Wall clock time and date at job start Tue Mar 31 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48496 * 109.47034 * 270.00059 * 3 2 1 5 5 H 1.48496 * 109.46959 * 30.00300 * 3 2 1 6 6 H 1.48502 * 109.46963 * 149.99982 * 3 2 1 7 7 C 1.37884 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47213 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99868 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00046 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99974 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46790 * 179.97438 * 14 13 11 16 16 H 1.08996 * 110.88754 * 308.80804 * 15 14 13 17 17 C 1.54626 * 110.96937 * 72.62350 * 15 14 13 18 18 C 1.51280 * 104.19764 * 93.31803 * 17 15 14 19 19 O 1.21282 * 124.94031 * 196.21956 * 18 17 15 20 20 N 1.34415 * 110.11491 * 16.24959 * 18 17 15 21 21 C 1.46500 * 124.34994 * 180.38317 * 20 18 17 22 22 C 1.53003 * 117.49664 * 8.77650 * 21 20 18 23 23 C 1.53003 * 117.50236 * 300.11824 * 21 20 18 24 24 C 1.46756 * 111.30335 * 0.41378 * 20 18 17 25 25 H 0.96999 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47278 * 60.00133 * 9 7 2 27 27 H 1.08998 * 109.47377 * 300.00049 * 9 7 2 28 28 H 1.09003 * 109.46744 * 59.99985 * 10 9 7 29 29 H 1.08998 * 109.47135 * 300.00376 * 10 9 7 30 30 H 0.96998 * 119.99714 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47019 * 59.99755 * 14 13 11 32 32 H 1.08998 * 109.47227 * 299.99660 * 14 13 11 33 33 H 1.09006 * 110.48886 * 211.99653 * 17 15 14 34 34 H 1.09001 * 110.48509 * 334.64192 * 17 15 14 35 35 H 1.08997 * 115.55460 * 154.44249 * 21 20 18 36 36 H 1.08994 * 117.50162 * 359.97438 * 22 21 20 37 37 H 1.09002 * 117.49689 * 145.01958 * 22 21 20 38 38 H 1.09002 * 117.50136 * 214.97694 * 23 21 20 39 39 H 1.09007 * 117.49646 * 359.97438 * 23 21 20 40 40 H 1.09002 * 110.24543 * 223.98555 * 24 20 18 41 41 H 1.08993 * 110.25204 * 101.97957 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0003 13 7 2.1656 -6.1344 -0.0016 14 6 1.4330 -7.4031 -0.0016 15 6 2.4273 -8.5660 -0.0027 16 1 3.1644 -8.4464 -0.7967 17 6 3.1157 -8.7069 1.3747 18 6 2.2637 -9.7151 2.1139 19 8 2.2896 -9.9007 3.3121 20 7 1.4744 -10.3755 1.2493 21 6 0.5179 -11.4168 1.6329 22 6 0.2654 -11.6283 3.1270 23 6 1.0701 -12.6602 2.3329 24 6 1.6942 -9.9201 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6048 0.8877 29 1 2.8713 -3.6040 -0.8922 30 1 3.1356 -6.1344 -0.0027 31 1 0.8061 -7.4607 -0.8913 32 1 0.8067 -7.4610 0.8886 33 1 4.1328 -9.0807 1.2565 34 1 3.1179 -7.7516 1.8995 35 1 -0.3253 -11.5533 0.9558 36 1 0.8111 -10.9931 3.8246 37 1 -0.7439 -11.9043 3.4327 38 1 0.5901 -13.6146 2.1165 39 1 2.1452 -12.7037 2.5076 40 1 0.7401 -9.7864 -0.6382 41 1 2.3141 -10.6359 -0.6680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324691294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:10 Heat of formation + Delta-G solvation = -51.255228 kcal Electronic energy + Delta-G solvation = -21348.711840 eV Core-core repulsion = 18036.133515 eV Total energy + Delta-G solvation = -3312.578325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09823 -39.15327 -37.10236 -36.89695 -34.31169 -33.44643 -31.49394 -30.74447 -28.44433 -26.54986 -24.91597 -23.30136 -22.67647 -21.65681 -21.17352 -19.65895 -19.35269 -17.44342 -16.99635 -16.56245 -15.89886 -15.54962 -15.46541 -15.11657 -14.92049 -14.42084 -14.14846 -13.97963 -13.66938 -13.38090 -13.10806 -12.96252 -12.46815 -12.18750 -11.93635 -11.86003 -11.62561 -11.45850 -11.23454 -11.15642 -10.92633 -10.74298 -10.59531 -9.95986 -9.75978 -9.67265 -9.20038 -9.03588 -8.88605 -8.80577 -8.31880 -5.95924 -4.00385 2.25649 2.52576 3.23204 3.33472 3.37511 3.40564 3.43492 3.53529 3.97564 4.08792 4.28066 4.41988 4.47900 4.54338 4.66377 4.75889 5.00297 5.08036 5.11060 5.27522 5.29840 5.38078 5.39033 5.43362 5.52421 5.67887 5.70832 5.87795 5.96386 6.22007 6.23357 6.36779 6.64460 6.77639 6.88766 7.74340 7.83372 7.86241 7.88805 8.07304 8.38601 8.75237 9.08263 9.63175 11.15052 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.002660 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.180575 B =10522.440892 C =10546.595110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.533 6.533 13 N -0.745 5.745 14 C 0.127 3.873 15 C -0.113 4.113 16 H 0.108 0.892 17 C -0.154 4.154 18 C 0.520 3.480 19 O -0.526 6.526 20 N -0.593 5.593 21 C 0.079 3.921 22 C -0.190 4.190 23 C -0.191 4.191 24 C 0.113 3.887 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 -25.495 -1.086 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.400 5.400 14 C 0.003 3.997 15 C -0.132 4.132 16 H 0.126 0.874 17 C -0.194 4.194 18 C 0.308 3.692 19 O -0.403 6.403 20 N -0.326 5.326 21 C -0.024 4.024 22 C -0.227 4.227 23 C -0.230 4.230 24 C -0.010 4.010 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.157 -25.500 -0.443 26.020 hybrid contribution 0.872 0.791 -0.132 1.185 sum 6.029 -24.708 -0.575 25.440 Atomic orbital electron populations 1.69997 1.06066 1.26594 1.50190 1.25033 0.94829 0.99251 0.95315 0.86587 0.79777 0.83510 0.78046 1.20678 1.21227 1.19885 1.21223 0.92924 0.91013 1.51385 0.92593 1.18902 0.93194 0.89402 0.98619 1.21866 1.00719 0.91871 1.02510 1.21587 0.88663 0.85619 0.74323 1.90680 1.14519 1.87619 1.48009 1.46175 1.10020 1.05410 1.78380 1.21226 0.93732 0.82089 1.02672 1.22452 0.98376 0.94218 0.98123 0.87352 1.22502 1.00008 1.00840 0.96089 1.20947 0.80139 0.81588 0.86488 1.90620 1.67906 1.67912 1.13896 1.47643 1.39109 1.37567 1.08268 1.21538 0.94011 0.90199 0.96687 1.23763 1.02029 1.02692 0.94238 1.23358 1.00775 0.93914 1.04934 1.22088 1.01561 0.94551 0.82774 0.92943 0.95845 0.95829 0.90208 0.90188 0.76851 0.91082 0.91677 0.87373 0.87272 0.85255 0.85090 0.88417 0.88226 0.88830 0.89574 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 11 C 0.51 9.45 7.83 -10.99 -0.09 9.37 16 12 O -0.53 -12.42 15.98 5.55 0.09 -12.33 16 13 N -0.74 -9.35 5.34 -60.30 -0.32 -9.67 16 14 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 15 C -0.11 -0.74 3.16 -88.99 -0.28 -1.02 16 16 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 17 C -0.15 -1.23 6.36 -26.74 -0.17 -1.40 16 18 C 0.52 5.82 7.87 -10.86 -0.09 5.73 16 19 O -0.53 -7.81 14.69 5.56 0.08 -7.73 16 20 N -0.59 -5.31 3.27 -164.85 -0.54 -5.85 16 21 C 0.08 0.66 6.88 -67.93 -0.47 0.20 16 22 C -0.19 -1.82 9.77 -26.69 -0.26 -2.08 16 23 C -0.19 -1.54 10.34 -26.69 -0.28 -1.81 16 24 C 0.11 0.69 6.90 -3.12 -0.02 0.66 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 31 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.99 7.76 -51.93 -0.40 0.59 16 35 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.66 5.31 -51.93 -0.28 1.38 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.09 0.46 7.88 -51.93 -0.41 0.06 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -36.75 343.14 -8.62 -45.37 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.46 Total: -0.29 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -2.36 Total: -4.54 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.13 Total: -42.29 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.17 Total: -20.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.75 -8.62 -45.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324691294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.886 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds