Wall clock time and date at job start Tue Mar 31 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48495 * 109.47128 * 274.24102 * 3 2 1 5 5 H 1.48507 * 109.47100 * 34.24222 * 3 2 1 6 6 H 1.48500 * 109.46890 * 154.23996 * 3 2 1 7 7 C 1.37869 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00674 * 352.87934 * 7 2 1 9 9 C 1.50708 * 119.99831 * 173.16061 * 7 2 1 10 10 C 1.53003 * 115.54705 * 301.24568 * 9 7 2 11 11 N 1.46494 * 109.47491 * 294.79992 * 10 9 7 12 12 C 1.34774 * 120.00151 * 184.70074 * 11 10 9 13 13 O 1.21353 * 119.99774 * 4.56229 * 12 11 10 14 14 C 1.49453 * 120.00102 * 184.55658 * 12 11 10 15 15 O 1.21349 * 119.99981 * 5.10058 * 14 12 11 16 16 N 1.34774 * 119.99846 * 185.09319 * 14 12 11 17 17 C 1.46500 * 119.99630 * 180.02562 * 16 14 12 18 18 C 1.54269 * 110.03145 * 272.90966 * 17 16 14 19 19 C 1.54968 * 104.15735 * 217.13981 * 18 17 16 20 20 C 1.54884 * 102.77929 * 37.88896 * 19 18 17 21 21 C 1.53876 * 110.03017 * 155.69188 * 17 16 14 22 22 C 1.53001 * 117.50049 * 155.58058 * 9 7 2 23 23 C 1.52994 * 117.50038 * 86.92121 * 9 7 2 24 24 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46506 * 54.80417 * 10 9 7 26 26 H 1.08995 * 109.46636 * 174.79666 * 10 9 7 27 27 H 0.97001 * 119.99697 * 4.69934 * 11 10 9 28 28 H 0.96995 * 120.00157 * 0.02562 * 16 14 12 29 29 H 1.08999 * 110.02151 * 34.30115 * 17 16 14 30 30 H 1.09000 * 110.48640 * 335.78178 * 18 17 16 31 31 H 1.08996 * 110.48760 * 98.42779 * 18 17 16 32 32 H 1.08999 * 110.71718 * 279.57108 * 19 18 17 33 33 H 1.09005 * 110.92089 * 156.29658 * 19 18 17 34 34 H 1.09008 * 110.48446 * 203.40690 * 20 19 18 35 35 H 1.09000 * 110.60305 * 80.81856 * 20 19 18 36 36 H 1.09001 * 110.03506 * 238.56441 * 21 17 16 37 37 H 1.09001 * 110.03317 * 0.02562 * 21 17 16 38 38 H 1.09004 * 117.49881 * 359.97438 * 22 9 7 39 39 H 1.08997 * 117.49907 * 145.01644 * 22 9 7 40 40 H 1.09000 * 117.50159 * 214.98228 * 23 9 7 41 41 H 1.08998 * 117.50086 * 359.97349 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4070 2.0983 -1.3962 5 1 1.4942 2.6252 0.7878 6 1 3.5886 1.4160 0.6085 7 6 2.0046 -1.1940 -0.0005 8 1 1.4709 -2.1258 0.1150 9 6 3.5036 -1.1985 -0.1560 10 6 4.0360 -0.5554 -1.4382 11 7 3.5998 -1.3403 -2.5957 12 6 4.0302 -1.0156 -3.8309 13 8 4.8430 -0.1263 -3.9759 14 6 3.5065 -1.7509 -5.0220 15 8 2.6268 -2.5758 -4.8873 16 7 4.0113 -1.4976 -6.2457 17 6 3.4975 -2.2180 -7.4134 18 6 4.2620 -3.5457 -7.5936 19 6 4.3932 -3.7020 -9.1298 20 6 4.6434 -2.2483 -9.6020 21 6 3.7394 -1.3934 -8.6898 22 6 4.2680 -2.4010 0.4013 23 6 4.3458 -1.0478 1.1124 24 1 -0.4850 0.8401 0.0004 25 1 3.6505 0.4607 -1.5220 26 1 5.1251 -0.5294 -1.4063 27 1 3.0013 -2.0937 -2.4731 28 1 4.7146 -0.8384 -6.3534 29 1 2.4322 -2.4141 -7.2919 30 1 5.2472 -3.4845 -7.1311 31 1 3.6926 -4.3741 -7.1723 32 1 3.4705 -4.0939 -9.5577 33 1 5.2380 -4.3419 -9.3852 34 1 4.3522 -2.1308 -10.6458 35 1 5.6898 -1.9754 -9.4658 36 1 2.7916 -1.1901 -9.1883 37 1 4.2394 -0.4575 -8.4406 38 1 3.6868 -3.1887 0.8807 39 1 5.1504 -2.7337 -0.1453 40 1 5.2794 -0.4907 1.0334 41 1 3.8158 -0.9449 2.0592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321538380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:16 Heat of formation + Delta-G solvation = -57.291571 kcal Electronic energy + Delta-G solvation = -22012.162431 eV Core-core repulsion = 18699.322351 eV Total energy + Delta-G solvation = -3312.840080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44355 -38.83807 -37.59764 -37.01372 -34.11872 -33.16238 -32.21570 -29.00138 -28.32490 -27.20516 -25.46566 -23.38526 -21.61958 -20.99010 -20.49389 -20.02990 -19.41304 -18.07405 -16.87810 -16.44609 -15.80071 -15.71009 -15.51768 -15.00593 -14.78688 -14.37121 -13.89809 -13.63424 -13.53488 -13.21124 -12.93943 -12.39006 -12.26192 -12.18744 -11.77924 -11.44591 -11.39013 -11.31199 -11.08181 -10.97016 -10.90819 -10.72678 -10.60563 -10.30707 -9.65316 -9.30691 -9.22075 -9.18086 -8.89947 -8.51634 -8.45651 -6.19202 -4.21102 1.74564 2.64838 3.24482 3.35386 3.39722 3.54033 3.95437 4.27760 4.35096 4.36249 4.62476 4.73872 4.98729 5.13088 5.18787 5.19404 5.25220 5.27986 5.37556 5.53592 5.59697 5.62523 5.77350 5.88346 5.90079 5.96594 6.04442 6.07860 6.10640 6.35068 6.38717 6.44177 6.64528 6.79169 6.89449 7.07329 7.23125 7.63451 7.79842 8.09767 8.38860 8.43830 8.83888 9.43469 10.91924 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.004006 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.762515 B = 6987.866088 C = 7215.198709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.083 3.917 3 Si 0.867 3.133 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.018 4.018 10 C 0.149 3.851 11 N -0.664 5.664 12 C 0.497 3.503 13 O -0.543 6.543 14 C 0.509 3.491 15 O -0.513 6.513 16 N -0.702 5.702 17 C 0.138 3.862 18 C -0.136 4.136 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.180 4.180 23 C -0.186 4.186 24 H 0.266 0.734 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.420 0.580 28 H 0.410 0.590 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -4.125 -16.012 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.121 4.121 3 Si 0.695 3.305 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.020 4.020 10 C 0.026 3.974 11 N -0.315 5.315 12 C 0.276 3.724 13 O -0.422 6.422 14 C 0.289 3.711 15 O -0.387 6.387 16 N -0.356 5.356 17 C 0.033 3.967 18 C -0.175 4.175 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.217 4.217 23 C -0.224 4.224 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.257 0.743 28 H 0.247 0.753 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.675 -3.969 -15.968 19.088 hybrid contribution 0.345 1.021 0.076 1.081 sum 10.020 -2.947 -15.892 19.017 Atomic orbital electron populations 1.69897 1.06360 1.27298 1.48855 1.24929 0.94528 0.99026 0.93602 0.87049 0.81420 0.83747 0.78288 1.20469 1.21732 1.17471 1.20269 0.86637 0.94837 1.51080 0.90174 1.19576 0.94925 0.98148 0.89310 1.21292 0.97255 0.94442 0.84407 1.45740 1.47400 1.33382 1.04951 1.20026 0.82964 0.84556 0.84827 1.90703 1.33409 1.31946 1.86108 1.20377 0.82832 0.83092 0.84756 1.90773 1.29344 1.32939 1.85639 1.45954 1.40788 1.42937 1.05966 1.21757 0.99684 0.91349 0.83898 1.22831 1.00988 0.97352 0.96330 1.22487 1.01867 0.96643 0.95158 1.22361 0.99758 0.95012 0.99039 1.22456 1.00926 0.98821 0.94865 1.22798 1.01701 0.91929 1.05247 1.23070 1.01090 0.99675 0.98605 0.92387 0.92059 0.92386 0.74255 0.75334 0.88702 0.90975 0.90751 0.91200 0.91310 0.91381 0.91400 0.90485 0.90771 0.89455 0.90811 0.91078 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 3 Si 0.87 21.23 24.69 -169.99 -4.20 17.03 16 4 H -0.28 -6.91 6.96 56.52 0.39 -6.52 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.25 -5.74 6.11 56.52 0.35 -5.40 16 7 C -0.49 -13.06 9.19 -34.44 -0.32 -13.38 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 10 C 0.15 3.19 5.08 -4.04 -0.02 3.17 16 11 N -0.66 -13.46 5.46 -60.73 -0.33 -13.79 16 12 C 0.50 9.44 7.88 -11.58 -0.09 9.34 16 13 O -0.54 -10.93 16.47 5.49 0.09 -10.84 16 14 C 0.51 8.55 7.88 -11.59 -0.09 8.46 16 15 O -0.51 -9.76 16.16 5.50 0.09 -9.67 16 16 N -0.70 -9.06 5.03 -53.15 -0.27 -9.33 16 17 C 0.14 1.48 3.23 -66.81 -0.22 1.26 16 18 C -0.14 -1.32 6.54 -25.03 -0.16 -1.48 16 19 C -0.12 -0.91 6.91 -24.70 -0.17 -1.08 16 20 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 21 C -0.13 -1.07 6.57 -25.61 -0.17 -1.24 16 22 C -0.18 -3.44 9.96 -26.70 -0.27 -3.71 16 23 C -0.19 -3.74 8.69 -26.70 -0.23 -3.97 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.44 4.27 -51.93 -0.22 1.21 16 26 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 27 H 0.42 8.58 7.83 -40.82 -0.32 8.26 16 28 H 0.41 4.75 7.79 -40.82 -0.32 4.44 16 29 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 30 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 7.61 -51.93 -0.40 0.18 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -30.59 336.01 -7.25 -37.84 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.33 Total: 11.28 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.14 Total: -1.96 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.17 Total: -48.76 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.18 Total: -20.50 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.20 Total: 17.03 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.59 -7.25 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321538380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.447 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds