Wall clock time and date at job start Tue Mar 31 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48504 * 109.47280 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47335 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47271 * 60.00253 * 3 2 1 7 7 C 1.38951 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99922 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99609 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.46790 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47063 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47424 * 59.99820 * 14 13 12 16 16 N 1.46498 * 109.46963 * 59.99792 * 15 14 13 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 15 14 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 15 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 15 20 20 C 1.52994 * 117.49943 * 248.75083 * 19 17 16 21 21 C 1.52991 * 117.50225 * 180.09120 * 19 17 16 22 22 C 1.52997 * 109.47114 * 299.99999 * 15 14 13 23 23 C 1.52999 * 109.47362 * 60.00042 * 12 10 9 24 24 H 0.97000 * 119.99869 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99947 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47218 * 299.99806 * 12 10 9 27 27 H 1.08997 * 109.47326 * 59.99977 * 13 12 10 28 28 H 1.09003 * 109.47067 * 299.99881 * 13 12 10 29 29 H 1.09003 * 109.46883 * 299.99751 * 14 13 12 30 30 H 1.08997 * 109.47445 * 179.97438 * 14 13 12 31 31 H 1.09004 * 109.47434 * 180.02562 * 15 14 13 32 32 H 0.97001 * 120.00384 * 335.00737 * 16 15 14 33 33 H 1.09000 * 115.54637 * 34.42075 * 19 17 16 34 34 H 1.09005 * 117.50098 * 359.97438 * 20 19 17 35 35 H 1.09004 * 117.49838 * 145.01994 * 20 19 17 36 36 H 1.08998 * 117.50043 * 214.98404 * 21 19 17 37 37 H 1.09006 * 117.50115 * 359.97334 * 21 19 17 38 38 H 1.08997 * 109.47293 * 179.97438 * 22 15 14 39 39 H 1.09003 * 109.47189 * 300.00067 * 22 15 14 40 40 H 1.09000 * 109.47204 * 299.99634 * 23 12 10 41 41 H 1.09003 * 109.47147 * 59.99720 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8629 0.0011 13 6 2.2377 -6.0259 0.0016 14 6 1.4727 -7.3509 0.0016 15 6 0.5934 -7.4321 -1.2479 16 7 1.4360 -7.3547 -2.4438 17 6 1.0114 -7.8946 -3.6034 18 8 -0.0705 -8.4400 -3.6582 19 6 1.8808 -7.8205 -4.8321 20 6 1.4068 -6.9271 -5.9801 21 6 1.3417 -8.4501 -6.1180 22 6 -0.4008 -6.2692 -1.2484 23 6 0.3634 -4.9442 -1.2477 24 1 -0.4850 0.8401 0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6172 -4.9204 0.8914 27 1 2.8644 -5.9678 0.8916 28 1 2.8644 -5.9686 -0.8884 29 1 0.8457 -7.4084 0.8914 30 1 2.1809 -8.1794 0.0015 31 1 0.0480 -8.3759 -1.2477 32 1 2.3014 -6.9186 -2.4001 33 1 2.9542 -7.8826 -4.6529 34 1 0.4659 -6.3931 -5.8468 35 1 2.1684 -6.4017 -6.5564 36 1 2.0604 -8.9262 -6.7850 37 1 0.3583 -8.9183 -6.0754 38 1 -1.0269 -6.3268 -2.1387 39 1 -1.0277 -6.3268 -0.3585 40 1 -0.3449 -4.1157 -1.2476 41 1 0.9897 -4.8867 -2.1380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322413697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:55 Heat of formation + Delta-G solvation = -94.973866 kcal Electronic energy + Delta-G solvation = -22287.361779 eV Core-core repulsion = 18972.887672 eV Total energy + Delta-G solvation = -3314.474107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49294 -40.43755 -38.74399 -36.91342 -36.00158 -34.65986 -33.26978 -31.71169 -31.05030 -27.17380 -25.65316 -24.00856 -23.53202 -23.30009 -21.34039 -21.00468 -20.12120 -19.79253 -18.56092 -17.77213 -16.94968 -16.76473 -16.30844 -16.20380 -15.83065 -15.54310 -15.12412 -15.06147 -14.70352 -14.56627 -13.80318 -13.54051 -13.51642 -13.33216 -13.13353 -13.09024 -12.86789 -12.44498 -12.42451 -12.12945 -12.09826 -11.79783 -11.54239 -11.52175 -11.44936 -11.39056 -11.19870 -10.85291 -10.22274 -10.01700 -10.00007 -8.47636 -5.96521 1.35467 1.40856 1.51232 1.54906 2.04914 2.21258 2.29198 2.94730 3.18004 3.21706 3.68753 3.75859 3.81734 3.90102 3.94398 3.99421 4.17002 4.22057 4.25448 4.46821 4.49335 4.53106 4.57960 4.73640 4.75899 4.89568 4.93564 5.02493 5.05870 5.12551 5.17656 5.22272 5.24377 5.38681 5.40606 5.46291 5.59996 6.00041 6.56597 6.58038 7.11478 7.25559 7.56547 8.11000 8.69885 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.004061 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.578033 B = 6893.215245 C = 7479.663835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.634 6.634 12 C -0.087 4.087 13 C -0.089 4.089 14 C -0.113 4.113 15 C 0.146 3.854 16 N -0.711 5.711 17 C 0.538 3.462 18 O -0.585 6.585 19 C -0.205 4.205 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.119 4.119 23 C -0.098 4.098 24 H 0.277 0.723 25 H 0.395 0.605 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.408 0.592 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 -15.386 -6.388 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.229 3.771 11 O -0.522 6.522 12 C -0.109 4.109 13 C -0.127 4.127 14 C -0.150 4.150 15 C 0.042 3.958 16 N -0.362 5.362 17 C 0.326 3.674 18 O -0.466 6.466 19 C -0.226 4.226 20 C -0.189 4.189 21 C -0.180 4.180 22 C -0.158 4.158 23 C -0.136 4.136 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.245 0.755 33 H 0.164 0.836 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.525 -15.597 -6.390 16.863 hybrid contribution 0.162 1.451 0.148 1.468 sum 0.688 -14.145 -6.241 15.476 Atomic orbital electron populations 1.69682 1.06889 1.29219 1.50353 1.26040 0.96499 1.02440 0.96255 0.84887 0.78102 0.77146 0.78315 1.19665 1.19671 1.19608 1.19739 0.92723 0.84172 1.49854 0.90263 1.42010 1.09277 1.04851 1.64526 1.21016 0.88038 0.86328 0.81706 1.90469 1.15978 1.88265 1.57516 1.21175 0.97584 0.91591 1.00523 1.21215 0.96582 0.92497 1.02409 1.21813 0.99190 0.96831 0.97195 1.21004 0.91682 0.98687 0.84436 1.46122 1.22627 1.57907 1.09540 1.20144 0.85969 0.76668 0.84665 1.90648 1.24157 1.46223 1.85542 1.22328 1.00925 1.10761 0.88539 1.23010 1.03296 0.94039 0.98597 1.22996 1.03234 0.95493 0.96301 1.21853 0.97658 0.93316 1.02943 1.21363 0.97788 0.98194 0.96265 0.91328 0.77127 0.88206 0.91929 0.92478 0.88447 0.89370 0.89469 0.75488 0.83603 0.89885 0.85663 0.85415 0.89300 0.92667 0.89004 0.92603 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.34 -19.02 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.27 5.18 -306.98 -1.59 -30.86 16 10 C 0.44 20.59 7.11 87.65 0.62 21.21 16 11 O -0.63 -34.22 15.56 -3.07 -0.05 -34.27 16 12 C -0.09 -2.87 2.53 -11.54 -0.03 -2.90 16 13 C -0.09 -2.44 4.32 30.60 0.13 -2.31 16 14 C -0.11 -2.18 5.61 30.59 0.17 -2.01 16 15 C 0.15 3.24 2.78 44.99 0.13 3.36 16 16 N -0.71 -16.07 4.23 -442.53 -1.87 -17.94 16 17 C 0.54 13.60 7.58 87.66 0.66 14.26 16 18 O -0.58 -18.91 15.92 -3.04 -0.05 -18.96 16 19 C -0.20 -3.89 6.19 -11.54 -0.07 -3.96 16 20 C -0.15 -2.71 10.24 30.61 0.31 -2.40 16 21 C -0.14 -2.44 10.05 30.61 0.31 -2.14 16 22 C -0.12 -2.94 5.60 30.58 0.17 -2.77 16 23 C -0.10 -2.97 4.94 30.58 0.15 -2.82 16 24 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.39 19.51 7.32 -92.70 -0.68 18.83 16 26 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.06 1.85 8.10 -2.39 -0.02 1.84 16 28 H 0.06 1.64 6.46 -2.39 -0.02 1.63 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 2.00 7.57 -2.39 -0.02 1.98 16 32 H 0.41 8.50 6.87 -92.71 -0.64 7.86 16 33 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.86 7.67 -2.38 -0.02 1.84 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.84 7.56 -2.39 -0.02 1.82 16 41 H 0.05 1.69 7.60 -2.39 -0.02 1.67 16 Total: -1.00 -70.33 334.83 2.32 -68.01 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.27 Total: 39.65 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 3.84 Total: -0.88 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.18 Total: -98.38 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.10 Total: -53.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.33 2.32 -68.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322413697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.963 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds