Wall clock time and date at job start Tue Mar 31 2020 02:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48502 * 109.46843 * 269.99825 * 3 2 1 5 5 H 1.48504 * 109.47331 * 29.99818 * 3 2 1 6 6 H 1.48499 * 109.47127 * 150.00100 * 3 2 1 7 7 C 1.38817 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99426 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47294 * 64.99703 * 11 10 9 13 13 N 1.46505 * 109.47024 * 304.99744 * 11 10 9 14 14 C 1.34777 * 119.99724 * 155.00353 * 13 11 10 15 15 O 1.21613 * 120.00252 * 359.97438 * 14 13 11 16 16 C 1.47104 * 119.99657 * 179.72600 * 14 13 11 17 17 C 1.32089 * 118.87570 * 180.02562 * 16 14 13 18 18 C 1.50262 * 122.57763 * 180.10530 * 17 16 14 19 19 O 1.42900 * 110.14862 * 344.83438 * 18 17 16 20 20 C 1.43264 * 113.09737 * 50.31942 * 19 18 17 21 21 C 1.50415 * 118.87659 * 0.26989 * 16 14 13 22 22 C 1.52999 * 109.47259 * 184.99884 * 11 10 9 23 23 C 1.53001 * 117.50043 * 248.74639 * 22 11 10 24 24 C 1.52991 * 117.50296 * 180.08428 * 22 11 10 25 25 H 0.96999 * 120.00064 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00310 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46957 * 59.99808 * 10 9 7 28 28 H 1.09002 * 109.46680 * 300.00288 * 10 9 7 29 29 H 0.97000 * 119.99792 * 334.99921 * 13 11 10 30 30 H 1.07997 * 118.70680 * 0.36960 * 17 16 14 31 31 H 1.09001 * 109.51094 * 224.51869 * 18 17 16 32 32 H 1.08998 * 109.06753 * 104.87155 * 18 17 16 33 33 H 1.08999 * 109.64027 * 171.47361 * 20 19 18 34 34 H 1.08993 * 109.64573 * 50.85671 * 20 19 18 35 35 H 1.08996 * 109.45717 * 283.37809 * 21 16 14 36 36 H 1.09004 * 109.45284 * 43.31693 * 21 16 14 37 37 H 1.09010 * 115.54747 * 34.41241 * 22 11 10 38 38 H 1.08992 * 117.49618 * 359.97438 * 23 22 11 39 39 H 1.08998 * 117.49687 * 145.01732 * 23 22 11 40 40 H 1.09006 * 117.50426 * 214.97913 * 24 22 11 41 41 H 1.09002 * 117.50103 * 359.97404 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4981 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1300 14 6 -1.0804 -5.2372 1.0781 15 8 -1.4218 -5.8619 0.0921 16 6 -2.0018 -5.0983 2.2163 17 6 -3.1963 -5.6574 2.1420 18 6 -4.2030 -5.5659 3.2537 19 8 -3.5687 -5.1294 4.4575 20 6 -2.7703 -3.9535 4.2777 21 6 -1.5537 -4.3199 3.4229 22 6 1.8247 -6.1412 0.1245 23 6 1.8347 -7.0691 -1.0920 24 6 1.0022 -7.4311 0.1405 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0002 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8905 29 1 0.4162 -4.1778 1.9163 30 1 -3.4579 -6.2053 1.2489 31 1 -4.6547 -6.5443 3.4174 32 1 -4.9781 -4.8522 2.9743 33 1 -2.4383 -3.5842 5.2480 34 1 -3.3564 -3.1866 3.7716 35 1 -0.8656 -4.9266 4.0114 36 1 -1.0493 -3.4090 3.1003 37 1 2.7233 -6.1095 0.7408 38 1 1.2989 -6.7383 -1.9816 39 1 2.7396 -7.6482 -1.2758 40 1 1.3598 -8.2484 0.7670 41 1 -0.0810 -7.3384 0.0620 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322985632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:44 Heat of formation + Delta-G solvation = -51.948694 kcal Electronic energy + Delta-G solvation = -22412.957912 eV Core-core repulsion = 19100.349517 eV Total energy + Delta-G solvation = -3312.608396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44435 -39.96417 -38.41445 -36.64764 -35.18505 -34.57655 -32.98770 -31.99593 -29.79400 -27.09750 -25.90963 -24.74923 -23.40551 -23.08764 -22.59784 -21.34421 -19.68638 -19.06413 -18.50711 -17.67595 -16.97681 -16.79141 -16.66222 -16.10971 -16.06643 -15.81134 -15.20424 -15.05086 -14.89456 -14.52410 -14.38274 -13.89454 -13.54792 -13.40904 -13.19847 -12.80893 -12.72325 -12.60645 -12.44427 -12.31662 -12.08189 -11.86032 -11.79892 -11.33255 -11.16189 -11.03273 -10.96893 -10.54429 -10.15892 -9.92054 -9.03086 -7.94885 -5.25004 0.31009 1.48550 1.49908 1.58220 2.13540 2.21400 2.55504 2.89161 3.02793 3.39277 3.54747 3.63658 3.71612 3.87396 3.93919 4.09567 4.14207 4.24820 4.27584 4.36051 4.43026 4.46906 4.55645 4.61087 4.71347 4.79117 4.81109 4.88095 4.93350 5.01775 5.08575 5.24414 5.27299 5.34539 5.46920 5.49967 5.57844 6.08462 6.25185 6.57045 7.22079 7.32758 8.04483 8.29455 9.27978 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.005784 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.953817 B = 4839.521530 C = 6669.312739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.177 3.823 12 H 0.057 0.943 13 N -0.698 5.698 14 C 0.548 3.452 15 O -0.580 6.580 16 C -0.180 4.180 17 C -0.110 4.110 18 C 0.086 3.914 19 O -0.389 6.389 20 C 0.061 3.939 21 C -0.117 4.117 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.183 4.183 25 H 0.250 0.750 26 H 0.374 0.626 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.408 0.592 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 -13.531 8.192 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.072 3.928 12 H 0.075 0.925 13 N -0.347 5.347 14 C 0.338 3.662 15 O -0.463 6.463 16 C -0.183 4.183 17 C -0.130 4.130 18 C 0.010 3.990 19 O -0.308 6.308 20 C -0.016 4.016 21 C -0.154 4.154 22 C -0.185 4.185 23 C -0.200 4.200 24 C -0.220 4.220 25 H 0.059 0.941 26 H 0.206 0.794 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.244 0.756 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.065 -13.933 7.686 16.205 hybrid contribution 0.215 1.489 -0.460 1.573 sum -2.850 -12.444 7.227 14.669 Atomic orbital electron populations 1.69834 1.06621 1.25995 1.59325 1.25544 0.96310 1.01006 1.03544 0.85145 0.77826 0.79537 0.77238 1.21861 1.22272 1.19164 1.19624 0.91592 0.85042 1.41395 0.90303 1.42505 1.05595 1.00887 1.89555 1.21038 0.93309 0.83846 0.99467 1.20579 0.89601 0.93525 0.89071 0.92471 1.45848 1.14352 1.54003 1.20464 1.18783 0.82050 0.78068 0.87284 1.90656 1.76939 1.43793 1.34919 1.20955 0.96316 1.04731 0.96312 1.23895 0.94165 0.94412 1.00566 1.21792 0.92473 1.02881 0.81879 1.88094 1.65460 1.45408 1.31817 1.22743 0.90428 0.86924 1.01471 1.21078 1.00251 1.00059 0.94039 1.22573 1.01835 0.90044 1.04085 1.22982 1.02671 1.02500 0.91859 1.23190 0.99354 0.97721 1.01712 0.94097 0.79442 0.94097 0.94478 0.75572 0.85445 0.84590 0.89430 0.86039 0.92445 0.88560 0.90031 0.86000 0.90062 0.86450 0.87798 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.24 -13.27 9.99 84.04 0.84 -12.43 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -36.68 5.43 -343.46 -1.87 -38.55 16 10 C 0.15 5.80 5.80 86.38 0.50 6.30 16 11 C 0.18 6.13 2.43 44.99 0.11 6.24 16 12 H 0.06 2.33 7.33 -2.39 -0.02 2.31 16 13 N -0.70 -23.25 4.44 -446.14 -1.98 -25.23 16 14 C 0.55 18.94 7.06 86.57 0.61 19.55 16 15 O -0.58 -23.03 13.08 -4.07 -0.05 -23.08 16 16 C -0.18 -5.15 5.86 -18.59 -0.11 -5.26 16 17 C -0.11 -2.75 9.58 24.59 0.24 -2.51 16 18 C 0.09 1.59 7.04 71.10 0.50 2.09 16 19 O -0.39 -8.56 10.83 -148.98 -1.61 -10.17 16 20 C 0.06 1.27 6.88 72.03 0.50 1.77 16 21 C -0.12 -2.82 5.29 29.80 0.16 -2.66 16 22 C -0.17 -4.63 5.36 -10.80 -0.06 -4.69 16 23 C -0.16 -4.17 10.18 30.62 0.31 -3.85 16 24 C -0.18 -5.00 9.73 30.61 0.30 -4.70 16 25 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.37 20.11 7.33 -92.71 -0.68 19.43 16 27 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.41 12.87 6.91 -92.71 -0.64 12.23 16 30 H 0.13 3.32 7.29 -2.91 -0.02 3.30 16 31 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.17 7.32 -2.38 -0.02 2.16 16 37 H 0.12 2.98 8.11 -2.38 -0.02 2.96 16 38 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 39 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.09 3.06 5.02 -2.39 -0.01 3.05 16 Total: -1.00 -67.46 335.16 0.88 -66.58 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.27 Total: 44.89 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.36 Total: -3.70 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -3.57 Total: -121.72 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.67 Total: -33.26 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.46 0.88 -66.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322985632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.635 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds