.3196 0.2345 38 1 4.8560 -1.3773 2.4000 39 1 5.7915 -2.9166 2.6324 40 1 2.9793 -2.8960 1.9778 41 1 4.0921 -4.2338 1.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280499717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:43 Heat of formation + Delta-G solvation = -33.567760 kcal Electronic energy + Delta-G solvation = -22356.096053 eV Core-core repulsion = 19044.284714 eV Total energy + Delta-G solvation = -3311.811338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75792 -40.65186 -39.60382 -35.63527 -35.43584 -35.15407 -32.55179 -29.72103 -29.45065 -26.87296 -26.67991 -25.46481 -23.61818 -22.51737 -21.70968 -21.19703 -19.93519 -19.57539 -18.70051 -17.29754 -17.04026 -16.71044 -16.30630 -16.14802 -16.05928 -15.84196 -15.64060 -14.99795 -14.73889 -14.52878 -14.13283 -13.91178 -13.54055 -13.23659 -13.12466 -12.97790 -12.85618 -12.62261 -12.53229 -12.12191 -11.81264 -11.68821 -11.54117 -11.47756 -11.33456 -11.05530 -10.93943 -10.75675 -10.67101 -9.98606 -9.32100 -7.99081 -5.34964 1.36501 1.38631 1.42985 1.50549 2.15399 2.49568 2.50062 3.02026 3.29005 3.39009 3.50058 3.52038 3.72699 3.77525 3.85099 3.93286 4.01244 4.08953 4.12452 4.18345 4.38596 4.57007 4.68999 4.72917 4.73782 4.79407 4.85327 4.90893 4.96586 4.97238 5.03077 5.12512 5.30555 5.36618 5.49899 5.64922 5.68643 5.85243 6.24166 6.59888 7.10163 7.24079 7.82977 8.03483 9.22669 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015160 B = 0.005230 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.531794 B = 5352.030291 C = 6285.988867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.064 4.064 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.307 1.307 6 H -0.245 1.245 7 C -0.210 4.210 8 H 0.045 0.955 9 N -0.721 5.721 10 C 0.160 3.840 11 C 0.130 3.870 12 N -0.691 5.691 13 C 0.535 3.465 14 O -0.591 6.591 15 C -0.154 4.154 16 H 0.136 0.864 17 C -0.149 4.149 18 H 0.130 0.870 19 C 0.074 3.926 20 O -0.388 6.388 21 C 0.076 3.924 22 C -0.172 4.172 23 H 0.118 0.882 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.153 4.153 27 H 0.255 0.745 28 H 0.370 0.630 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.409 0.591 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 -2.254 -8.342 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.255 4.255 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.234 1.234 6 H -0.169 1.169 7 C -0.341 4.341 8 H 0.063 0.937 9 N -0.364 5.364 10 C 0.069 3.931 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.322 3.678 14 O -0.473 6.473 15 C -0.175 4.175 16 H 0.154 0.846 17 C -0.168 4.168 18 H 0.148 0.852 19 C -0.002 4.002 20 O -0.307 6.307 21 C -0.001 4.001 22 C -0.191 4.191 23 H 0.136 0.864 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.193 4.193 27 H 0.064 0.936 28 H 0.205 0.795 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.245 0.755 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.455 -3.128 -8.555 18.808 hybrid contribution -0.780 1.234 0.630 1.590 sum 15.675 -1.894 -7.925 17.666 Atomic orbital electron populations 1.69912 1.07473 1.26472 1.59915 1.25498 0.95928 1.01235 1.02838 0.85442 0.78778 0.79478 0.78237 1.19975 1.23424 1.16939 1.18690 0.82295 0.92669 1.40490 0.93702 1.42256 1.02090 1.03442 1.88606 1.21111 0.93699 0.86567 0.91717 1.21670 0.99611 0.94389 0.83958 1.45599 1.67289 1.16072 1.04947 1.19952 0.76148 0.86488 0.85252 1.90642 1.49480 1.19154 1.88054 1.22349 1.05318 1.00929 0.88871 0.84636 1.24249 0.90995 1.02583 0.98984 0.85236 1.23128 0.96599 0.96948 0.83499 1.89160 1.20123 1.91278 1.30153 1.23031 0.85810 0.98497 0.92740 1.24179 1.00154 1.01704 0.93063 0.86415 1.23188 0.93446 1.03454 0.95976 1.22602 0.96846 0.99948 0.96588 1.23327 0.98839 0.99705 0.97450 0.93616 0.79513 0.90428 0.95652 0.75468 0.85929 0.90270 0.86836 0.90815 0.87226 0.90517 0.91696 0.89457 0.94046 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.24 13.97 21.65 0.30 -61.94 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.95 42.51 27.68 68.60 1.90 44.41 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.25 -9.56 6.60 99.48 0.66 -8.91 16 7 C -0.21 -11.20 9.75 84.03 0.82 -10.38 16 8 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 9 N -0.72 -29.39 4.28 -300.96 -1.29 -30.67 16 10 C 0.16 5.28 0.94 4.13 0.00 5.28 16 11 C 0.13 4.48 5.05 86.38 0.44 4.92 16 12 N -0.69 -22.39 5.37 -463.07 -2.49 -24.87 16 13 C 0.53 18.13 7.61 87.66 0.67 18.80 16 14 O -0.59 -24.54 16.34 -3.04 -0.05 -24.59 16 15 C -0.15 -3.97 5.74 -11.54 -0.07 -4.04 16 16 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 17 C -0.15 -3.09 6.91 -9.79 -0.07 -3.16 16 18 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 19 C 0.07 1.25 7.44 72.48 0.54 1.79 16 20 O -0.39 -8.37 11.65 -148.98 -1.74 -10.11 16 21 C 0.08 1.53 7.44 72.49 0.54 2.07 16 22 C -0.17 -4.20 6.65 -9.79 -0.07 -4.27 16 23 H 0.12 3.27 7.82 -2.39 -0.02 3.25 16 24 C -0.12 -2.91 7.37 31.12 0.23 -2.68 16 25 C -0.12 -3.15 7.99 31.12 0.25 -2.90 16 26 C -0.15 -4.90 7.28 31.12 0.23 -4.68 16 27 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.37 14.13 5.80 -92.71 -0.54 13.59 16 29 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 30 H 0.02 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.41 11.96 8.05 -92.71 -0.75 11.21 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.11 2.07 7.93 -2.39 -0.02 2.05 16 37 H 0.08 1.68 8.10 -2.38 -0.02 1.66 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.63 7.85 -2.38 -0.02 1.61 16 41 H 0.09 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -72.15 336.92 0.32 -71.83 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.30 Total: 38.33 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 3.98 Total: -2.39 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -3.47 Total: -117.48 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.79 Total: -34.70 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.90 Total: 44.41 kcal Total: -72.15 0.32 -71.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280499717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.258 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds