Wall clock time and date at job start Tue Mar 31 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48504 * 109.47280 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47335 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47271 * 60.00253 * 3 2 1 7 7 C 1.38951 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99922 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99609 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.46790 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47063 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47424 * 59.99820 * 14 13 12 16 16 N 1.46498 * 109.46963 * 59.99792 * 15 14 13 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 15 14 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 C 1.52994 * 117.49943 * 248.75083 * 19 17 16 21 21 C 1.52991 * 117.50225 * 180.09120 * 19 17 16 22 22 C 1.52997 * 109.47114 * 299.99999 * 15 14 13 23 23 C 1.52999 * 109.47362 * 60.00042 * 12 10 9 24 24 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99947 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47218 * 299.99806 * 12 10 9 27 27 H 1.08997 * 109.47326 * 59.99977 * 13 12 10 28 28 H 1.09003 * 109.47067 * 299.99881 * 13 12 10 29 29 H 1.09003 * 109.46883 * 299.99751 * 14 13 12 30 30 H 1.08997 * 109.47445 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.47434 * 180.02562 * 15 14 13 32 32 H 0.97001 * 120.00384 * 335.00737 * 16 15 14 33 33 H 1.09000 * 115.54637 * 34.42075 * 19 17 16 34 34 H 1.09005 * 117.50098 * 359.97438 * 20 19 17 35 35 H 1.09004 * 117.49838 * 145.01994 * 20 19 17 36 36 H 1.08998 * 117.50043 * 214.98404 * 21 19 17 37 37 H 1.09006 * 117.50115 * 359.97334 * 21 19 17 38 38 H 1.08997 * 109.47293 * 179.97438 * 22 15 14 39 39 H 1.09003 * 109.47189 * 300.00067 * 22 15 14 40 40 H 1.09000 * 109.47204 * 299.99634 * 23 12 10 41 41 H 1.09003 * 109.47147 * 59.99720 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8629 0.0011 13 6 2.2377 -6.0259 0.0016 14 6 1.4727 -7.3509 0.0016 15 6 0.5934 -7.4321 -1.2479 16 7 1.4360 -7.3547 -2.4438 17 6 1.0114 -7.8946 -3.6034 18 8 -0.0705 -8.4400 -3.6582 19 6 1.8808 -7.8205 -4.8321 20 6 1.4068 -6.9271 -5.9801 21 6 1.3417 -8.4501 -6.1180 22 6 -0.4008 -6.2692 -1.2484 23 6 0.3634 -4.9442 -1.2477 24 1 -0.4850 0.8401 0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6172 -4.9204 0.8914 27 1 2.8644 -5.9678 0.8916 28 1 2.8644 -5.9686 -0.8884 29 1 0.8457 -7.4084 0.8914 30 1 2.1809 -8.1794 0.0015 31 1 0.0480 -8.3759 -1.2477 32 1 2.3014 -6.9186 -2.4001 33 1 2.9542 -7.8826 -4.6529 34 1 0.4659 -6.3931 -5.8468 35 1 2.1684 -6.4017 -6.5564 36 1 2.0604 -8.9262 -6.7850 37 1 0.3583 -8.9183 -6.0754 38 1 -1.0269 -6.3268 -2.1387 39 1 -1.0277 -6.3268 -0.3585 40 1 -0.3449 -4.1157 -1.2476 41 1 0.9897 -4.8867 -2.1380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322413697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:56 Heat of formation + Delta-G solvation = -74.030715 kcal Electronic energy + Delta-G solvation = -22286.453616 eV Core-core repulsion = 18972.887672 eV Total energy + Delta-G solvation = -3313.565944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38629 -38.98257 -37.35822 -35.98541 -34.01853 -33.43478 -31.35777 -30.50413 -29.81234 -25.36715 -24.55598 -22.66745 -22.57567 -22.34286 -20.39432 -19.47419 -18.69842 -17.88611 -17.65007 -16.08978 -15.84827 -15.33878 -15.27381 -14.64473 -14.50380 -14.07388 -13.92018 -13.61346 -13.42918 -13.06334 -12.65948 -12.37747 -12.09380 -12.02491 -11.80851 -11.70580 -11.51891 -11.11240 -10.99063 -10.78387 -10.67423 -10.55858 -10.35868 -10.31005 -10.12246 -10.00742 -9.82628 -9.53638 -8.97867 -8.32019 -7.98004 -6.43338 -3.84154 2.48244 3.12846 3.14626 3.25399 3.32297 3.73848 3.89107 4.15848 4.56277 4.65557 4.72839 4.74043 4.87888 4.89979 5.01334 5.20276 5.25585 5.38829 5.44238 5.45014 5.58294 5.62391 5.64210 5.72975 5.78900 5.83284 5.95071 5.96069 6.11773 6.18120 6.31208 6.34132 6.48265 6.58555 6.66424 6.68471 7.53507 7.53660 8.04878 8.24093 8.59324 9.16152 9.54138 10.05066 10.74293 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.004061 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.578033 B = 6893.215245 C = 7479.663835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.444 3.556 11 O -0.598 6.598 12 C -0.098 4.098 13 C -0.093 4.093 14 C -0.128 4.128 15 C 0.146 3.854 16 N -0.715 5.715 17 C 0.543 3.457 18 O -0.547 6.547 19 C -0.196 4.196 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.107 4.107 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.403 0.597 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -14.672 -6.321 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.195 5.195 10 C 0.230 3.770 11 O -0.484 6.484 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.166 4.166 15 C 0.042 3.958 16 N -0.367 5.367 17 C 0.330 3.670 18 O -0.425 6.425 19 C -0.217 4.217 20 C -0.189 4.189 21 C -0.187 4.187 22 C -0.167 4.167 23 C -0.145 4.145 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.240 -14.879 -6.330 16.171 hybrid contribution 0.254 1.238 0.128 1.271 sum 0.494 -13.640 -6.202 14.992 Atomic orbital electron populations 1.69619 1.05940 1.28073 1.50504 1.25262 0.95613 0.99722 0.97287 0.85821 0.79708 0.81209 0.77737 1.19238 1.20746 1.20732 1.19771 0.93390 0.82381 1.47556 0.87931 1.41925 1.09237 1.04673 1.63693 1.19902 0.88114 0.84924 0.84081 1.90501 1.14028 1.87418 1.56467 1.21178 0.97274 0.94398 0.99116 1.21243 0.97030 0.91747 1.03120 1.21891 0.99119 0.98494 0.97063 1.20980 0.91653 0.99233 0.83959 1.46097 1.22528 1.58437 1.09627 1.19639 0.86174 0.77447 0.83779 1.90670 1.22471 1.44493 1.84909 1.22215 1.00197 1.09851 0.89475 1.22950 1.03474 0.93712 0.98755 1.22936 1.03475 0.95718 0.96549 1.21918 0.97655 0.94543 1.02536 1.21479 0.98382 0.97077 0.97589 0.91899 0.77392 0.90037 0.91017 0.91773 0.90336 0.91406 0.89699 0.76066 0.85945 0.88158 0.87739 0.88095 0.87513 0.91530 0.90905 0.91248 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.05 5.18 -10.96 -0.06 -14.11 16 10 C 0.44 10.22 7.11 -10.99 -0.08 10.14 16 11 O -0.60 -15.80 15.56 5.55 0.09 -15.72 16 12 C -0.10 -1.65 2.53 -91.77 -0.23 -1.88 16 13 C -0.09 -1.35 4.32 -26.73 -0.12 -1.47 16 14 C -0.13 -1.43 5.61 -26.73 -0.15 -1.58 16 15 C 0.15 1.76 2.78 -67.93 -0.19 1.57 16 16 N -0.72 -8.56 4.23 -53.81 -0.23 -8.78 16 17 C 0.54 7.09 7.58 -10.98 -0.08 7.01 16 18 O -0.55 -8.91 15.92 5.55 0.09 -8.82 16 19 C -0.20 -2.01 6.19 -91.78 -0.57 -2.57 16 20 C -0.15 -1.44 10.24 -26.70 -0.27 -1.71 16 21 C -0.15 -1.38 10.05 -26.70 -0.27 -1.65 16 22 C -0.13 -1.67 5.60 -26.76 -0.15 -1.82 16 23 C -0.11 -1.65 4.94 -26.75 -0.13 -1.79 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 25 H 0.39 9.51 7.32 -40.82 -0.30 9.21 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 28 H 0.06 0.96 6.46 -51.93 -0.34 0.62 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.07 7.57 -51.93 -0.39 0.67 16 32 H 0.40 4.48 6.87 -40.82 -0.28 4.20 16 33 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.14 7.56 -51.93 -0.39 0.75 16 41 H 0.06 1.04 7.60 -51.93 -0.39 0.65 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -32.07 334.83 -8.07 -40.14 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.23 Total: 13.77 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.48 Total: -3.73 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.44 Total: -46.57 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.17 Total: -24.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.07 -8.07 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322413697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.893 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds