Wall clock time and date at job start Tue Mar 31 2020 01:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 102.99924 * 2 1 4 4 C 1.53006 * 109.47381 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.38826 * 119.99780 * 179.97438 * 8 7 6 10 10 C 1.39798 * 119.58383 * 0.02562 * 9 8 7 11 11 C 1.38600 * 119.48984 * 179.97438 * 10 9 8 12 12 C 1.38393 * 118.67936 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14753 * 0.02562 * 12 11 10 14 14 C 1.41314 * 119.78004 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00310 * 0.02562 * 14 13 12 16 16 C 1.40026 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.30751 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00407 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47077 * 89.99836 * 18 16 14 20 20 H 1.48492 * 109.47275 * 210.00237 * 18 16 14 21 21 H 1.48500 * 109.46809 * 330.00378 * 18 16 14 22 22 N 1.31959 * 119.58387 * 179.73063 * 9 8 7 23 23 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47161 * 299.99478 * 1 2 3 25 25 H 1.08997 * 109.47664 * 59.99845 * 1 2 3 26 26 H 1.09000 * 109.46960 * 60.00329 * 3 2 1 27 27 H 1.08996 * 109.47404 * 300.00576 * 3 2 1 28 28 H 1.09000 * 109.46866 * 60.00197 * 4 3 2 29 29 H 1.09001 * 109.46611 * 300.00314 * 4 3 2 30 30 H 1.09000 * 109.47486 * 60.00167 * 5 4 3 31 31 H 1.09001 * 109.47362 * 299.99445 * 5 4 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 33 33 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 34 34 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 36 36 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.25532 * 359.96726 * 10 9 8 38 38 H 1.07992 * 120.66234 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.42099 * 179.97438 * 12 11 10 40 40 H 0.96994 * 119.99619 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0863 3.4308 0.0000 6 6 5.6066 3.6033 0.0000 7 6 5.9507 5.0941 0.0000 8 7 7.4064 5.2592 0.0006 9 6 7.9606 6.5321 0.0002 10 6 7.1214 7.6501 -0.0003 11 6 7.6767 8.9200 -0.0002 12 6 9.0553 9.0421 0.0010 13 6 9.8455 7.8796 0.0014 14 6 11.2544 7.9887 0.0020 15 1 11.7206 8.9629 0.0025 16 6 12.0460 6.8337 0.0030 17 7 11.4816 5.6543 0.0028 18 14 13.9085 6.9778 0.0045 19 1 14.4008 7.0164 1.4050 20 1 14.4961 5.8070 -0.6947 21 1 14.3090 8.2247 -0.6955 22 7 9.2728 6.6713 0.0062 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2372 -0.8899 28 1 4.1608 1.4706 -0.8909 29 1 4.1615 1.4703 0.8891 30 1 3.6678 3.9000 0.8904 31 1 3.6670 3.9009 -0.8896 32 1 6.0256 3.1333 0.8897 33 1 6.0255 3.1340 -0.8902 34 1 5.5318 5.5637 -0.8899 35 1 5.5318 5.5636 0.8900 36 1 7.9830 4.4792 0.0006 37 1 6.0487 7.5254 -0.0008 38 1 7.0463 9.7968 -0.0001 39 1 9.5179 10.0180 0.0007 40 1 12.0300 4.8543 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320710820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:53 Heat of formation + Delta-G solvation = 12.207092 kcal Electronic energy + Delta-G solvation = -18398.968187 eV Core-core repulsion = 15531.894666 eV Total energy + Delta-G solvation = -2867.073521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.27632 -36.64414 -34.68772 -33.25473 -31.21645 -30.22086 -29.35152 -28.51311 -25.62450 -25.22408 -22.26137 -21.58293 -20.88880 -20.22398 -17.31578 -16.53713 -16.16257 -16.11432 -14.96387 -14.78344 -14.71750 -14.40949 -14.11866 -13.82609 -13.81175 -13.28433 -12.96134 -12.93966 -12.70663 -12.11336 -12.08869 -11.74451 -11.33570 -11.29049 -11.10614 -10.95791 -10.86993 -10.65346 -10.55493 -10.39098 -10.29822 -9.88248 -9.44743 -8.84391 -8.03203 -7.87468 -7.47355 -6.46876 -6.29459 -4.44195 1.33062 2.25539 2.90552 3.13058 3.16401 3.27212 3.33226 4.00815 4.15449 4.56755 4.61026 4.73780 4.75618 4.87362 4.89607 5.00789 5.20373 5.29741 5.39524 5.46343 5.59150 5.70775 5.83798 5.88445 6.03077 6.08676 6.18824 6.30559 6.34393 6.61527 6.89786 6.92969 6.98849 7.28719 7.63588 7.85196 7.95596 8.20590 8.40960 8.73268 8.84034 9.16088 10.28361 10.44030 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002486 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.165764 B =11258.398532 C =12184.909702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.273 6.273 3 C -0.082 4.082 4 C -0.104 4.104 5 C -0.109 4.109 6 C -0.129 4.129 7 C 0.142 3.858 8 N -0.740 5.740 9 C 0.410 3.590 10 C -0.367 4.367 11 C -0.033 4.033 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.532 5.532 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.395 0.605 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.475 -9.336 -0.018 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.047 6.047 3 C -0.230 4.230 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.167 4.167 7 C 0.017 3.983 8 N -0.377 5.377 9 C 0.170 3.830 10 C -0.393 4.393 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.338 5.338 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.253 5.253 23 H 0.118 0.882 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.443 -11.107 -0.015 19.023 hybrid contribution -0.505 1.536 0.003 1.617 sum -15.949 -9.571 -0.011 18.600 Atomic orbital electron populations 1.23361 0.94299 1.06445 1.04867 1.87004 1.07268 1.12297 1.98083 1.23460 1.01033 0.93528 1.04971 1.21352 0.91880 0.97378 1.03635 1.21476 0.95957 0.94894 1.02585 1.21750 0.95443 0.96637 1.02909 1.21027 0.82231 0.94743 1.00345 1.44155 1.04268 1.05350 1.83948 1.18548 0.90434 0.84205 0.89767 1.20604 0.97320 0.92758 1.28639 1.20596 0.94574 0.95236 0.95297 1.21531 0.93514 0.98349 1.20640 1.18210 0.93255 0.85554 0.86526 1.19574 0.89874 0.93647 1.43595 0.89914 1.26058 1.00654 0.95123 0.93593 1.70158 1.36345 0.98076 1.29238 0.86376 0.82630 0.78932 0.79109 1.19524 1.20264 1.18617 1.68220 1.06299 1.25727 1.25100 0.88172 0.90533 0.90537 0.90022 0.90027 0.90839 0.90846 0.91529 0.91525 0.91310 0.91318 0.93277 0.93286 0.77049 0.89258 0.88984 0.88735 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.76 101.05 1.09 0.36 16 2 S -0.27 -2.48 22.38 -107.50 -2.41 -4.89 16 3 C -0.08 -0.65 5.94 37.16 0.22 -0.43 16 4 C -0.10 -0.90 5.22 -26.73 -0.14 -1.04 16 5 C -0.11 -1.01 5.21 -26.73 -0.14 -1.14 16 6 C -0.13 -1.52 5.33 -26.73 -0.14 -1.66 16 7 C 0.14 2.20 4.88 -4.04 -0.02 2.18 16 8 N -0.74 -15.09 5.72 -60.39 -0.35 -15.44 16 9 C 0.41 10.27 7.65 -155.32 -1.19 9.08 16 10 C -0.37 -8.67 9.34 -38.86 -0.36 -9.03 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 13 C 0.29 8.30 6.55 -85.00 -0.56 7.74 16 14 C -0.43 -11.98 9.14 -37.74 -0.34 -12.33 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 16 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 17 N -0.72 -19.34 11.46 55.55 0.64 -18.70 16 18 Si 0.91 18.98 29.56 -169.99 -5.02 13.96 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 22 N -0.53 -15.01 7.89 -10.33 -0.08 -15.09 16 23 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 36 H 0.39 8.01 8.59 -40.82 -0.35 7.66 16 37 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -30.56 346.75 -11.02 -41.58 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.57 Total: 7.65 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.46 Total: -14.29 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.21 Total: -49.24 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.41 Total: -4.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.56 -11.02 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320710820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.786 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds