Wall clock time and date at job start Tue Mar 31 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46881 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99652 * 179.97438 * 12 11 10 14 14 O 1.21347 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.49446 * 119.99713 * 179.97438 * 13 12 11 16 16 O 1.21357 * 120.00188 * 359.97438 * 15 13 12 17 17 N 1.34780 * 120.00116 * 179.97438 * 15 13 12 18 18 C 1.46491 * 120.00088 * 179.97438 * 17 15 13 19 19 H 1.09003 * 109.35939 * 35.00473 * 18 17 15 20 20 C 1.50063 * 109.36136 * 275.27801 * 18 17 15 21 21 C 1.29446 * 124.07603 * 222.64114 * 20 18 17 22 22 C 1.50066 * 124.07735 * 0.48832 * 21 20 18 23 23 C 1.53031 * 110.14789 * 342.87165 * 22 21 20 24 24 C 1.53029 * 109.35948 * 154.72189 * 18 17 15 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 0.96993 * 120.00480 * 359.97438 * 12 11 10 33 33 H 0.97003 * 119.99347 * 0.02562 * 17 15 13 34 34 H 1.07991 * 117.96435 * 42.66202 * 20 18 17 35 35 H 1.08005 * 117.96305 * 180.51451 * 21 20 18 36 36 H 1.08999 * 109.36209 * 103.07499 * 22 21 20 37 37 H 1.09002 * 109.36177 * 222.80019 * 22 21 20 38 38 H 1.08999 * 109.64512 * 169.11543 * 23 22 21 39 39 H 1.08999 * 109.64141 * 289.54007 * 23 22 21 40 40 H 1.08997 * 109.63907 * 289.33364 * 24 18 17 41 41 H 1.09004 * 109.63761 * 49.96087 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4320 -6.1006 -0.0213 13 6 1.9827 -7.3713 -0.0269 14 8 0.7896 -7.5930 -0.0280 15 6 2.9538 -8.5073 -0.0318 16 8 4.1469 -8.2856 -0.0313 17 7 2.5045 -9.7780 -0.0369 18 6 3.4564 -10.8914 -0.0423 19 1 4.3319 -10.6212 0.5482 20 6 3.8777 -11.1790 -1.4536 21 6 3.9970 -12.3699 -1.9465 22 6 3.7205 -13.6293 -1.1787 23 6 3.7033 -13.3378 0.3235 24 6 2.7942 -12.1280 0.5694 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 3.3857 -5.9235 -0.0201 33 1 1.5508 -9.9551 -0.0377 34 1 4.0952 -10.3401 -2.0980 35 1 4.3157 -12.4631 -2.9743 36 1 2.7531 -14.0311 -1.4798 37 1 4.4986 -14.3618 -1.3937 38 1 3.3153 -14.2034 0.8603 39 1 4.7145 -13.1175 0.6655 40 1 2.6649 -11.9816 1.6418 41 1 1.8247 -12.2945 0.0997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322570188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:47 Heat of formation + Delta-G solvation = -102.218159 kcal Electronic energy + Delta-G solvation = -20812.050904 eV Core-core repulsion = 17497.262661 eV Total energy + Delta-G solvation = -3314.788243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84914 -40.16030 -38.93410 -37.19267 -35.57930 -35.02315 -33.05171 -32.02429 -30.59406 -28.93228 -26.34270 -24.65885 -23.39194 -23.18859 -22.38003 -21.27660 -19.78072 -18.80629 -18.51950 -18.04190 -17.34318 -17.15784 -16.69363 -16.40840 -16.14248 -16.00551 -15.13424 -15.02573 -14.59821 -14.28028 -14.20652 -13.80399 -13.76846 -13.55999 -13.52200 -13.30193 -12.92674 -12.76448 -12.55981 -12.40917 -12.08847 -11.70941 -11.60941 -11.55850 -11.42069 -11.24197 -10.73150 -10.55267 -10.36592 -10.28527 -10.05078 -8.19938 -6.30789 0.27409 1.04453 1.41679 1.42695 1.48795 1.53999 2.07614 2.41353 2.63545 3.13879 3.36947 3.67633 3.75972 4.02146 4.07157 4.17051 4.18739 4.36498 4.44221 4.51478 4.58911 4.70362 4.84741 4.86736 4.90528 5.00676 5.10510 5.13880 5.17103 5.21636 5.28315 5.40387 5.50972 5.63875 5.70016 5.83882 5.86909 5.91782 6.22348 6.31085 6.68411 6.86017 6.88425 7.38440 8.91935 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.054027 B = 0.002301 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.131755 B =12166.636134 C =12386.537750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.501 3.499 14 O -0.547 6.547 15 C 0.515 3.485 16 O -0.540 6.540 17 N -0.682 5.682 18 C 0.174 3.826 19 H 0.087 0.913 20 C -0.191 4.191 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.123 4.123 25 H 0.263 0.737 26 H -0.003 1.003 27 H -0.004 1.004 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.419 0.581 33 H 0.419 0.581 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -29.424 -0.485 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.282 3.718 14 O -0.425 6.425 15 C 0.295 3.705 16 O -0.417 6.417 17 N -0.335 5.335 18 C 0.071 3.929 19 H 0.105 0.895 20 C -0.210 4.210 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.153 4.153 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.257 0.743 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.698 -29.304 -0.475 30.301 hybrid contribution 0.066 1.451 -0.249 1.474 sum 7.764 -27.852 -0.724 28.923 Atomic orbital electron populations 1.70100 1.07793 1.27785 1.51622 1.25997 0.95787 1.03446 0.94821 0.85430 0.78659 0.78415 0.78429 1.19862 1.20927 1.18653 1.21677 0.93698 0.92120 1.50512 0.91791 1.18935 0.94345 0.92575 0.95443 1.21641 0.98637 0.91897 1.02211 1.21486 0.91586 0.84505 1.02024 1.45892 1.12266 1.04673 1.71027 1.20335 0.88506 0.84798 0.78162 1.90747 1.16997 1.85041 1.49748 1.20000 0.87985 0.84836 0.77686 1.90758 1.16681 1.85009 1.49292 1.45878 1.12159 1.03933 1.71487 1.20010 0.92310 0.85793 0.94805 0.89514 1.22255 1.03924 0.97870 0.96945 1.22357 0.97748 0.94227 1.00247 1.20614 1.03319 0.95102 0.94277 1.21595 0.99926 0.97554 0.96221 1.21891 0.99909 0.92656 1.01639 0.92783 0.98478 0.98540 0.91509 0.91435 0.91640 0.91734 0.74367 0.74278 0.89701 0.86931 0.89357 0.89359 0.89013 0.91558 0.89960 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.11 -4.11 5.27 30.59 0.16 -3.95 16 11 C 0.13 4.38 5.67 86.38 0.49 4.87 16 12 N -0.69 -20.41 5.55 -464.41 -2.58 -22.99 16 13 C 0.50 14.90 7.89 87.27 0.69 15.59 16 14 O -0.55 -18.48 16.48 -3.24 -0.05 -18.53 16 15 C 0.51 13.43 7.84 87.27 0.68 14.11 16 16 O -0.54 -16.12 16.14 -3.27 -0.05 -16.17 16 17 N -0.68 -13.59 5.04 -448.35 -2.26 -15.85 16 18 C 0.17 2.90 2.71 44.06 0.12 3.01 16 19 H 0.09 1.69 7.57 -2.39 -0.02 1.67 16 20 C -0.19 -3.29 9.33 27.03 0.25 -3.04 16 21 C -0.13 -1.61 9.80 27.03 0.27 -1.35 16 22 C -0.10 -0.76 6.11 29.66 0.18 -0.57 16 23 C -0.12 -0.88 6.01 30.71 0.18 -0.70 16 24 C -0.12 -1.27 5.46 30.71 0.17 -1.10 16 25 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 26 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.42 11.24 7.94 -92.71 -0.74 10.50 16 33 H 0.42 7.34 8.06 -92.71 -0.75 6.59 16 34 H 0.08 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.11 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.75 8.11 -2.38 -0.02 0.73 16 Total: -1.00 -68.34 346.38 0.95 -67.39 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.45 Total: 17.94 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.04 Total: -1.49 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.55 Total: -95.21 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.11 Total: -34.70 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -68.34 0.95 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322570188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.825 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds