Wall clock time and date at job start Tue Mar 31 2020 01:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 102.99924 * 2 1 4 4 C 1.53006 * 109.47381 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46623 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46626 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46691 * 179.97438 * 7 6 5 9 9 C 1.38826 * 119.99780 * 179.97438 * 8 7 6 10 10 C 1.39798 * 119.58383 * 0.02562 * 9 8 7 11 11 C 1.38600 * 119.48984 * 179.97438 * 10 9 8 12 12 C 1.38393 * 118.67936 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14753 * 0.02562 * 12 11 10 14 14 C 1.41314 * 119.78004 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00310 * 0.02562 * 14 13 12 16 16 C 1.40026 * 120.00112 * 179.97438 * 14 13 12 17 17 N 1.30751 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00407 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47077 * 89.99836 * 18 16 14 20 20 H 1.48492 * 109.47275 * 210.00237 * 18 16 14 21 21 H 1.48500 * 109.46809 * 330.00378 * 18 16 14 22 22 N 1.31959 * 119.58387 * 179.73063 * 9 8 7 23 23 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47161 * 299.99478 * 1 2 3 25 25 H 1.08997 * 109.47664 * 59.99845 * 1 2 3 26 26 H 1.09000 * 109.46960 * 60.00329 * 3 2 1 27 27 H 1.08996 * 109.47404 * 300.00576 * 3 2 1 28 28 H 1.09000 * 109.46866 * 60.00197 * 4 3 2 29 29 H 1.09001 * 109.46611 * 300.00314 * 4 3 2 30 30 H 1.09000 * 109.47486 * 60.00167 * 5 4 3 31 31 H 1.09001 * 109.47362 * 299.99445 * 5 4 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 6 5 4 33 33 H 1.09000 * 109.47050 * 59.99904 * 6 5 4 34 34 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 35 35 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 36 36 H 0.96999 * 120.00076 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.25532 * 359.96726 * 10 9 8 38 38 H 1.07992 * 120.66234 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.42099 * 179.97438 * 12 11 10 40 40 H 0.96994 * 119.99619 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0863 3.4308 0.0000 6 6 5.6066 3.6033 0.0000 7 6 5.9507 5.0941 0.0000 8 7 7.4064 5.2592 0.0006 9 6 7.9606 6.5321 0.0002 10 6 7.1214 7.6501 -0.0003 11 6 7.6767 8.9200 -0.0002 12 6 9.0553 9.0421 0.0010 13 6 9.8455 7.8796 0.0014 14 6 11.2544 7.9887 0.0020 15 1 11.7206 8.9629 0.0025 16 6 12.0460 6.8337 0.0030 17 7 11.4816 5.6543 0.0028 18 14 13.9085 6.9778 0.0045 19 1 14.4008 7.0164 1.4050 20 1 14.4961 5.8070 -0.6947 21 1 14.3090 8.2247 -0.6955 22 7 9.2728 6.6713 0.0062 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2372 -0.8899 28 1 4.1608 1.4706 -0.8909 29 1 4.1615 1.4703 0.8891 30 1 3.6678 3.9000 0.8904 31 1 3.6670 3.9009 -0.8896 32 1 6.0256 3.1333 0.8897 33 1 6.0255 3.1340 -0.8902 34 1 5.5318 5.5637 -0.8899 35 1 5.5318 5.5636 0.8900 36 1 7.9830 4.4792 0.0006 37 1 6.0487 7.5254 -0.0008 38 1 7.0463 9.7968 -0.0001 39 1 9.5179 10.0180 0.0007 40 1 12.0300 4.8543 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320710820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:53 Heat of formation + Delta-G solvation = -3.773934 kcal Electronic energy + Delta-G solvation = -18399.661176 eV Core-core repulsion = 15531.894666 eV Total energy + Delta-G solvation = -2867.766510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12557 -37.79726 -36.06336 -35.03666 -32.60837 -32.00828 -30.23752 -29.73395 -27.31841 -26.57826 -23.66258 -23.01399 -21.98747 -21.91121 -19.24486 -17.97625 -17.14402 -16.97287 -16.65612 -16.43055 -16.00462 -15.73427 -15.21060 -14.79262 -14.73211 -14.57561 -14.37252 -14.13216 -13.74990 -13.52771 -13.40294 -12.89788 -12.85895 -12.71572 -12.57752 -12.28330 -12.18894 -12.02976 -11.76505 -11.66751 -11.50057 -11.24944 -10.92884 -10.63876 -9.82905 -9.44143 -8.71911 -8.28194 -8.22415 -6.47621 0.74305 1.06599 1.35098 1.41583 1.54989 1.59268 1.68792 2.25411 2.68814 2.92979 3.77724 3.90210 4.00766 4.04786 4.18377 4.32525 4.33756 4.37392 4.46946 4.53410 4.59795 4.67192 4.76424 4.83814 4.88020 4.91697 5.00327 5.00350 5.01391 5.09821 5.19318 5.36698 5.37139 5.44142 5.72589 5.97236 6.08611 6.23644 6.57671 6.84492 6.96690 7.23228 8.35263 8.51947 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.002486 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.165764 B =11258.398532 C =12184.909702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.333 6.333 3 C -0.069 4.069 4 C -0.099 4.099 5 C -0.100 4.100 6 C -0.119 4.119 7 C 0.140 3.860 8 N -0.737 5.737 9 C 0.391 3.609 10 C -0.367 4.367 11 C -0.031 4.031 12 C -0.345 4.345 13 C 0.256 3.744 14 C -0.471 4.471 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.753 5.753 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.256 1.256 22 N -0.566 5.566 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.392 0.608 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.774 -9.315 -0.026 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.107 6.107 3 C -0.217 4.217 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.157 4.157 7 C 0.016 3.984 8 N -0.372 5.372 9 C 0.150 3.850 10 C -0.393 4.393 11 C -0.055 4.055 12 C -0.368 4.368 13 C 0.129 3.871 14 C -0.503 4.503 15 H 0.105 0.895 16 C -0.198 4.198 17 N -0.375 5.375 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.180 1.180 22 N -0.289 5.289 23 H 0.127 0.873 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.226 0.774 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.799 -11.098 -0.023 20.134 hybrid contribution -0.279 1.500 0.007 1.526 sum -17.077 -9.598 -0.015 19.590 Atomic orbital electron populations 1.23398 0.91014 1.07352 1.05841 1.87209 1.11042 1.14222 1.98234 1.23392 1.00231 0.92231 1.05883 1.21266 0.92661 0.96809 1.03020 1.21396 0.93754 0.95335 1.03486 1.21670 0.97433 0.93900 1.02737 1.21288 0.79225 0.97352 1.00583 1.44404 1.06283 1.03739 1.82812 1.19042 0.90108 0.86371 0.89475 1.20963 0.98712 0.92356 1.27257 1.21024 0.94170 0.96766 0.93509 1.21698 0.94708 0.98073 1.22293 1.18713 0.94349 0.86675 0.87347 1.19938 0.90452 0.94643 1.45309 0.89525 1.26993 1.05953 0.94272 0.92552 1.70255 1.38550 0.98917 1.29784 0.85144 0.75546 0.79209 0.79352 1.18818 1.19289 1.17998 1.68195 1.08066 1.26124 1.26544 0.87345 0.89533 0.89536 0.89060 0.89062 0.91513 0.91524 0.90617 0.90607 0.91536 0.91539 0.92844 0.92863 0.77393 0.86302 0.85200 0.87925 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.76 113.37 1.22 0.13 16 2 S -0.33 -5.72 22.38 -56.49 -1.26 -6.99 16 3 C -0.07 -0.96 5.94 71.98 0.43 -0.54 16 4 C -0.10 -1.57 5.22 30.60 0.16 -1.41 16 5 C -0.10 -1.61 5.21 30.60 0.16 -1.45 16 6 C -0.12 -2.63 5.33 30.60 0.16 -2.47 16 7 C 0.14 4.09 4.88 86.38 0.42 4.51 16 8 N -0.74 -29.91 5.72 -344.98 -1.97 -31.88 16 9 C 0.39 19.63 7.65 133.42 1.02 20.65 16 10 C -0.37 -16.85 9.34 22.73 0.21 -16.64 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.34 -18.02 9.83 22.87 0.22 -17.79 16 13 C 0.26 15.00 6.55 40.18 0.26 15.27 16 14 C -0.47 -26.74 9.14 23.46 0.21 -26.53 16 15 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 16 C 0.02 1.26 5.50 85.29 0.47 1.73 16 17 N -0.75 -41.64 11.46 21.84 0.25 -41.39 16 18 Si 0.99 39.35 29.56 68.60 2.03 41.37 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 N -0.57 -32.79 7.89 -186.58 -1.47 -34.27 16 23 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 35 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 36 H 0.39 16.13 8.59 -92.71 -0.80 15.34 16 37 H 0.12 4.65 6.68 -2.91 -0.02 4.63 16 38 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -67.59 346.75 2.96 -64.63 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.21 Total: 34.26 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 5.18 Total: -25.73 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.20 Total: -107.54 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -1.26 Total: -6.99 kcal Total: -67.59 2.96 -64.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320710820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds