Wall clock time and date at job start Tue Mar 31 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37880 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99822 * 359.72859 * 13 12 11 15 15 C 1.49445 * 119.99977 * 179.72558 * 13 12 11 16 16 O 1.21346 * 119.99959 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99983 * 180.02562 * 15 13 12 18 18 C 1.50243 * 130.83811 * 359.66254 * 17 15 13 19 19 C 1.56858 * 100.58563 * 234.63217 * 18 17 15 20 20 C 1.54849 * 103.35816 * 326.65322 * 19 18 17 21 21 C 1.50240 * 130.84032 * 180.02562 * 17 15 13 22 22 C 1.55846 * 101.04633 * 233.93111 * 21 17 15 23 23 C 1.55476 * 103.32943 * 326.97298 * 22 21 17 24 24 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 26 26 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 27 27 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 28 28 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 29 29 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 30 30 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 31 31 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 32 32 H 1.09000 * 115.85505 * 359.67721 * 18 17 15 33 33 H 1.09001 * 110.43185 * 208.30683 * 19 18 17 34 34 H 1.08996 * 111.04317 * 85.29837 * 19 18 17 35 35 H 1.08997 * 110.63128 * 241.79161 * 20 19 18 36 36 H 1.09003 * 110.76162 * 118.82965 * 20 19 18 37 37 H 1.08998 * 115.85708 * 359.60050 * 21 17 15 38 38 H 1.08998 * 110.63169 * 85.55253 * 22 21 17 39 39 H 1.09004 * 110.62457 * 208.56868 * 22 21 17 40 40 H 1.09009 * 110.61121 * 241.58921 * 23 22 21 41 41 H 1.08999 * 110.89569 * 118.55024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0400 -4.0176 0.0004 13 6 7.3651 -4.2638 0.0009 14 8 8.1537 -3.3414 -0.0039 15 6 7.8633 -5.6728 0.0076 16 8 7.0748 -6.5951 0.0121 17 7 9.1884 -5.9190 0.0087 18 6 10.3620 -4.9811 -0.0025 19 6 11.1428 -5.5116 -1.2552 20 6 10.8601 -7.0339 -1.2347 21 6 9.9466 -7.2160 0.0144 22 6 10.8748 -7.0139 1.2499 23 6 11.1588 -5.4853 1.2386 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6795 -0.8895 27 1 3.6587 -3.1501 -0.8904 28 1 3.6580 -3.1505 0.8896 29 1 5.9149 -2.1226 0.8900 30 1 5.9150 -2.1224 -0.8901 31 1 5.4097 -4.7549 0.0046 32 1 10.1209 -3.9182 -0.0190 33 1 12.2102 -5.3178 -1.1484 34 1 10.7623 -5.0626 -2.1726 35 1 11.7871 -7.5952 -1.1177 36 1 10.3377 -7.3421 -2.1404 37 1 9.3398 -8.1214 0.0251 38 1 10.3623 -7.3048 2.1669 39 1 11.8004 -7.5771 1.1310 40 1 12.2247 -5.2940 1.1140 41 1 10.7893 -5.0145 2.1496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322507013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:43 Heat of formation + Delta-G solvation = -59.502292 kcal Electronic energy + Delta-G solvation = -21639.049242 eV Core-core repulsion = 18326.113297 eV Total energy + Delta-G solvation = -3312.935944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20287 -39.65574 -37.99972 -35.73250 -33.37711 -31.79052 -31.46700 -30.88404 -29.82705 -27.66997 -25.21312 -23.09266 -22.58896 -21.58858 -20.71724 -20.00758 -19.48653 -17.82971 -16.94004 -16.73747 -16.22131 -16.11854 -15.50369 -15.32646 -14.43231 -14.39757 -13.97563 -13.54450 -13.46471 -13.24960 -12.91206 -12.73929 -12.66492 -12.17471 -12.08086 -11.97077 -11.79879 -11.66060 -11.20737 -11.12096 -11.06576 -10.92287 -10.45183 -10.15902 -9.96697 -9.77729 -9.42772 -9.24160 -9.20485 -9.05136 -8.56546 -6.06834 -4.05854 1.41649 2.13754 3.19746 3.30171 3.35228 3.37942 3.41297 4.09103 4.18889 4.31083 4.43270 4.45537 4.62627 4.79179 4.83620 4.89208 4.97623 5.05528 5.26844 5.31526 5.44151 5.50306 5.53183 5.56740 5.58520 5.72982 5.76990 5.83475 5.92926 5.94081 6.20060 6.38824 6.56410 6.73848 7.10618 7.19799 7.27335 7.33215 7.68837 7.74586 8.02451 8.49686 8.97357 9.54946 11.06444 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.002901 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.649781 B = 9649.660792 C =10001.245542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.692 5.692 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.532 3.468 16 O -0.526 6.526 17 N -0.607 5.607 18 C 0.118 3.882 19 C -0.134 4.134 20 C -0.132 4.132 21 C 0.126 3.874 22 C -0.132 4.132 23 C -0.132 4.132 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.412 0.588 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.268 -13.903 0.043 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.010 4.010 12 N -0.343 5.343 13 C 0.286 3.714 14 O -0.403 6.403 15 C 0.315 3.685 16 O -0.402 6.402 17 N -0.342 5.342 18 C 0.016 3.984 19 C -0.172 4.172 20 C -0.171 4.171 21 C 0.024 3.976 22 C -0.170 4.170 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.248 0.752 32 H 0.161 0.839 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.050 -13.567 0.043 29.371 hybrid contribution -0.037 0.558 -0.026 0.560 sum 26.013 -13.009 0.017 29.085 Atomic orbital electron populations 1.69909 1.06327 1.26973 1.50920 1.25032 0.94749 0.99230 0.94464 0.86770 0.80379 0.83534 0.78569 1.20240 1.21365 1.18911 1.21095 0.89262 0.94583 1.51153 0.90935 1.19499 0.97361 0.91238 0.96688 1.21745 0.90140 1.01267 1.02183 1.21838 0.96652 0.80071 1.02415 1.46023 1.06019 1.11088 1.71217 1.19968 0.83820 0.88931 0.78653 1.90651 1.54951 1.45601 1.49083 1.19871 0.81235 0.89780 0.77566 1.90762 1.54201 1.45982 1.49283 1.50333 1.03844 1.09960 1.70098 1.24413 0.82625 0.96631 0.94745 1.23138 1.00402 0.95337 0.98322 1.22936 0.99547 0.96734 0.97853 1.23760 0.90709 0.87627 0.95519 1.23048 0.99427 0.96602 0.97935 1.23046 1.00296 0.95378 0.98331 0.92671 0.96255 0.96680 0.91824 0.91797 0.91157 0.91126 0.75166 0.83928 0.90182 0.90913 0.90095 0.91044 0.86337 0.91005 0.90063 0.90093 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.69 -10.30 5.55 -60.73 -0.34 -10.64 16 13 C 0.51 7.63 7.88 -11.58 -0.09 7.54 16 14 O -0.53 -8.53 14.12 5.49 0.08 -8.46 16 15 C 0.53 7.55 8.06 -11.59 -0.09 7.46 16 16 O -0.53 -8.48 17.08 5.50 0.09 -8.39 16 17 N -0.61 -6.87 2.89 -146.14 -0.42 -7.30 16 18 C 0.12 1.09 4.86 -62.21 -0.30 0.78 16 19 C -0.13 -0.95 6.50 -23.67 -0.15 -1.10 16 20 C -0.13 -0.87 6.46 -24.25 -0.16 -1.03 16 21 C 0.13 1.05 5.24 -62.82 -0.33 0.72 16 22 C -0.13 -0.86 6.49 -23.90 -0.16 -1.02 16 23 C -0.13 -0.93 6.50 -23.88 -0.16 -1.09 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.41 5.73 7.94 -40.82 -0.32 5.41 16 32 H 0.14 1.56 5.86 -51.93 -0.30 1.25 16 33 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.36 7.85 -51.93 -0.41 -0.04 16 40 H 0.08 0.41 7.88 -51.92 -0.41 0.00 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -32.68 333.53 -8.02 -40.70 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.42 Total: 0.95 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.14 Total: -1.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.01 Total: -44.96 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.17 Total: -16.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.68 -8.02 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322507013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.801 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds