Wall clock time and date at job start Tue Mar 31 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21348 * 120.00744 * 0.02562 * 13 12 11 15 15 C 1.49457 * 119.99493 * 180.02562 * 13 12 11 16 16 O 1.21347 * 120.00233 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99667 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99795 * 179.97438 * 17 15 13 19 19 H 1.09004 * 109.35627 * 325.27765 * 18 17 15 20 20 C 1.50066 * 109.35464 * 85.00484 * 18 17 15 21 21 C 1.29439 * 124.07438 * 137.36427 * 20 18 17 22 22 C 1.50071 * 124.07786 * 359.50039 * 21 20 18 23 23 C 1.53023 * 110.14460 * 17.13703 * 22 21 20 24 24 C 1.53027 * 109.35671 * 205.69385 * 18 17 15 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 33 33 H 0.96995 * 120.00011 * 0.02562 * 17 15 13 34 34 H 1.08002 * 117.96021 * 317.33079 * 20 18 17 35 35 H 1.08003 * 117.96153 * 179.52711 * 21 20 18 36 36 H 1.08998 * 109.35941 * 137.33863 * 22 21 20 37 37 H 1.09000 * 109.36051 * 256.93105 * 22 21 20 38 38 H 1.09001 * 109.64557 * 70.24472 * 23 22 21 39 39 H 1.08997 * 109.64621 * 190.66715 * 23 22 21 40 40 H 1.09005 * 109.64027 * 310.04219 * 24 18 17 41 41 H 1.09001 * 109.64441 * 70.67448 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9832 -7.3712 0.0015 14 8 0.7901 -7.5931 0.0024 15 6 2.9544 -8.5072 0.0014 16 8 4.1475 -8.2854 0.0010 17 7 2.5052 -9.7779 0.0029 18 6 3.4572 -10.8914 0.0023 19 1 4.3336 -10.6171 -0.5849 20 6 3.8761 -11.1884 1.4124 21 6 3.9947 -12.3826 1.8974 22 6 3.7195 -13.6368 1.1207 23 6 3.7048 -13.3352 -0.3795 24 6 2.7971 -12.1228 -0.6220 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.3861 -5.9233 0.0002 33 1 1.5515 -9.9551 0.0036 34 1 4.0926 -10.3538 2.0627 35 1 4.3110 -12.4826 2.9252 36 1 4.4960 -14.3715 1.3338 37 1 2.7515 -14.0406 1.4175 38 1 4.7160 -13.1088 -0.7176 39 1 3.3214 -14.1985 -0.9231 40 1 1.8260 -12.2932 -0.1570 41 1 2.6715 -11.9676 -1.6935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322570189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:50 Heat of formation + Delta-G solvation = -80.707915 kcal Electronic energy + Delta-G solvation = -20810.436858 eV Core-core repulsion = 17496.581369 eV Total energy + Delta-G solvation = -3313.855489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77771 -39.21561 -38.02296 -35.74004 -34.49751 -33.30192 -31.49388 -31.24733 -29.89265 -27.21678 -25.02100 -23.32170 -22.84266 -22.13834 -20.77248 -20.10917 -18.74696 -18.06711 -17.12151 -16.53940 -16.35231 -15.94493 -15.58084 -15.06819 -14.78763 -14.45356 -14.23760 -13.92360 -13.72309 -13.26883 -13.24600 -13.05770 -12.73611 -12.32276 -11.89837 -11.80238 -11.79840 -11.51192 -11.13401 -10.93351 -10.85837 -10.76488 -10.58344 -9.90937 -9.80521 -9.53620 -9.43740 -9.34858 -9.12065 -8.98226 -8.38691 -6.03241 -4.06137 1.41511 1.78707 2.46049 3.22468 3.29892 3.37495 3.41443 3.66975 4.21669 4.29100 4.43369 4.48725 4.52834 4.69870 4.90273 5.03376 5.08981 5.17324 5.32809 5.38324 5.43400 5.53854 5.59176 5.68878 5.76912 5.79271 5.98998 6.07774 6.25166 6.26869 6.52032 6.53765 6.69065 6.92435 6.94913 7.41090 7.61531 7.72798 7.72927 7.95302 8.05111 8.36544 9.00628 9.58283 11.08074 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.054065 B = 0.002300 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.772478 B =12169.184259 C =12387.997830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.526 6.526 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.698 5.698 18 C 0.174 3.826 19 H 0.100 0.900 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.095 4.095 23 C -0.117 4.117 24 C -0.128 4.128 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -27.886 0.452 28.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.403 6.403 15 C 0.290 3.710 16 O -0.395 6.395 17 N -0.351 5.351 18 C 0.071 3.929 19 H 0.118 0.882 20 C -0.183 4.183 21 C -0.163 4.163 22 C -0.132 4.132 23 C -0.155 4.155 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.538 -27.725 0.446 28.489 hybrid contribution 0.438 1.072 0.171 1.170 sum 6.976 -26.653 0.617 27.558 Atomic orbital electron populations 1.69975 1.06051 1.26603 1.50672 1.25036 0.94878 0.99356 0.95264 0.86514 0.80081 0.83681 0.77589 1.19724 1.20998 1.21003 1.21239 0.93094 0.90867 1.50793 0.92511 1.19038 0.93811 0.90807 0.97725 1.21926 0.99874 0.92950 1.01319 1.21848 0.91741 0.84726 1.02537 1.46073 1.12227 1.04999 1.70992 1.20016 0.88465 0.84521 0.79058 1.90758 1.16007 1.84705 1.48864 1.20388 0.88811 0.84483 0.77294 1.90760 1.16225 1.84746 1.47733 1.45841 1.11397 1.04489 1.73364 1.19865 0.92884 0.85533 0.94664 0.88177 1.22386 1.01186 0.97737 0.96998 1.22090 1.00340 0.94012 0.99848 1.20517 1.02217 0.96029 0.94419 1.21575 1.00275 0.97482 0.96135 1.21886 0.99618 0.93664 1.01384 0.92975 0.96188 0.96184 0.92435 0.92414 0.91080 0.91090 0.75309 0.75013 0.87495 0.87587 0.90803 0.90595 0.91265 0.90891 0.90737 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.42 5.55 -60.73 -0.34 -10.76 16 13 C 0.50 7.49 7.89 -11.58 -0.09 7.40 16 14 O -0.53 -8.94 16.48 5.50 0.09 -8.85 16 15 C 0.51 6.71 7.84 -11.58 -0.09 6.62 16 16 O -0.52 -7.77 16.13 5.50 0.09 -7.69 16 17 N -0.70 -7.15 5.04 -55.64 -0.28 -7.43 16 18 C 0.17 1.52 2.70 -69.37 -0.19 1.33 16 19 H 0.10 0.98 7.56 -51.93 -0.39 0.59 16 20 C -0.16 -1.46 9.33 -35.90 -0.33 -1.79 16 21 C -0.14 -1.03 9.80 -35.90 -0.35 -1.38 16 22 C -0.09 -0.50 6.12 -28.18 -0.17 -0.68 16 23 C -0.12 -0.60 6.01 -26.52 -0.16 -0.76 16 24 C -0.13 -0.78 5.48 -26.52 -0.15 -0.93 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.41 5.67 7.94 -40.82 -0.32 5.34 16 33 H 0.41 3.80 8.06 -40.82 -0.33 3.47 16 34 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -31.82 346.39 -8.25 -40.07 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.50 Total: 2.58 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.25 Total: -3.68 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.12 Total: -44.16 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.82 -8.25 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322570189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.639 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds