Wall clock time and date at job start Tue Mar 31 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99656 * 2 1 4 4 H 1.48504 * 109.47050 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47780 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00416 * 3 2 1 7 7 C 1.37866 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00680 * 181.97845 * 7 2 1 9 9 C 1.50701 * 120.00101 * 1.97084 * 7 2 1 10 10 C 1.52998 * 115.54921 * 84.65088 * 9 7 2 11 11 N 1.46503 * 109.46821 * 57.84489 * 10 9 7 12 12 C 1.34773 * 119.99942 * 185.19676 * 11 10 9 13 13 O 1.21354 * 120.00528 * 5.58568 * 12 11 10 14 14 C 1.49450 * 119.99820 * 185.59193 * 12 11 10 15 15 O 1.21346 * 120.00419 * 354.48220 * 14 12 11 16 16 N 1.34788 * 119.99874 * 174.48710 * 14 12 11 17 17 C 1.46497 * 119.99895 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47133 * 179.97438 * 17 16 14 19 19 C 1.53783 * 113.61234 * 274.13532 * 18 17 16 20 20 C 1.53955 * 87.01764 * 220.04815 * 19 18 17 21 21 C 1.53777 * 113.61613 * 176.52683 * 18 17 16 22 22 C 1.53001 * 117.50022 * 230.33020 * 9 7 2 23 23 C 1.52999 * 117.49771 * 298.98951 * 9 7 2 24 24 H 0.97006 * 119.99794 * 5.01042 * 1 2 3 25 25 H 1.08995 * 109.47350 * 297.84310 * 10 9 7 26 26 H 1.09008 * 109.47061 * 177.84052 * 10 9 7 27 27 H 0.97000 * 120.00273 * 5.19221 * 11 10 9 28 28 H 0.96996 * 119.99884 * 359.97438 * 16 14 12 29 29 H 1.09003 * 109.47040 * 299.99696 * 17 16 14 30 30 H 1.08997 * 109.47351 * 59.99327 * 17 16 14 31 31 H 1.08997 * 112.85068 * 45.32985 * 18 17 16 32 32 H 1.08992 * 113.61252 * 334.56527 * 19 18 17 33 33 H 1.09000 * 113.61096 * 105.47147 * 19 18 17 34 34 H 1.09004 * 113.53520 * 270.81162 * 20 19 18 35 35 H 1.09002 * 113.66871 * 139.93327 * 20 19 18 36 36 H 1.09001 * 113.61620 * 254.53280 * 21 18 17 37 37 H 1.09006 * 113.61187 * 25.34482 * 21 18 17 38 38 H 1.09003 * 117.49409 * 214.99847 * 22 9 7 39 39 H 1.08995 * 117.50313 * 0.02562 * 22 9 7 40 40 H 1.08996 * 117.50228 * 359.96876 * 23 9 7 41 41 H 1.09002 * 117.49989 * 144.97158 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0841 -1.1943 0.0318 9 6 1.2518 -2.4987 -0.0460 10 6 0.8517 -2.9814 -1.4416 11 7 2.0505 -3.1212 -2.2722 12 6 1.9329 -3.4349 -3.5776 13 8 0.8345 -3.5021 -4.0891 14 6 3.1554 -3.7003 -4.3953 15 8 4.2562 -3.5361 -3.9119 16 7 3.0352 -4.1220 -5.6699 17 6 4.2335 -4.3826 -6.4713 18 6 3.8210 -4.8469 -7.8695 19 6 3.5620 -6.3597 -7.9649 20 6 4.2661 -6.3126 -9.3331 21 6 5.0088 -5.0673 -8.8209 22 6 1.6179 -3.5620 0.9914 23 6 0.2941 -2.8023 1.1079 24 1 -0.4850 0.8369 -0.0734 25 1 0.1766 -2.2569 -1.8970 26 1 0.3500 -3.9459 -1.3625 27 1 2.9287 -2.9879 -1.8826 28 1 2.1553 -4.2535 -6.0562 29 1 4.8233 -3.4694 -6.5505 30 1 4.8293 -5.1594 -5.9919 31 1 3.0243 -4.2396 -8.2992 32 1 4.0996 -6.9426 -7.2171 33 1 2.5050 -6.6188 -8.0254 34 1 3.5905 -6.1073 -10.1635 35 1 4.9195 -7.1652 -9.5186 36 1 5.1182 -4.2845 -9.5715 37 1 5.9431 -5.2948 -8.3075 38 1 1.5737 -4.6056 0.6795 39 1 2.4029 -3.3178 1.7071 40 1 0.2089 -2.0586 1.9002 41 1 -0.6211 -3.3457 0.8727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322218393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:55 Heat of formation + Delta-G solvation = -37.359814 kcal Electronic energy + Delta-G solvation = -21524.050619 eV Core-core repulsion = 18212.074845 eV Total energy + Delta-G solvation = -3311.975774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30311 -39.17408 -37.99842 -36.70410 -34.70847 -33.23000 -31.97343 -28.92036 -26.90315 -25.94311 -25.42535 -23.85307 -22.19735 -21.16148 -20.24242 -19.63945 -19.30504 -18.03130 -16.62126 -16.08880 -16.05412 -15.57837 -15.17895 -14.88510 -14.69330 -14.30762 -14.25464 -13.76762 -13.37658 -12.94375 -12.77719 -12.72683 -12.27839 -11.99785 -11.85067 -11.61104 -11.29480 -10.96191 -10.93812 -10.92894 -10.70068 -10.58759 -10.54251 -10.25547 -9.62219 -9.19451 -9.17732 -9.07495 -8.52014 -8.41116 -8.11451 -6.08821 -4.17957 1.83147 2.72534 3.29430 3.34353 3.37389 3.64254 4.02354 4.26476 4.33522 4.36944 4.41313 4.53758 4.93893 4.98878 5.15810 5.20244 5.33651 5.38967 5.41925 5.47171 5.57994 5.64046 5.70205 5.89153 5.97043 6.12522 6.27303 6.31096 6.40535 6.45707 6.67632 6.76166 7.03142 7.07964 7.25967 7.35020 7.49095 7.81225 7.89601 8.18874 8.31380 8.57438 8.83923 9.49984 10.99213 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.003484 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.258748 B = 8034.941317 C = 8583.989174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.159 3.841 11 N -0.664 5.664 12 C 0.495 3.505 13 O -0.541 6.541 14 C 0.507 3.493 15 O -0.521 6.521 16 N -0.706 5.706 17 C 0.127 3.873 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.131 4.131 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.262 0.738 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.413 0.587 28 H 0.412 0.588 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -10.770 -14.721 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.022 3.978 10 C 0.037 3.963 11 N -0.313 5.313 12 C 0.274 3.726 13 O -0.420 6.420 14 C 0.288 3.712 15 O -0.396 6.396 16 N -0.360 5.360 17 C 0.004 3.996 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.180 4.180 21 C -0.169 4.169 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.250 0.750 28 H 0.248 0.752 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.246 -10.572 -14.620 19.092 hybrid contribution 0.354 1.024 -0.028 1.083 sum 6.599 -9.548 -14.649 18.690 Atomic orbital electron populations 1.69980 1.05841 1.27104 1.48229 1.24971 0.94840 0.98982 0.94177 0.86692 0.79683 0.83095 0.78783 1.20122 1.21255 1.20132 1.20337 0.92428 0.88514 1.52549 0.92075 1.19017 0.99497 0.93676 0.85628 1.21163 0.85139 0.98568 0.91476 1.45822 1.12795 1.64931 1.07793 1.19924 0.88736 0.80097 0.83796 1.90710 1.27257 1.52674 1.71367 1.20510 0.90029 0.77846 0.82776 1.90746 1.27502 1.50082 1.71293 1.45743 1.10849 1.67230 1.12186 1.21464 0.87212 1.01326 0.89580 1.22844 0.99787 0.97266 0.94603 1.23049 1.01287 0.95577 0.97643 1.22837 0.99560 0.98345 0.97257 1.22869 0.97253 0.98309 0.98424 1.23066 1.00153 0.95564 1.06036 1.22476 0.91124 1.01308 1.03063 0.92799 0.90388 0.93940 0.75014 0.75236 0.91017 0.91019 0.88352 0.89806 0.91186 0.90148 0.91347 0.91142 0.89690 0.91592 0.90217 0.89484 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.27 12.72 55.43 0.71 -23.57 16 2 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.08 8.38 -34.44 -0.29 -13.37 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.02 0.53 1.51 -155.66 -0.23 0.30 16 10 C 0.16 3.56 5.57 -4.04 -0.02 3.53 16 11 N -0.66 -13.60 5.37 -60.73 -0.33 -13.92 16 12 C 0.50 9.55 7.88 -11.59 -0.09 9.46 16 13 O -0.54 -11.27 16.46 5.49 0.09 -11.18 16 14 C 0.51 8.53 7.89 -11.58 -0.09 8.44 16 15 O -0.52 -9.81 16.49 5.50 0.09 -9.72 16 16 N -0.71 -9.09 5.55 -60.73 -0.34 -9.42 16 17 C 0.13 1.32 5.50 -4.04 -0.02 1.30 16 18 C -0.13 -0.97 3.75 -89.81 -0.34 -1.31 16 19 C -0.14 -0.99 7.65 -25.83 -0.20 -1.19 16 20 C -0.14 -0.88 8.09 -25.83 -0.21 -1.09 16 21 C -0.13 -0.86 7.65 -25.92 -0.20 -1.06 16 22 C -0.21 -4.40 9.94 -26.69 -0.27 -4.66 16 23 C -0.14 -3.21 9.26 -26.69 -0.25 -3.45 16 24 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.08 1.97 8.09 -51.93 -0.42 1.55 16 26 H 0.04 0.89 8.11 -51.92 -0.42 0.47 16 27 H 0.41 8.39 7.73 -40.82 -0.32 8.07 16 28 H 0.41 4.83 7.96 -40.82 -0.32 4.50 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -29.38 349.25 -8.33 -37.71 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.49 Total: 10.11 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.30 Total: -1.20 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.04 Total: -46.92 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.18 Total: -20.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.38 -8.33 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322218393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.352 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds