Wall clock time and date at job start Tue Mar 31 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48496 * 109.47034 * 270.00059 * 3 2 1 5 5 H 1.48496 * 109.46959 * 30.00300 * 3 2 1 6 6 H 1.48502 * 109.46963 * 149.99982 * 3 2 1 7 7 C 1.37884 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47213 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99868 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00046 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99974 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46790 * 179.97438 * 14 13 11 16 16 H 1.08996 * 110.88754 * 308.80804 * 15 14 13 17 17 C 1.54626 * 110.96937 * 72.62350 * 15 14 13 18 18 C 1.51280 * 104.19764 * 93.31803 * 17 15 14 19 19 O 1.21282 * 124.94031 * 196.21956 * 18 17 15 20 20 N 1.34415 * 110.11491 * 16.24959 * 18 17 15 21 21 C 1.46500 * 124.34994 * 180.38317 * 20 18 17 22 22 C 1.53003 * 117.49664 * 8.77650 * 21 20 18 23 23 C 1.53003 * 117.50236 * 300.11824 * 21 20 18 24 24 C 1.46756 * 111.30335 * 0.41378 * 20 18 17 25 25 H 0.96999 * 120.00247 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47278 * 60.00133 * 9 7 2 27 27 H 1.08998 * 109.47377 * 300.00049 * 9 7 2 28 28 H 1.09003 * 109.46744 * 59.99985 * 10 9 7 29 29 H 1.08998 * 109.47135 * 300.00376 * 10 9 7 30 30 H 0.96998 * 119.99714 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47019 * 59.99755 * 14 13 11 32 32 H 1.08998 * 109.47227 * 299.99660 * 14 13 11 33 33 H 1.09006 * 110.48886 * 211.99653 * 17 15 14 34 34 H 1.09001 * 110.48509 * 334.64192 * 17 15 14 35 35 H 1.08997 * 115.55460 * 154.44249 * 21 20 18 36 36 H 1.08994 * 117.50162 * 359.97438 * 22 21 20 37 37 H 1.09002 * 117.49689 * 145.01958 * 22 21 20 38 38 H 1.09002 * 117.50136 * 214.97694 * 23 21 20 39 39 H 1.09007 * 117.49646 * 359.97438 * 23 21 20 40 40 H 1.09002 * 110.24543 * 223.98555 * 24 20 18 41 41 H 1.08993 * 110.25204 * 101.97957 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0003 13 7 2.1656 -6.1344 -0.0016 14 6 1.4330 -7.4031 -0.0016 15 6 2.4273 -8.5660 -0.0027 16 1 3.1644 -8.4464 -0.7967 17 6 3.1157 -8.7069 1.3747 18 6 2.2637 -9.7151 2.1139 19 8 2.2896 -9.9007 3.3121 20 7 1.4744 -10.3755 1.2493 21 6 0.5179 -11.4168 1.6329 22 6 0.2654 -11.6283 3.1270 23 6 1.0701 -12.6602 2.3329 24 6 1.6942 -9.9201 -0.1284 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6048 0.8877 29 1 2.8713 -3.6040 -0.8922 30 1 3.1356 -6.1344 -0.0027 31 1 0.8061 -7.4607 -0.8913 32 1 0.8067 -7.4610 0.8886 33 1 4.1328 -9.0807 1.2565 34 1 3.1179 -7.7516 1.8995 35 1 -0.3253 -11.5533 0.9558 36 1 0.8111 -10.9931 3.8246 37 1 -0.7439 -11.9043 3.4327 38 1 0.5901 -13.6146 2.1165 39 1 2.1452 -12.7037 2.5076 40 1 0.7401 -9.7864 -0.6382 41 1 2.3141 -10.6359 -0.6680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324691294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:10 Heat of formation + Delta-G solvation = -78.005801 kcal Electronic energy + Delta-G solvation = -21349.871832 eV Core-core repulsion = 18036.133515 eV Total energy + Delta-G solvation = -3313.738316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.83985 -40.56930 -37.96634 -37.66492 -35.61814 -35.36834 -33.08136 -31.96604 -29.23718 -28.01381 -26.30700 -23.99249 -23.52310 -23.30925 -21.96075 -21.04833 -20.16027 -18.80341 -18.10654 -17.62584 -17.29917 -16.71484 -16.57460 -16.42861 -16.18501 -15.65302 -15.22151 -14.82160 -14.77190 -14.26956 -14.21151 -14.05784 -13.95840 -13.71547 -13.21406 -12.85012 -12.74050 -12.57373 -12.46876 -12.36502 -12.17487 -11.89165 -11.86044 -11.61546 -11.39700 -11.29299 -10.72119 -10.58773 -10.56120 -10.05919 -9.53217 -8.17242 -6.31179 1.42808 1.45481 1.45647 1.56485 1.74883 1.89702 2.26571 2.45780 2.86467 3.15876 3.33549 3.41949 3.63430 3.76490 3.92043 3.98459 4.11229 4.17342 4.37825 4.51574 4.53478 4.59447 4.62828 4.67807 4.73763 4.75002 4.78952 4.90761 4.99513 5.09983 5.14918 5.24510 5.47496 5.54066 5.65335 5.67546 5.87116 6.08849 6.18865 6.65285 6.88040 7.10762 7.38257 7.40254 8.95510 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.002660 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.180575 B =10522.440892 C =10546.595110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.592 6.592 13 N -0.715 5.715 14 C 0.125 3.875 15 C -0.094 4.094 16 H 0.149 0.851 17 C -0.149 4.149 18 C 0.501 3.499 19 O -0.577 6.577 20 N -0.595 5.595 21 C 0.076 3.924 22 C -0.214 4.214 23 C -0.176 4.176 24 C 0.111 3.889 25 H 0.262 0.738 26 H -0.017 1.017 27 H -0.022 1.022 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.419 0.581 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -26.518 -2.922 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.369 5.369 14 C 0.002 3.998 15 C -0.113 4.113 16 H 0.167 0.833 17 C -0.189 4.189 18 C 0.291 3.709 19 O -0.458 6.458 20 N -0.326 5.326 21 C -0.027 4.027 22 C -0.251 4.251 23 C -0.215 4.215 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.001 0.999 27 H -0.003 1.003 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.257 0.743 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.174 0.826 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.976 -26.576 -2.316 27.844 hybrid contribution -0.026 1.033 0.458 1.131 sum 7.951 -25.543 -1.858 26.816 Atomic orbital electron populations 1.70181 1.08356 1.27776 1.51614 1.26161 0.95721 1.04024 0.94720 0.85317 0.78647 0.77695 0.78563 1.19561 1.21376 1.17886 1.21739 0.94055 0.91602 1.50565 0.90452 1.18701 0.93804 0.92660 0.94581 1.21634 0.99244 0.90056 1.04992 1.21334 0.87764 0.86950 0.74146 1.90666 1.16927 1.88468 1.51161 1.45815 1.11083 1.04438 1.75614 1.21359 0.94698 0.82457 1.01336 1.22420 0.97826 0.92527 0.98486 0.83293 1.22532 1.01042 0.99285 0.96032 1.21629 0.80742 0.82285 0.86258 1.90604 1.69550 1.69544 1.16079 1.47866 1.38289 1.37092 1.09327 1.21862 0.94683 0.90086 0.96082 1.23671 1.02687 1.03864 0.94877 1.23348 0.99799 0.94695 1.03621 1.22364 1.02793 0.94622 0.81292 0.92904 0.99874 1.00314 0.87912 0.87262 0.74282 0.90982 0.94643 0.84460 0.88606 0.82602 0.88588 0.87091 0.85661 0.90374 0.88563 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.95 13.29 21.45 0.28 -59.66 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.06 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.23 4.26 29.85 0.13 2.36 16 10 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 11 C 0.51 18.81 7.83 87.66 0.69 19.50 16 12 O -0.59 -28.72 15.98 -3.05 -0.05 -28.77 16 13 N -0.72 -16.48 5.34 -463.06 -2.47 -18.95 16 14 C 0.13 2.47 4.96 86.38 0.43 2.90 16 15 C -0.09 -0.89 3.16 -9.73 -0.03 -0.92 16 16 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 17 C -0.15 -2.03 6.36 30.59 0.19 -1.83 16 18 C 0.50 11.02 7.87 87.90 0.69 11.72 16 19 O -0.58 -18.04 14.69 -3.03 -0.04 -18.08 16 20 N -0.59 -9.70 3.27 -794.05 -2.60 -12.30 16 21 C 0.08 1.18 6.88 44.99 0.31 1.48 16 22 C -0.21 -4.20 9.77 30.62 0.30 -3.90 16 23 C -0.18 -2.64 10.34 30.62 0.32 -2.33 16 24 C 0.11 0.94 6.90 86.84 0.60 1.53 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 26 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 27 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 28 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.42 6.15 8.47 -92.71 -0.79 5.36 16 31 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 33 H 0.14 1.09 8.14 -2.38 -0.02 1.08 16 34 H 0.10 1.60 7.76 -2.39 -0.02 1.58 16 35 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 2.67 5.31 -2.39 -0.01 2.65 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.10 0.69 7.88 -2.39 -0.02 0.67 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -87.60 343.14 1.87 -85.73 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.24 Total: 10.24 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 4.49 Total: -4.49 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -4.79 Total: -90.91 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.86 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -87.60 1.87 -85.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324691294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -87.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds