Wall clock time and date at job start Tue Mar 31 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21347 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.49446 * 119.99713 * 179.97438 * 13 12 11 16 16 O 1.21357 * 120.00188 * 359.97438 * 15 13 12 17 17 N 1.34780 * 120.00116 * 179.97438 * 15 13 12 18 18 C 1.46491 * 120.00088 * 179.97438 * 17 15 13 19 19 H 1.09003 * 109.35939 * 35.00473 * 18 17 15 20 20 C 1.50063 * 109.36136 * 275.27801 * 18 17 15 21 21 C 1.29446 * 124.07603 * 222.64114 * 20 18 17 22 22 C 1.50066 * 124.07735 * 0.48832 * 21 20 18 23 23 C 1.53031 * 110.14789 * 342.87165 * 22 21 20 24 24 C 1.53029 * 109.35948 * 154.72189 * 18 17 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 33 33 H 0.97003 * 119.99347 * 0.02562 * 17 15 13 34 34 H 1.07991 * 117.96435 * 42.66202 * 20 18 17 35 35 H 1.08005 * 117.96305 * 180.51451 * 21 20 18 36 36 H 1.08999 * 109.36209 * 103.07499 * 22 21 20 37 37 H 1.09002 * 109.36177 * 222.80019 * 22 21 20 38 38 H 1.08999 * 109.64512 * 169.11543 * 23 22 21 39 39 H 1.08999 * 109.64141 * 289.54007 * 23 22 21 40 40 H 1.08997 * 109.63907 * 289.33364 * 24 18 17 41 41 H 1.09004 * 109.63761 * 49.96087 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7896 -7.5930 -0.0280 15 6 2.9538 -8.5073 -0.0318 16 8 4.1469 -8.2856 -0.0313 17 7 2.5045 -9.7780 -0.0369 18 6 3.4564 -10.8914 -0.0423 19 1 4.3319 -10.6212 0.5482 20 6 3.8777 -11.1790 -1.4536 21 6 3.9970 -12.3699 -1.9465 22 6 3.7205 -13.6293 -1.1787 23 6 3.7033 -13.3378 0.3235 24 6 2.7942 -12.1280 0.5694 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 3.3857 -5.9235 -0.0201 33 1 1.5508 -9.9551 -0.0377 34 1 4.0952 -10.3401 -2.0980 35 1 4.3157 -12.4631 -2.9743 36 1 2.7531 -14.0311 -1.4798 37 1 4.4986 -14.3618 -1.3937 38 1 3.3153 -14.2034 0.8603 39 1 4.7145 -13.1175 0.6655 40 1 2.6649 -11.9816 1.6418 41 1 1.8247 -12.2945 0.0997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322570188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:47 Heat of formation + Delta-G solvation = -80.656846 kcal Electronic energy + Delta-G solvation = -20811.115935 eV Core-core repulsion = 17497.262661 eV Total energy + Delta-G solvation = -3313.853274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77776 -39.21826 -38.02332 -35.73964 -34.49790 -33.30019 -31.49457 -31.24622 -29.89163 -27.21537 -25.02022 -23.32028 -22.84233 -22.13752 -20.77148 -20.10634 -18.74603 -18.07030 -17.12151 -16.53854 -16.34931 -15.94435 -15.57969 -15.06817 -14.78687 -14.45689 -14.24112 -13.92150 -13.72328 -13.26656 -13.24411 -13.05657 -12.73946 -12.31360 -11.90145 -11.80353 -11.79853 -11.51507 -11.13167 -10.91542 -10.85534 -10.76221 -10.60686 -9.90486 -9.80377 -9.53464 -9.43699 -9.34810 -9.13272 -8.98167 -8.38207 -6.02979 -4.05919 1.41455 1.78769 2.46066 3.22463 3.30981 3.37343 3.40513 3.67004 4.21593 4.28989 4.43494 4.49106 4.52986 4.69968 4.90077 5.03479 5.08985 5.17230 5.32980 5.38283 5.43271 5.54014 5.59246 5.68947 5.76972 5.79307 5.99018 6.07832 6.25228 6.26943 6.52061 6.53835 6.69101 6.92411 6.94954 7.41070 7.61438 7.72801 7.73076 7.95392 8.05128 8.36657 9.00553 9.58367 11.08281 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.054027 B = 0.002301 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.131755 B =12166.636134 C =12386.537750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.698 5.698 18 C 0.174 3.826 19 H 0.101 0.899 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.095 4.095 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -27.873 -0.568 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.403 6.403 15 C 0.290 3.710 16 O -0.395 6.395 17 N -0.351 5.351 18 C 0.071 3.929 19 H 0.118 0.882 20 C -0.183 4.183 21 C -0.163 4.163 22 C -0.132 4.132 23 C -0.155 4.155 24 C -0.165 4.165 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.516 -27.710 -0.557 28.471 hybrid contribution 0.452 1.069 -0.187 1.175 sum 6.968 -26.641 -0.744 27.547 Atomic orbital electron populations 1.69966 1.06053 1.26708 1.50563 1.25035 0.94881 0.99345 0.95255 0.86565 0.79808 0.83343 0.78105 1.20656 1.21212 1.19866 1.21203 0.93052 0.90879 1.50941 0.92568 1.19033 0.93804 0.90789 0.97718 1.21927 0.99876 0.92955 1.01315 1.21846 0.91742 0.84723 1.02535 1.46076 1.12225 1.04998 1.70997 1.20016 0.88463 0.84522 0.79058 1.90758 1.16004 1.84709 1.48860 1.20388 0.88813 0.84483 0.77295 1.90763 1.16217 1.84750 1.47737 1.45840 1.11398 1.04493 1.73355 1.19864 0.92862 0.85517 0.94691 0.88172 1.22390 1.01182 0.97778 0.96972 1.22090 1.00340 0.94011 0.99846 1.20523 1.02200 0.96002 0.94471 1.21570 1.00255 0.97523 0.96126 1.21874 0.99592 0.93636 1.01445 0.92922 0.96183 0.96199 0.92441 0.92411 0.91081 0.91091 0.75312 0.75012 0.87502 0.87588 0.90583 0.90812 0.90910 0.91225 0.90597 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 11 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.43 5.55 -60.73 -0.34 -10.76 16 13 C 0.50 7.49 7.89 -11.58 -0.09 7.40 16 14 O -0.53 -8.94 16.48 5.50 0.09 -8.85 16 15 C 0.51 6.71 7.84 -11.59 -0.09 6.62 16 16 O -0.52 -7.78 16.14 5.49 0.09 -7.69 16 17 N -0.70 -7.15 5.04 -55.66 -0.28 -7.43 16 18 C 0.17 1.52 2.71 -69.38 -0.19 1.33 16 19 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 20 C -0.16 -1.46 9.33 -35.90 -0.33 -1.79 16 21 C -0.14 -1.03 9.80 -35.90 -0.35 -1.38 16 22 C -0.10 -0.51 6.11 -28.17 -0.17 -0.68 16 23 C -0.12 -0.60 6.01 -26.55 -0.16 -0.76 16 24 C -0.13 -0.78 5.46 -26.55 -0.15 -0.93 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.41 5.67 7.94 -40.82 -0.32 5.35 16 33 H 0.41 3.80 8.06 -40.82 -0.33 3.47 16 34 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.79 346.38 -8.25 -40.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.50 Total: 2.61 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.25 Total: -3.69 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.12 Total: -44.16 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.79 -8.25 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322570188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.614 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds