Wall clock time and date at job start Tue Mar 31 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99922 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00147 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00211 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99988 * 3 2 1 7 7 C 1.37880 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99822 * 359.72859 * 13 12 11 15 15 C 1.49445 * 119.99977 * 179.72558 * 13 12 11 16 16 O 1.21346 * 119.99959 * 0.02562 * 15 13 12 17 17 N 1.34774 * 119.99983 * 180.02562 * 15 13 12 18 18 C 1.50243 * 130.83811 * 359.66254 * 17 15 13 19 19 C 1.56858 * 100.58563 * 234.63217 * 18 17 15 20 20 C 1.54849 * 103.35816 * 326.65322 * 19 18 17 21 21 C 1.50240 * 130.84032 * 180.02562 * 17 15 13 22 22 C 1.55846 * 101.04633 * 233.93111 * 21 17 15 23 23 C 1.55476 * 103.32943 * 326.97298 * 22 21 17 24 24 H 0.96993 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 26 26 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 27 27 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 28 28 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 29 29 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 30 30 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 31 31 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 32 32 H 1.09000 * 115.85505 * 359.67721 * 18 17 15 33 33 H 1.09001 * 110.43185 * 208.30683 * 19 18 17 34 34 H 1.08996 * 111.04317 * 85.29837 * 19 18 17 35 35 H 1.08997 * 110.63128 * 241.79161 * 20 19 18 36 36 H 1.09003 * 110.76162 * 118.82965 * 20 19 18 37 37 H 1.08998 * 115.85708 * 359.60050 * 21 17 15 38 38 H 1.08998 * 110.63169 * 85.55253 * 22 21 17 39 39 H 1.09004 * 110.62457 * 208.56868 * 22 21 17 40 40 H 1.09009 * 110.61121 * 241.58921 * 23 22 21 41 41 H 1.08999 * 110.89569 * 118.55024 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 -0.0001 11 6 5.5517 -2.6364 -0.0001 12 7 6.0400 -4.0176 0.0004 13 6 7.3651 -4.2638 0.0009 14 8 8.1537 -3.3414 -0.0039 15 6 7.8633 -5.6728 0.0076 16 8 7.0748 -6.5951 0.0121 17 7 9.1884 -5.9190 0.0087 18 6 10.3620 -4.9811 -0.0025 19 6 11.1428 -5.5116 -1.2552 20 6 10.8601 -7.0339 -1.2347 21 6 9.9466 -7.2160 0.0144 22 6 10.8748 -7.0139 1.2499 23 6 11.1588 -5.4853 1.2386 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6807 0.8905 26 1 3.8752 -0.6795 -0.8895 27 1 3.6587 -3.1501 -0.8904 28 1 3.6580 -3.1505 0.8896 29 1 5.9149 -2.1226 0.8900 30 1 5.9150 -2.1224 -0.8901 31 1 5.4097 -4.7549 0.0046 32 1 10.1209 -3.9182 -0.0190 33 1 12.2102 -5.3178 -1.1484 34 1 10.7623 -5.0626 -2.1726 35 1 11.7871 -7.5952 -1.1177 36 1 10.3377 -7.3421 -2.1404 37 1 9.3398 -8.1214 0.0251 38 1 10.3623 -7.3048 2.1669 39 1 11.8004 -7.5771 1.1310 40 1 12.2247 -5.2940 1.1140 41 1 10.7893 -5.0145 2.1496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322507013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:42 Heat of formation + Delta-G solvation = -81.694469 kcal Electronic energy + Delta-G solvation = -21640.011567 eV Core-core repulsion = 18326.113297 eV Total energy + Delta-G solvation = -3313.898269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08810 -40.66501 -39.10122 -37.17135 -35.22873 -33.35287 -32.63633 -31.40967 -30.46013 -29.35507 -26.47899 -24.52473 -23.10452 -22.68616 -22.31035 -20.83684 -20.50318 -19.06183 -18.60479 -18.04612 -17.29167 -16.99956 -16.51435 -16.40770 -16.18864 -15.53505 -15.39200 -14.79000 -14.59463 -14.21564 -14.05915 -13.83232 -13.66285 -13.52922 -13.44940 -12.79779 -12.72687 -12.68566 -12.59897 -12.28083 -11.92517 -11.83708 -11.79661 -11.65863 -11.62669 -11.35320 -11.02715 -10.76639 -10.63371 -10.33852 -10.05325 -8.29495 -6.34271 0.28182 1.14600 1.37800 1.39423 1.51372 2.07064 2.35542 2.36760 3.06170 3.20726 3.48385 3.68380 3.68955 3.98763 4.07361 4.14071 4.20475 4.22571 4.34691 4.42257 4.44904 4.53348 4.61257 4.79452 4.83451 4.99194 5.02266 5.03360 5.04446 5.12592 5.19395 5.21750 5.33052 5.35844 5.43998 5.53085 5.63797 6.01968 6.26610 6.26935 6.58964 6.74052 6.87195 7.30545 8.87228 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039783 B = 0.002901 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.649781 B = 9649.660792 C =10001.245542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.009 4.009 10 C -0.105 4.105 11 C 0.126 3.874 12 N -0.690 5.690 13 C 0.506 3.494 14 O -0.539 6.539 15 C 0.526 3.474 16 O -0.557 6.557 17 N -0.607 5.607 18 C 0.104 3.896 19 C -0.127 4.127 20 C -0.124 4.124 21 C 0.113 3.887 22 C -0.124 4.124 23 C -0.126 4.126 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.417 0.583 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.008 -13.896 0.035 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.052 0.948 9 C -0.047 4.047 10 C -0.143 4.143 11 C 0.003 3.997 12 N -0.342 5.342 13 C 0.286 3.714 14 O -0.417 6.417 15 C 0.310 3.690 16 O -0.436 6.436 17 N -0.341 5.341 18 C 0.003 3.997 19 C -0.166 4.166 20 C -0.162 4.162 21 C 0.013 3.987 22 C -0.162 4.162 23 C -0.164 4.164 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.253 0.747 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 29.850 -13.583 0.035 32.795 hybrid contribution -1.201 0.475 -0.026 1.292 sum 28.649 -13.108 0.009 31.505 Atomic orbital electron populations 1.70066 1.08384 1.28214 1.52630 1.26042 0.95624 1.03657 0.94089 0.85638 0.79576 0.78076 0.79255 1.19133 1.21137 1.16688 1.21477 0.92050 0.93215 1.50482 0.94816 1.19447 0.93944 0.94150 0.97190 1.21526 0.91971 0.98592 1.02172 1.21548 0.94555 0.80891 1.02678 1.45920 1.06342 1.10673 1.71275 1.20213 0.83549 0.89494 0.78102 1.90647 1.55218 1.46134 1.49656 1.19664 0.82312 0.88868 0.78201 1.90740 1.55164 1.46284 1.51400 1.50616 1.03381 1.12249 1.67852 1.24580 0.82271 0.95531 0.97320 1.23140 1.01630 0.95335 0.96454 1.22947 1.00291 0.96659 0.96345 1.24085 0.90798 0.86105 0.97734 1.23060 1.00140 0.96524 0.96440 1.23054 1.01503 0.95392 0.96478 0.92483 0.95620 0.95726 0.91919 0.91927 0.90933 0.90834 0.74655 0.85997 0.87259 0.92176 0.86868 0.91933 0.86992 0.91867 0.86834 0.87161 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.39 6.54 99.48 0.65 -9.73 16 7 C -0.53 -30.67 9.66 25.60 0.25 -30.42 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 11 C 0.13 3.97 5.67 86.38 0.49 4.46 16 12 N -0.69 -20.37 5.55 -464.40 -2.58 -22.95 16 13 C 0.51 15.20 7.88 87.27 0.69 15.89 16 14 O -0.54 -17.30 14.12 -3.26 -0.05 -17.35 16 15 C 0.53 15.02 8.06 87.27 0.70 15.73 16 16 O -0.56 -18.27 17.08 -3.23 -0.06 -18.32 16 17 N -0.61 -13.30 2.89 -734.62 -2.12 -15.42 16 18 C 0.10 1.76 4.86 46.61 0.23 1.99 16 19 C -0.13 -1.46 6.50 32.58 0.21 -1.25 16 20 C -0.12 -1.27 6.46 32.20 0.21 -1.07 16 21 C 0.11 1.69 5.24 46.22 0.24 1.93 16 22 C -0.12 -1.26 6.49 32.43 0.21 -1.04 16 23 C -0.13 -1.44 6.50 32.44 0.21 -1.23 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.02 1.07 7.57 -2.39 -0.02 1.06 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.42 11.64 7.94 -92.71 -0.74 10.91 16 32 H 0.12 2.60 5.86 -2.39 -0.01 2.59 16 33 H 0.11 0.65 7.88 -2.39 -0.02 0.63 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.48 7.85 -2.39 -0.02 0.46 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 0.47 7.85 -2.39 -0.02 0.45 16 40 H 0.11 0.64 7.88 -2.38 -0.02 0.62 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -72.35 333.53 1.80 -70.55 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.71 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.18 Total: 1.57 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -4.40 Total: -98.17 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.10 Total: -35.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -72.35 1.80 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322507013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.144 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds