Wall clock time and date at job start Tue Mar 31 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46967 * 299.99871 * 3 2 1 6 6 H 1.48499 * 109.47197 * 59.99832 * 3 2 1 7 7 C 1.38818 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99781 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99813 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46971 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47475 * 294.99786 * 11 10 9 13 13 N 1.46495 * 109.47430 * 55.00029 * 11 10 9 14 14 C 1.34776 * 120.00573 * 204.99724 * 13 11 10 15 15 O 1.21616 * 119.99454 * 0.02562 * 14 13 11 16 16 C 1.47096 * 120.00534 * 179.97438 * 14 13 11 17 17 C 1.32087 * 118.87794 * 179.72716 * 16 14 13 18 18 C 1.50265 * 122.57713 * 180.14712 * 17 16 14 19 19 O 1.42893 * 110.14618 * 344.81280 * 18 17 16 20 20 C 1.43272 * 113.10065 * 50.32928 * 19 18 17 21 21 C 1.50422 * 118.87460 * 0.02562 * 16 14 13 22 22 C 1.53003 * 109.46999 * 175.00231 * 11 10 9 23 23 C 1.53001 * 117.51964 * 111.28362 * 22 11 10 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 11 25 25 H 0.96998 * 119.99897 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00294 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.46981 * 59.99936 * 10 9 7 28 28 H 1.08998 * 109.46837 * 299.99928 * 10 9 7 29 29 H 0.97002 * 119.99615 * 24.99601 * 13 11 10 30 30 H 1.07997 * 118.71093 * 0.37962 * 17 16 14 31 31 H 1.08997 * 109.50429 * 224.50104 * 18 17 16 32 32 H 1.09001 * 109.07428 * 104.84928 * 18 17 16 33 33 H 1.09002 * 109.63656 * 171.47445 * 20 19 18 34 34 H 1.08990 * 109.63757 * 50.85777 * 20 19 18 35 35 H 1.09003 * 109.44797 * 283.34628 * 21 16 14 36 36 H 1.08998 * 109.45942 * 43.28132 * 21 16 14 37 37 H 1.09002 * 115.54973 * 325.58146 * 22 11 10 38 38 H 1.09001 * 117.49733 * 214.97413 * 23 22 11 39 39 H 1.08995 * 117.49577 * 359.97438 * 23 22 11 40 40 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 41 41 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4982 -4.8135 0.9328 13 7 0.1441 -4.6764 -1.1299 14 6 -1.0803 -5.2372 -1.0780 15 8 -1.4216 -5.8620 -0.0920 16 6 -2.0042 -5.0929 -2.2135 17 6 -3.1967 -5.6562 -2.1412 18 6 -4.2038 -5.5642 -3.2527 19 8 -3.8310 -4.5344 -4.1704 20 6 -2.4699 -4.6352 -4.6060 21 6 -1.5561 -4.3144 -3.4201 22 6 1.8249 -6.1412 -0.1245 23 6 1.8346 -7.0697 1.0915 24 6 1.0023 -7.4312 -0.1404 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3880 0.0005 27 1 2.6849 -3.7145 0.8905 28 1 2.6849 -3.7145 -0.8895 29 1 0.4163 -4.1778 -1.9161 30 1 -3.4597 -6.2012 -1.2467 31 1 -5.1857 -5.3395 -2.8364 32 1 -4.2434 -6.5189 -3.7773 33 1 -2.2891 -3.9228 -5.4110 34 1 -2.2718 -5.6476 -4.9575 35 1 -1.6052 -3.2475 -3.2024 36 1 -0.5304 -4.5872 -3.6679 37 1 2.7234 -6.1096 -0.7408 38 1 2.7395 -7.6490 1.2752 39 1 1.2992 -6.7391 1.9814 40 1 -0.0809 -7.3384 -0.0610 41 1 1.3597 -8.2482 -0.7672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322985631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:42 Heat of formation + Delta-G solvation = -30.337421 kcal Electronic energy + Delta-G solvation = -22404.249140 eV Core-core repulsion = 19092.577880 eV Total energy + Delta-G solvation = -3311.671260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23199 -38.93268 -37.15005 -35.03233 -33.83257 -33.25440 -31.31801 -30.87242 -28.17697 -26.02928 -24.15913 -23.69188 -22.19496 -21.61398 -21.37904 -20.03870 -18.41034 -17.59183 -17.04646 -16.52363 -15.96585 -15.36234 -15.18283 -15.00188 -14.90173 -14.35484 -13.81436 -13.61234 -13.46483 -13.16121 -12.89902 -12.70471 -12.55226 -12.06299 -11.69221 -11.61163 -11.23936 -11.04083 -10.91020 -10.87506 -10.83172 -10.18820 -10.16424 -10.01747 -9.92801 -9.70464 -9.40700 -9.09458 -8.93717 -8.61144 -6.98108 -5.79446 -3.09697 1.41937 3.36460 3.41401 3.46764 3.47116 3.49306 3.77414 4.14795 4.54218 4.64904 4.74111 4.79743 4.88819 5.10262 5.15655 5.16735 5.22682 5.27758 5.41908 5.46734 5.53204 5.55609 5.66244 5.77697 5.84306 5.90406 5.95700 6.07292 6.21596 6.27633 6.35744 6.47976 6.48823 6.52329 6.66625 6.94107 6.95938 7.67025 7.87644 8.37874 8.52806 9.49900 10.05266 10.40854 11.42738 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012174 B = 0.005773 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.472382 B = 4849.183506 C = 6654.664619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.088 0.912 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.549 6.549 16 C -0.153 4.153 17 C -0.127 4.127 18 C 0.088 3.912 19 O -0.377 6.377 20 C 0.062 3.938 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.036 0.964 28 H 0.025 0.975 29 H 0.404 0.596 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -14.697 -7.874 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.106 0.894 13 N -0.349 5.349 14 C 0.342 3.658 15 O -0.430 6.430 16 C -0.156 4.156 17 C -0.146 4.146 18 C 0.011 3.989 19 O -0.295 6.295 20 C -0.014 4.014 21 C -0.161 4.161 22 C -0.183 4.183 23 C -0.208 4.208 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.240 0.760 30 H 0.152 0.848 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.246 -14.838 -7.230 16.822 hybrid contribution 0.645 1.030 -0.132 1.222 sum -2.601 -13.808 -7.362 15.863 Atomic orbital electron populations 1.69679 1.05093 1.25611 1.57380 1.24758 0.95505 0.97710 1.02808 0.86123 0.78761 0.84098 0.77202 1.20560 1.21852 1.21859 1.19251 0.91051 0.84010 1.43101 0.91071 1.42357 1.06002 0.99712 1.89584 1.20918 0.93007 0.85114 0.98968 1.20819 0.90164 0.92778 0.89962 0.89413 1.45882 1.14379 1.53895 1.20745 1.18311 0.81818 0.78756 0.86873 1.90677 1.76467 1.42453 1.33412 1.20912 0.95886 1.02283 0.96520 1.23615 0.94002 0.97010 1.00019 1.21548 0.97318 0.91670 0.88340 1.88143 1.28141 1.51083 1.62181 1.22645 0.81445 1.01491 0.95868 1.21120 1.00133 1.01736 0.93139 1.22652 1.01453 0.91455 1.02707 1.22883 1.02006 1.03134 0.92806 1.23252 1.00691 0.97443 1.00838 0.93502 0.78001 0.94662 0.95772 0.76003 0.84804 0.87194 0.91322 0.88052 0.92749 0.88459 0.89642 0.87895 0.89209 0.88746 0.86525 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.10 5.43 -59.91 -0.33 -18.42 16 10 C 0.15 2.90 5.80 -4.04 -0.02 2.87 16 11 C 0.17 2.87 2.43 -67.93 -0.17 2.71 16 12 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 13 N -0.70 -11.46 4.44 -54.99 -0.24 -11.70 16 14 C 0.55 9.32 7.06 -12.67 -0.09 9.23 16 15 O -0.55 -10.50 13.08 5.26 0.07 -10.43 16 16 C -0.15 -2.18 5.86 -103.09 -0.60 -2.78 16 17 C -0.13 -1.61 9.58 -36.44 -0.35 -1.96 16 18 C 0.09 0.90 7.04 35.79 0.25 1.15 16 19 O -0.38 -4.69 10.83 -35.23 -0.38 -5.07 16 20 C 0.06 0.65 6.88 37.21 0.26 0.91 16 21 C -0.12 -1.52 5.29 -27.96 -0.15 -1.67 16 22 C -0.16 -2.35 5.36 -90.61 -0.49 -2.83 16 23 C -0.17 -2.28 10.18 -26.73 -0.27 -2.56 16 24 C -0.19 -2.59 9.73 -26.73 -0.26 -2.85 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.39 10.26 7.33 -40.82 -0.30 9.96 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.40 6.31 6.91 -40.82 -0.28 6.03 16 30 H 0.13 1.74 7.29 -52.49 -0.38 1.36 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 40 H 0.12 1.89 5.02 -51.93 -0.26 1.63 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -32.01 335.15 -8.44 -40.45 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.17 Total: 15.18 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.14 Total: -5.02 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.15 Total: -57.33 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.31 Total: -15.50 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.01 -8.44 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322985631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.116 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds