Wall clock time and date at job start Tue Mar 31 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48495 * 109.47128 * 274.24102 * 3 2 1 5 5 H 1.48507 * 109.47100 * 34.24222 * 3 2 1 6 6 H 1.48500 * 109.46890 * 154.23996 * 3 2 1 7 7 C 1.37869 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00674 * 352.87934 * 7 2 1 9 9 C 1.50708 * 119.99831 * 173.16061 * 7 2 1 10 10 C 1.53003 * 115.54705 * 301.24568 * 9 7 2 11 11 N 1.46494 * 109.47491 * 294.79992 * 10 9 7 12 12 C 1.34774 * 120.00151 * 184.70074 * 11 10 9 13 13 O 1.21353 * 119.99774 * 4.56229 * 12 11 10 14 14 C 1.49453 * 120.00102 * 184.55658 * 12 11 10 15 15 O 1.21349 * 119.99981 * 5.10058 * 14 12 11 16 16 N 1.34774 * 119.99846 * 185.09319 * 14 12 11 17 17 C 1.46500 * 119.99630 * 180.02562 * 16 14 12 18 18 C 1.54269 * 110.03145 * 272.90966 * 17 16 14 19 19 C 1.54968 * 104.15735 * 217.13981 * 18 17 16 20 20 C 1.54884 * 102.77929 * 37.88896 * 19 18 17 21 21 C 1.53876 * 110.03017 * 155.69188 * 17 16 14 22 22 C 1.53001 * 117.50049 * 155.58058 * 9 7 2 23 23 C 1.52994 * 117.50038 * 86.92121 * 9 7 2 24 24 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46506 * 54.80417 * 10 9 7 26 26 H 1.08995 * 109.46636 * 174.79666 * 10 9 7 27 27 H 0.97001 * 119.99697 * 4.69934 * 11 10 9 28 28 H 0.96995 * 120.00157 * 0.02562 * 16 14 12 29 29 H 1.08999 * 110.02151 * 34.30115 * 17 16 14 30 30 H 1.09000 * 110.48640 * 335.78178 * 18 17 16 31 31 H 1.08996 * 110.48760 * 98.42779 * 18 17 16 32 32 H 1.08999 * 110.71718 * 279.57108 * 19 18 17 33 33 H 1.09005 * 110.92089 * 156.29658 * 19 18 17 34 34 H 1.09008 * 110.48446 * 203.40690 * 20 19 18 35 35 H 1.09000 * 110.60305 * 80.81856 * 20 19 18 36 36 H 1.09001 * 110.03506 * 238.56441 * 21 17 16 37 37 H 1.09001 * 110.03317 * 0.02562 * 21 17 16 38 38 H 1.09004 * 117.49881 * 359.97438 * 22 9 7 39 39 H 1.08997 * 117.49907 * 145.01644 * 22 9 7 40 40 H 1.09000 * 117.50159 * 214.98228 * 23 9 7 41 41 H 1.08998 * 117.50086 * 359.97349 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4070 2.0983 -1.3962 5 1 1.4942 2.6252 0.7878 6 1 3.5886 1.4160 0.6085 7 6 2.0046 -1.1940 -0.0005 8 1 1.4709 -2.1258 0.1150 9 6 3.5036 -1.1985 -0.1560 10 6 4.0360 -0.5554 -1.4382 11 7 3.5998 -1.3403 -2.5957 12 6 4.0302 -1.0156 -3.8309 13 8 4.8430 -0.1263 -3.9759 14 6 3.5065 -1.7509 -5.0220 15 8 2.6268 -2.5758 -4.8873 16 7 4.0113 -1.4976 -6.2457 17 6 3.4975 -2.2180 -7.4134 18 6 4.2620 -3.5457 -7.5936 19 6 4.3932 -3.7020 -9.1298 20 6 4.6434 -2.2483 -9.6020 21 6 3.7394 -1.3934 -8.6898 22 6 4.2680 -2.4010 0.4013 23 6 4.3458 -1.0478 1.1124 24 1 -0.4850 0.8401 0.0004 25 1 3.6505 0.4607 -1.5220 26 1 5.1251 -0.5294 -1.4063 27 1 3.0013 -2.0937 -2.4731 28 1 4.7146 -0.8384 -6.3534 29 1 2.4322 -2.4141 -7.2919 30 1 5.2472 -3.4845 -7.1311 31 1 3.6926 -4.3741 -7.1723 32 1 3.4705 -4.0939 -9.5577 33 1 5.2380 -4.3419 -9.3852 34 1 4.3522 -2.1308 -10.6458 35 1 5.6898 -1.9754 -9.4658 36 1 2.7916 -1.1901 -9.1883 37 1 4.2394 -0.4575 -8.4406 38 1 3.6868 -3.1887 0.8807 39 1 5.1504 -2.7337 -0.1453 40 1 5.2794 -0.4907 1.0334 41 1 3.8158 -0.9449 2.0592 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321538380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:15 Heat of formation + Delta-G solvation = -79.296875 kcal Electronic energy + Delta-G solvation = -22013.116653 eV Core-core repulsion = 18699.322351 eV Total energy + Delta-G solvation = -3313.794302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79730 -40.11888 -38.78937 -38.56073 -35.46267 -34.48490 -34.30728 -29.67841 -29.48595 -28.62859 -27.36675 -24.77057 -23.19085 -21.69693 -21.43286 -21.41195 -21.06628 -19.58837 -18.32148 -18.07007 -17.28394 -16.97906 -16.71997 -16.48224 -16.06129 -15.55153 -15.47719 -14.94319 -14.80694 -14.69037 -14.28154 -14.12797 -13.87916 -13.17429 -13.02834 -12.82423 -12.65572 -12.53873 -12.17782 -12.09766 -12.03631 -11.95889 -11.79263 -11.51299 -11.47046 -11.09532 -10.79563 -10.76180 -10.37663 -10.28796 -10.10372 -8.33285 -6.37111 0.31335 1.28597 1.33192 1.36228 1.46602 2.10402 2.31741 2.61769 2.97389 3.32586 3.46249 3.59017 3.67106 3.93998 3.97104 4.22765 4.41068 4.41974 4.46034 4.48231 4.51761 4.58058 4.69328 4.77397 4.85417 4.91824 5.01282 5.01625 5.07889 5.19003 5.22632 5.26309 5.27213 5.41611 5.46038 5.52381 5.65444 5.96335 6.26865 6.38429 6.69023 6.73646 6.92933 7.30108 8.81755 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.004006 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.762515 B = 6987.866088 C = 7215.198709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.221 1.221 7 C -0.482 4.482 8 H 0.040 0.960 9 C -0.048 4.048 10 C 0.154 3.846 11 N -0.672 5.672 12 C 0.497 3.503 13 O -0.552 6.552 14 C 0.510 3.490 15 O -0.542 6.542 16 N -0.682 5.682 17 C 0.129 3.871 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.158 4.158 23 C -0.175 4.175 24 H 0.265 0.735 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.417 0.583 28 H 0.419 0.581 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -3.791 -17.390 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.143 1.143 7 C -0.519 4.519 8 H 0.058 0.942 9 C -0.049 4.049 10 C 0.031 3.969 11 N -0.322 5.322 12 C 0.277 3.723 13 O -0.432 6.432 14 C 0.291 3.709 15 O -0.419 6.419 16 N -0.335 5.335 17 C 0.026 3.974 18 C -0.175 4.175 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.166 4.166 22 C -0.195 4.195 23 C -0.213 4.213 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.253 0.747 28 H 0.257 0.743 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.561 -3.635 -17.374 21.745 hybrid contribution -0.540 0.813 0.465 1.081 sum 12.021 -2.822 -16.909 20.938 Atomic orbital electron populations 1.70037 1.08195 1.27968 1.51767 1.25667 0.95029 1.02432 0.93790 0.86173 0.81546 0.79632 0.77856 1.21248 1.22161 1.14286 1.20414 0.89310 0.92990 1.49222 0.94197 1.19436 0.92553 1.01842 0.91055 1.21173 0.98331 0.93271 0.84107 1.45786 1.47675 1.33348 1.05413 1.20370 0.82482 0.84340 0.85061 1.90686 1.33829 1.32346 1.86320 1.20068 0.82791 0.82826 0.85254 1.90768 1.30823 1.34344 1.85995 1.45985 1.39932 1.42325 1.05268 1.22021 0.98823 0.92495 0.84077 1.22803 1.00271 0.96031 0.98382 1.22481 1.02681 0.97501 0.92934 1.22361 0.99791 0.93937 0.99515 1.22463 1.01893 0.98784 0.93483 1.22854 1.01602 0.91159 1.03903 1.23117 1.01179 1.00301 0.96718 0.92584 0.94120 0.90078 0.74671 0.74320 0.90486 0.91165 0.92210 0.90746 0.90100 0.89750 0.90759 0.89670 0.90174 0.89882 0.87937 0.88230 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 2 C 0.03 1.67 5.46 84.65 0.46 2.14 16 3 Si 0.92 43.91 24.69 68.60 1.69 45.61 16 4 H -0.29 -13.84 6.96 99.48 0.69 -13.15 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.22 -9.30 6.11 99.48 0.61 -8.69 16 7 C -0.48 -26.10 9.19 25.60 0.24 -25.86 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 9 C -0.05 -2.05 0.85 -52.93 -0.04 -2.09 16 10 C 0.15 6.32 5.08 86.38 0.44 6.76 16 11 N -0.67 -26.88 5.46 -464.42 -2.54 -29.42 16 12 C 0.50 18.50 7.88 87.27 0.69 19.19 16 13 O -0.55 -21.38 16.47 -3.26 -0.05 -21.43 16 14 C 0.51 17.03 7.88 87.27 0.69 17.72 16 15 O -0.54 -20.99 16.16 -3.24 -0.05 -21.04 16 16 N -0.68 -16.91 5.03 -440.43 -2.22 -19.13 16 17 C 0.13 2.65 3.23 45.72 0.15 2.80 16 18 C -0.14 -2.49 6.54 31.70 0.21 -2.28 16 19 C -0.12 -1.46 6.91 31.91 0.22 -1.24 16 20 C -0.12 -1.25 6.83 31.67 0.22 -1.04 16 21 C -0.13 -1.78 6.57 31.32 0.21 -1.57 16 22 C -0.16 -5.66 9.96 30.62 0.30 -5.35 16 23 C -0.18 -6.48 8.69 30.62 0.27 -6.21 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.04 1.84 4.27 -2.39 -0.01 1.83 16 26 H 0.08 2.94 8.06 -2.39 -0.02 2.93 16 27 H 0.42 17.22 7.83 -92.71 -0.73 16.50 16 28 H 0.42 9.00 7.79 -92.71 -0.72 8.28 16 29 H 0.08 1.89 7.59 -2.39 -0.02 1.87 16 30 H 0.07 1.31 8.05 -2.39 -0.02 1.29 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.66 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.04 7.61 -2.39 -0.02 1.02 16 38 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -67.43 336.01 0.65 -66.78 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.51 Total: 33.42 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 4.03 Total: 2.96 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.46 Total: -106.30 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.11 Total: -42.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.69 Total: 45.61 kcal Total: -67.43 0.65 -66.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321538380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.518 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds