Wall clock time and date at job start Tue Mar 31 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99656 * 2 1 4 4 H 1.48504 * 109.47050 * 239.99879 * 3 2 1 5 5 H 1.48496 * 109.47780 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00416 * 3 2 1 7 7 C 1.37866 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00680 * 181.97845 * 7 2 1 9 9 C 1.50701 * 120.00101 * 1.97084 * 7 2 1 10 10 C 1.52998 * 115.54921 * 84.65088 * 9 7 2 11 11 N 1.46503 * 109.46821 * 57.84489 * 10 9 7 12 12 C 1.34773 * 119.99942 * 185.19676 * 11 10 9 13 13 O 1.21354 * 120.00528 * 5.58568 * 12 11 10 14 14 C 1.49450 * 119.99820 * 185.59193 * 12 11 10 15 15 O 1.21346 * 120.00419 * 354.48220 * 14 12 11 16 16 N 1.34788 * 119.99874 * 174.48710 * 14 12 11 17 17 C 1.46497 * 119.99895 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47133 * 179.97438 * 17 16 14 19 19 C 1.53783 * 113.61234 * 274.13532 * 18 17 16 20 20 C 1.53955 * 87.01764 * 220.04815 * 19 18 17 21 21 C 1.53777 * 113.61613 * 176.52683 * 18 17 16 22 22 C 1.53001 * 117.50022 * 230.33020 * 9 7 2 23 23 C 1.52999 * 117.49771 * 298.98951 * 9 7 2 24 24 H 0.97006 * 119.99794 * 5.01042 * 1 2 3 25 25 H 1.08995 * 109.47350 * 297.84310 * 10 9 7 26 26 H 1.09008 * 109.47061 * 177.84052 * 10 9 7 27 27 H 0.97000 * 120.00273 * 5.19221 * 11 10 9 28 28 H 0.96996 * 119.99884 * 359.97438 * 16 14 12 29 29 H 1.09003 * 109.47040 * 299.99696 * 17 16 14 30 30 H 1.08997 * 109.47351 * 59.99327 * 17 16 14 31 31 H 1.08997 * 112.85068 * 45.32985 * 18 17 16 32 32 H 1.08992 * 113.61252 * 334.56527 * 19 18 17 33 33 H 1.09000 * 113.61096 * 105.47147 * 19 18 17 34 34 H 1.09004 * 113.53520 * 270.81162 * 20 19 18 35 35 H 1.09002 * 113.66871 * 139.93327 * 20 19 18 36 36 H 1.09001 * 113.61620 * 254.53280 * 21 18 17 37 37 H 1.09006 * 113.61187 * 25.34482 * 21 18 17 38 38 H 1.09003 * 117.49409 * 214.99847 * 22 9 7 39 39 H 1.08995 * 117.50313 * 0.02562 * 22 9 7 40 40 H 1.08996 * 117.50228 * 359.96876 * 23 9 7 41 41 H 1.09002 * 117.49989 * 144.97158 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0841 -1.1943 0.0318 9 6 1.2518 -2.4987 -0.0460 10 6 0.8517 -2.9814 -1.4416 11 7 2.0505 -3.1212 -2.2722 12 6 1.9329 -3.4349 -3.5776 13 8 0.8345 -3.5021 -4.0891 14 6 3.1554 -3.7003 -4.3953 15 8 4.2562 -3.5361 -3.9119 16 7 3.0352 -4.1220 -5.6699 17 6 4.2335 -4.3826 -6.4713 18 6 3.8210 -4.8469 -7.8695 19 6 3.5620 -6.3597 -7.9649 20 6 4.2661 -6.3126 -9.3331 21 6 5.0088 -5.0673 -8.8209 22 6 1.6179 -3.5620 0.9914 23 6 0.2941 -2.8023 1.1079 24 1 -0.4850 0.8369 -0.0734 25 1 0.1766 -2.2569 -1.8970 26 1 0.3500 -3.9459 -1.3625 27 1 2.9287 -2.9879 -1.8826 28 1 2.1553 -4.2535 -6.0562 29 1 4.8233 -3.4694 -6.5505 30 1 4.8293 -5.1594 -5.9919 31 1 3.0243 -4.2396 -8.2992 32 1 4.0996 -6.9426 -7.2171 33 1 2.5050 -6.6188 -8.0254 34 1 3.5905 -6.1073 -10.1635 35 1 4.9195 -7.1652 -9.5186 36 1 5.1182 -4.2845 -9.5715 37 1 5.9431 -5.2948 -8.3075 38 1 1.5737 -4.6056 0.6795 39 1 2.4029 -3.3178 1.7071 40 1 0.2089 -2.0586 1.9002 41 1 -0.6211 -3.3457 0.8727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322218393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:55 Heat of formation + Delta-G solvation = -56.353833 kcal Electronic energy + Delta-G solvation = -21524.874262 eV Core-core repulsion = 18212.074845 eV Total energy + Delta-G solvation = -3312.799417 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66424 -40.07704 -39.30584 -38.45946 -35.92697 -34.80723 -33.97915 -29.91402 -28.51210 -27.37640 -26.47693 -25.01040 -23.24556 -22.88320 -21.47449 -21.30291 -20.28740 -19.45023 -18.09876 -17.78106 -17.13637 -16.82610 -16.60688 -16.32576 -16.13687 -15.71524 -15.40767 -15.05103 -14.76562 -14.43175 -14.28340 -13.70862 -13.49519 -13.30347 -12.96707 -12.92196 -12.82545 -12.75669 -12.60532 -12.40694 -12.01627 -11.52319 -11.44122 -11.29194 -11.16609 -10.99956 -10.68772 -10.42801 -10.29395 -10.17836 -9.88961 -8.12368 -6.25278 0.38488 1.39972 1.41556 1.42928 1.49251 2.17391 2.41229 2.73169 3.16379 3.42727 3.59215 3.66574 3.71254 3.81552 4.00444 4.20974 4.29523 4.48823 4.50860 4.63492 4.66767 4.67107 4.89344 4.90252 4.93274 4.95317 5.02555 5.10459 5.12993 5.18389 5.28532 5.35428 5.37571 5.54180 5.61344 5.67492 5.75522 6.00805 6.34734 6.46939 6.78831 6.81869 7.01497 7.44610 8.94960 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.003484 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.258748 B = 8034.941317 C = 8583.989174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.508 4.508 8 H 0.057 0.943 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.667 5.667 12 C 0.494 3.506 13 O -0.558 6.558 14 C 0.512 3.488 15 O -0.544 6.544 16 N -0.686 5.686 17 C 0.125 3.875 18 C -0.124 4.124 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.181 4.181 23 C -0.148 4.148 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.415 0.585 28 H 0.419 0.581 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.444 -11.761 -15.909 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.546 4.546 8 H 0.076 0.924 9 C -0.004 4.004 10 C 0.050 3.950 11 N -0.317 5.317 12 C 0.275 3.725 13 O -0.438 6.438 14 C 0.293 3.707 15 O -0.421 6.421 16 N -0.339 5.339 17 C 0.003 3.997 18 C -0.143 4.143 19 C -0.178 4.178 20 C -0.175 4.175 21 C -0.166 4.166 22 C -0.218 4.218 23 C -0.186 4.186 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.251 0.749 28 H 0.256 0.744 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.298 -11.582 -15.841 20.937 hybrid contribution 0.033 1.283 0.295 1.317 sum 7.331 -10.299 -15.545 20.037 Atomic orbital electron populations 1.70083 1.06919 1.27450 1.49601 1.25621 0.95518 1.01770 0.94316 0.85836 0.78539 0.79879 0.78727 1.20179 1.21247 1.19501 1.20630 0.92490 0.89878 1.51609 0.92448 1.19065 1.00588 0.94077 0.86628 1.20825 0.85279 0.98078 0.90809 1.45764 1.12179 1.65441 1.08318 1.20381 0.89498 0.79110 0.83513 1.90695 1.28275 1.53222 1.71612 1.20016 0.88539 0.78495 0.83697 1.90742 1.27676 1.51737 1.71978 1.45766 1.12290 1.65013 1.10827 1.21691 0.86105 1.01300 0.90599 1.22868 1.00695 0.97671 0.93042 1.23075 1.01500 0.94922 0.98332 1.22827 0.99494 0.98340 0.96812 1.22887 0.96844 0.98722 0.98125 1.23063 0.98634 0.96186 1.03941 1.22399 0.92542 1.01553 1.02094 0.93117 0.93988 0.92512 0.74883 0.74406 0.91332 0.90878 0.87839 0.90070 0.91105 0.89480 0.90703 0.90465 0.89464 0.88878 0.89983 0.91771 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.87 12.72 21.44 0.27 -50.59 16 2 C 0.03 1.55 5.43 84.65 0.46 2.01 16 3 Si 0.94 43.21 29.54 68.60 2.03 45.24 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.51 -26.60 8.38 25.60 0.21 -26.38 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.00 -0.13 1.51 -52.93 -0.08 -0.21 16 10 C 0.17 7.75 5.57 86.38 0.48 8.23 16 11 N -0.67 -27.17 5.37 -464.40 -2.49 -29.66 16 12 C 0.49 18.86 7.88 87.27 0.69 19.55 16 13 O -0.56 -23.05 16.46 -3.26 -0.05 -23.11 16 14 C 0.51 16.78 7.89 87.27 0.69 17.47 16 15 O -0.54 -20.04 16.49 -3.23 -0.05 -20.09 16 16 N -0.69 -16.72 5.55 -464.40 -2.58 -19.30 16 17 C 0.13 2.39 5.50 86.38 0.47 2.87 16 18 C -0.12 -1.66 3.75 -10.27 -0.04 -1.70 16 19 C -0.14 -1.73 7.65 31.18 0.24 -1.50 16 20 C -0.14 -1.37 8.09 31.18 0.25 -1.12 16 21 C -0.13 -1.39 7.65 31.12 0.24 -1.15 16 22 C -0.18 -7.23 9.94 30.62 0.30 -6.93 16 23 C -0.15 -6.63 9.26 30.62 0.28 -6.34 16 24 H 0.26 14.16 8.32 -92.70 -0.77 13.39 16 25 H 0.04 2.16 8.09 -2.39 -0.02 2.14 16 26 H 0.06 2.34 8.11 -2.38 -0.02 2.32 16 27 H 0.41 16.70 7.73 -92.71 -0.72 15.98 16 28 H 0.42 9.18 7.96 -92.71 -0.74 8.45 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.05 7.92 -2.39 -0.02 1.03 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.92 8.10 -2.38 -0.02 0.90 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -62.13 349.25 0.91 -61.21 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.42 Total: 31.51 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.20 Total: 4.78 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.80 Total: -99.55 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.11 Total: -43.20 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -62.13 0.91 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322218393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.861 kcal (2) G-P(sol) polarization free energy of solvation -62.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds