Wall clock time and date at job start Tue Mar 31 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47364 * 269.99901 * 3 2 1 5 5 H 1.48493 * 109.47040 * 30.00057 * 3 2 1 6 6 H 1.48503 * 109.47331 * 149.99908 * 3 2 1 7 7 C 1.37879 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00228 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88582 * 303.88794 * 9 7 2 11 11 C 1.55153 * 111.00867 * 180.02562 * 9 7 2 12 12 C 1.54325 * 102.94361 * 206.38666 * 11 9 7 13 13 N 1.47022 * 107.27030 * 22.18973 * 12 11 9 14 14 C 1.34775 * 125.64539 * 181.01769 * 13 12 11 15 15 O 1.21589 * 119.99889 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00432 * 0.03557 * 14 13 12 17 17 C 1.46496 * 120.00006 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47106 * 179.97438 * 17 16 14 19 19 C 1.31001 * 119.99729 * 124.99600 * 18 17 16 20 20 C 1.50696 * 119.99729 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.50026 * 188.74793 * 20 19 18 22 22 C 1.53005 * 117.49846 * 120.09097 * 20 19 18 23 23 C 1.47419 * 108.70349 * 1.28698 * 13 12 11 24 24 H 0.97001 * 119.99925 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00548 * 56.11581 * 10 9 7 26 26 H 1.09004 * 110.72258 * 88.02371 * 11 9 7 27 27 H 1.08999 * 110.87463 * 324.82198 * 11 9 7 28 28 H 1.08998 * 109.88442 * 262.77654 * 12 11 9 29 29 H 1.09001 * 109.88018 * 141.60938 * 12 11 9 30 30 H 0.96998 * 119.99803 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47001 * 59.99676 * 17 16 14 32 32 H 1.09000 * 109.47574 * 299.99892 * 17 16 14 33 33 H 1.07997 * 120.00069 * 305.00392 * 18 17 16 34 34 H 1.07997 * 120.00202 * 0.02562 * 19 18 17 35 35 H 1.08997 * 115.55379 * 334.42461 * 20 19 18 36 36 H 1.09000 * 117.49538 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49718 * 145.02131 * 21 20 19 38 38 H 1.08995 * 117.50174 * 214.98352 * 22 20 19 39 39 H 1.09003 * 117.49678 * 359.97438 * 22 20 19 40 40 H 1.09009 * 110.36512 * 94.47968 * 23 13 12 41 41 H 1.08999 * 110.36802 * 216.80098 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2273 -3.7051 -0.0005 12 6 1.3976 -4.8215 -0.6690 13 7 0.3462 -4.1684 -1.4624 14 6 -0.6004 -4.8008 -2.1839 15 8 -1.4234 -4.1562 -2.8047 16 7 -0.6350 -6.1477 -2.2170 17 6 -1.6643 -6.8350 -3.0007 18 6 -1.4825 -8.3254 -2.8714 19 6 -2.4775 -9.0736 -2.4634 20 6 -2.2959 -10.5640 -2.3347 21 6 -3.5422 -11.4059 -2.0535 22 6 -2.5034 -11.1841 -0.9514 23 6 0.5028 -2.7074 -1.3434 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2775 -1.8357 1.1505 26 1 2.4973 -3.9827 1.0184 27 1 3.1187 -3.4831 -0.5873 28 1 0.9462 -5.4554 0.0942 29 1 2.0362 -5.4188 -1.3198 30 1 0.0217 -6.6620 -1.7219 31 1 -1.5752 -6.5480 -4.0485 32 1 -2.6505 -6.5554 -2.6301 33 1 -0.5321 -8.7767 -3.1150 34 1 -3.4280 -8.6224 -2.2201 35 1 -1.5268 -11.0008 -2.9717 36 1 -4.4935 -10.8817 -1.9621 37 1 -3.5928 -12.3966 -2.5054 38 1 -1.8710 -12.0289 -0.6785 39 1 -2.7708 -10.5139 -0.1344 40 1 1.0939 -2.3204 -2.1736 41 1 -0.4729 -2.2225 -1.3128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326766928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:37 Heat of formation + Delta-G solvation = -38.162089 kcal Electronic energy + Delta-G solvation = -21638.115226 eV Core-core repulsion = 18326.104663 eV Total energy + Delta-G solvation = -3312.010563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.61078 -38.05283 -37.34788 -35.16239 -34.21310 -32.29139 -32.12248 -30.00111 -27.85605 -26.53242 -24.68047 -22.68972 -22.56326 -21.60565 -20.13819 -19.61415 -19.23417 -17.56409 -17.05111 -16.17961 -15.69366 -15.23755 -15.03542 -14.92363 -14.36421 -14.05815 -13.82126 -13.14902 -13.00992 -12.85918 -12.75794 -12.17711 -12.05087 -11.88670 -11.60321 -11.51067 -11.40832 -11.16167 -11.02946 -10.76484 -10.64013 -10.56416 -10.48101 -10.15867 -9.66316 -9.38130 -9.15498 -8.73780 -8.66007 -8.33490 -7.63967 -6.27025 -4.36577 1.78101 3.21051 3.27858 3.29812 3.32929 3.66945 3.78959 4.26303 4.28655 4.57893 4.60573 4.70163 4.85074 4.98020 5.00196 5.22194 5.32251 5.44231 5.54645 5.62666 5.68404 5.72814 5.79253 5.84949 5.87167 6.06052 6.14590 6.40759 6.50082 6.53744 6.73413 6.82734 6.90119 7.00008 7.26029 7.35464 7.67847 7.76695 8.02936 8.57256 8.67906 9.17223 9.33191 9.49060 10.80232 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.003075 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.480888 B = 9103.720238 C = 9334.389655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.106 3.894 13 N -0.627 5.627 14 C 0.715 3.285 15 O -0.599 6.599 16 N -0.749 5.749 17 C 0.171 3.829 18 C -0.166 4.166 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.177 4.177 22 C -0.172 4.172 23 C 0.111 3.889 24 H 0.271 0.729 25 H 0.386 0.614 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.394 0.606 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -18.607 -3.064 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.417 3.583 15 O -0.478 6.478 16 N -0.406 5.406 17 C 0.047 3.953 18 C -0.184 4.184 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.214 4.214 22 C -0.208 4.208 23 C -0.011 4.011 24 H 0.081 0.919 25 H 0.238 0.762 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.227 0.773 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.264 -18.557 -3.449 19.010 hybrid contribution 0.436 1.080 0.002 1.165 sum -1.828 -17.477 -3.447 17.907 Atomic orbital electron populations 1.69571 1.06025 1.27980 1.49756 1.25091 0.95040 0.99806 0.93358 0.86383 0.79751 0.82370 0.78276 1.20410 1.20993 1.19701 1.21498 0.93681 0.90103 1.52296 0.91479 1.19628 0.85760 0.91590 0.82195 1.86056 1.51093 1.53009 1.49265 1.22597 0.97827 0.94901 1.00117 1.21919 0.89619 0.96431 0.93791 1.47889 1.29896 1.09360 1.49244 1.15533 0.81432 0.81196 0.80111 1.90881 1.41859 1.65451 1.49576 1.45090 1.35483 1.04990 1.55062 1.20065 0.91556 0.87599 0.96127 1.22846 0.99423 0.94795 1.01356 1.22293 0.99042 0.92917 0.98705 1.21240 1.00989 0.92292 1.00186 1.22993 0.93954 1.01129 1.03284 1.22981 1.02873 1.02925 0.92068 1.23199 1.02325 0.75508 1.00057 0.91871 0.76183 0.90795 0.90504 0.92661 0.93206 0.77267 0.91061 0.91577 0.86755 0.86823 0.87348 0.88542 0.88659 0.88549 0.88450 0.92486 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.05 10.72 55.43 0.59 -23.46 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.98 8.25 -34.44 -0.28 -14.27 16 8 H 0.07 1.70 7.77 -52.48 -0.41 1.29 16 9 C 0.25 6.08 0.89 -89.51 -0.08 6.00 16 10 O -0.58 -15.18 13.19 -35.23 -0.46 -15.64 16 11 C -0.12 -2.31 6.12 -24.90 -0.15 -2.46 16 12 C 0.11 1.87 6.15 -3.06 -0.02 1.85 16 13 N -0.63 -13.30 3.32 -176.10 -0.59 -13.89 16 14 C 0.72 15.01 8.49 -86.92 -0.74 14.27 16 15 O -0.60 -14.90 16.60 5.29 0.09 -14.82 16 16 N -0.75 -11.71 5.51 -66.41 -0.37 -12.08 16 17 C 0.17 2.27 6.11 -5.19 -0.03 2.24 16 18 C -0.17 -1.66 9.27 -36.02 -0.33 -1.99 16 19 C -0.11 -1.03 9.27 -36.03 -0.33 -1.36 16 20 C -0.13 -1.02 5.99 -91.77 -0.55 -1.57 16 21 C -0.18 -1.23 10.24 -26.69 -0.27 -1.50 16 22 C -0.17 -1.26 10.24 -26.69 -0.27 -1.53 16 23 C 0.11 2.73 5.65 -2.41 -0.01 2.72 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.39 10.42 6.93 45.56 0.32 10.73 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 5.21 7.45 -40.82 -0.30 4.90 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 33 H 0.11 1.01 8.05 -52.49 -0.42 0.59 16 34 H 0.11 1.05 7.84 -52.49 -0.41 0.64 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.43 8.04 -51.92 -0.42 1.01 16 41 H 0.08 2.24 7.64 -51.93 -0.40 1.85 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -30.39 343.26 -9.56 -39.95 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.80 Total: 15.27 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.18 Total: 4.13 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.36 Total: -49.43 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.38 Total: -30.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.39 -9.56 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.789 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds