Wall clock time and date at job start Tue Mar 31 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48502 * 109.46843 * 269.99825 * 3 2 1 5 5 H 1.48504 * 109.47331 * 29.99818 * 3 2 1 6 6 H 1.48499 * 109.47127 * 150.00100 * 3 2 1 7 7 C 1.38817 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47294 * 64.99703 * 11 10 9 13 13 N 1.46505 * 109.47024 * 304.99744 * 11 10 9 14 14 C 1.34777 * 119.99724 * 155.00353 * 13 11 10 15 15 O 1.21613 * 120.00252 * 359.97438 * 14 13 11 16 16 C 1.47104 * 119.99657 * 179.72600 * 14 13 11 17 17 C 1.32089 * 118.87570 * 180.02562 * 16 14 13 18 18 C 1.50262 * 122.57763 * 180.10530 * 17 16 14 19 19 O 1.42900 * 110.14862 * 344.83438 * 18 17 16 20 20 C 1.43264 * 113.09737 * 50.31942 * 19 18 17 21 21 C 1.50415 * 118.87659 * 0.26989 * 16 14 13 22 22 C 1.52999 * 109.47259 * 184.99884 * 11 10 9 23 23 C 1.53001 * 117.50043 * 248.74639 * 22 11 10 24 24 C 1.52991 * 117.50296 * 180.08428 * 22 11 10 25 25 H 0.96999 * 120.00064 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00310 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46957 * 59.99808 * 10 9 7 28 28 H 1.09002 * 109.46680 * 300.00288 * 10 9 7 29 29 H 0.97000 * 119.99792 * 334.99921 * 13 11 10 30 30 H 1.07997 * 118.70680 * 0.36960 * 17 16 14 31 31 H 1.09001 * 109.51094 * 224.51869 * 18 17 16 32 32 H 1.08998 * 109.06753 * 104.87155 * 18 17 16 33 33 H 1.08999 * 109.64027 * 171.47361 * 20 19 18 34 34 H 1.08993 * 109.64573 * 50.85671 * 20 19 18 35 35 H 1.08996 * 109.45717 * 283.37809 * 21 16 14 36 36 H 1.09004 * 109.45284 * 43.31693 * 21 16 14 37 37 H 1.09010 * 115.54747 * 34.41241 * 22 11 10 38 38 H 1.08992 * 117.49618 * 359.97438 * 23 22 11 39 39 H 1.08998 * 117.49687 * 145.01732 * 23 22 11 40 40 H 1.09006 * 117.50426 * 214.97913 * 24 22 11 41 41 H 1.09002 * 117.50103 * 359.97404 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4981 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1300 14 6 -1.0804 -5.2372 1.0781 15 8 -1.4218 -5.8619 0.0921 16 6 -2.0018 -5.0983 2.2163 17 6 -3.1963 -5.6574 2.1420 18 6 -4.2030 -5.5659 3.2537 19 8 -3.5687 -5.1294 4.4575 20 6 -2.7703 -3.9535 4.2777 21 6 -1.5537 -4.3199 3.4229 22 6 1.8247 -6.1412 0.1245 23 6 1.8347 -7.0691 -1.0920 24 6 1.0022 -7.4311 0.1405 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0002 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8905 29 1 0.4162 -4.1778 1.9163 30 1 -3.4579 -6.2053 1.2489 31 1 -4.6547 -6.5443 3.4174 32 1 -4.9781 -4.8522 2.9743 33 1 -2.4383 -3.5842 5.2480 34 1 -3.3564 -3.1866 3.7716 35 1 -0.8656 -4.9266 4.0114 36 1 -1.0493 -3.4090 3.1003 37 1 2.7233 -6.1095 0.7408 38 1 1.2989 -6.7383 -1.9816 39 1 2.7396 -7.6482 -1.2758 40 1 1.3598 -8.2484 0.7670 41 1 -0.0810 -7.3384 0.0620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322985632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:45 Heat of formation + Delta-G solvation = -30.907776 kcal Electronic energy + Delta-G solvation = -22412.045510 eV Core-core repulsion = 19100.349517 eV Total energy + Delta-G solvation = -3311.695993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22584 -38.92337 -37.14237 -35.03590 -33.82861 -33.25767 -31.31442 -30.87081 -28.17966 -26.01508 -24.16559 -23.68689 -22.18838 -21.60992 -21.37200 -20.03337 -18.41066 -17.58774 -17.05548 -16.51195 -15.91511 -15.46429 -15.08767 -15.03675 -14.87585 -14.33519 -13.85638 -13.65681 -13.38816 -13.14740 -12.91949 -12.75537 -12.49325 -12.08190 -11.68392 -11.58684 -11.24163 -11.03991 -10.92171 -10.85123 -10.82042 -10.21176 -10.17479 -10.01365 -9.93753 -9.71131 -9.41047 -9.08953 -8.94838 -8.60900 -7.00016 -5.81725 -3.11685 1.42153 3.37374 3.40459 3.45478 3.46582 3.46903 3.78190 4.15335 4.52737 4.66964 4.74749 4.81176 4.89536 5.14073 5.17950 5.19331 5.26334 5.28872 5.42029 5.50598 5.53861 5.63348 5.69081 5.78322 5.84757 5.85465 5.90655 6.08089 6.21343 6.27509 6.36491 6.47706 6.49453 6.53620 6.66459 6.94097 6.95908 7.64852 7.87783 8.35898 8.52977 9.47880 10.03231 10.38974 11.40494 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.005784 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.953817 B = 4839.521530 C = 6669.312739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.550 6.550 16 C -0.154 4.154 17 C -0.126 4.126 18 C 0.087 3.913 19 O -0.380 6.380 20 C 0.060 3.940 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.404 0.596 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 -12.845 7.004 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.106 0.894 13 N -0.349 5.349 14 C 0.343 3.657 15 O -0.430 6.430 16 C -0.157 4.157 17 C -0.145 4.145 18 C 0.011 3.989 19 O -0.299 6.299 20 C -0.016 4.016 21 C -0.161 4.161 22 C -0.183 4.183 23 C -0.208 4.208 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.240 0.760 30 H 0.152 0.848 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.943 -13.222 6.486 15.246 hybrid contribution 0.506 1.361 -0.038 1.452 sum -3.437 -11.861 6.448 13.931 Atomic orbital electron populations 1.69673 1.05100 1.25689 1.57472 1.24749 0.95512 0.97699 1.02820 0.86185 0.78623 0.83758 0.77566 1.21700 1.21783 1.20748 1.19216 0.91048 0.84024 1.43065 0.91110 1.42347 1.05979 0.99720 1.89598 1.20923 0.93025 0.85089 0.98995 1.20816 0.90160 0.92788 0.89941 0.89413 1.45884 1.14315 1.54025 1.20698 1.18315 0.81847 0.78723 0.86865 1.90676 1.76410 1.42380 1.33555 1.20915 0.96003 1.02591 0.96189 1.23618 0.94360 0.96435 1.00132 1.21548 0.93180 1.00983 0.83229 1.88100 1.65352 1.45217 1.31224 1.22667 0.91074 0.87169 1.00711 1.21118 0.99522 1.00873 0.94571 1.22649 1.01475 0.91469 1.02681 1.22893 1.02013 1.03162 0.92780 1.23259 1.00682 0.97450 1.00794 0.93495 0.78032 0.95732 0.94639 0.76004 0.84814 0.87312 0.91098 0.88053 0.92179 0.89561 0.88649 0.87893 0.88760 0.89208 0.89921 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.33 5.50 -17.42 -0.10 -0.42 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.92 5.43 -59.91 -0.33 -18.24 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 C 0.17 2.87 2.43 -67.93 -0.17 2.71 16 12 H 0.09 1.72 7.33 -51.93 -0.38 1.33 16 13 N -0.70 -11.45 4.44 -54.99 -0.24 -11.70 16 14 C 0.55 9.32 7.06 -12.66 -0.09 9.23 16 15 O -0.55 -10.50 13.08 5.27 0.07 -10.43 16 16 C -0.15 -2.19 5.86 -103.09 -0.60 -2.80 16 17 C -0.13 -1.60 9.58 -36.44 -0.35 -1.95 16 18 C 0.09 0.90 7.04 35.79 0.25 1.15 16 19 O -0.38 -4.57 10.83 -35.23 -0.38 -4.95 16 20 C 0.06 0.67 6.88 37.23 0.26 0.93 16 21 C -0.12 -1.52 5.29 -27.95 -0.15 -1.67 16 22 C -0.16 -2.37 5.36 -90.62 -0.49 -2.86 16 23 C -0.17 -2.31 10.18 -26.69 -0.27 -2.58 16 24 C -0.18 -2.63 9.73 -26.70 -0.26 -2.89 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.39 10.10 7.33 -40.82 -0.30 9.81 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.40 6.30 6.91 -40.82 -0.28 6.02 16 30 H 0.13 1.74 7.29 -52.49 -0.38 1.36 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.25 7.32 -51.93 -0.38 0.87 16 37 H 0.10 1.39 8.11 -51.92 -0.42 0.97 16 38 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.12 1.92 5.02 -51.93 -0.26 1.66 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -31.38 335.16 -8.44 -39.82 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -6.17 Total: 15.37 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.13 Total: -5.04 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.15 Total: -56.78 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.31 Total: -15.38 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.38 -8.44 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322985632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.912 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds