Wall clock time and date at job start Tue Mar 31 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47364 * 269.99901 * 3 2 1 5 5 H 1.48493 * 109.47040 * 30.00057 * 3 2 1 6 6 H 1.48503 * 109.47331 * 149.99908 * 3 2 1 7 7 C 1.37879 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00228 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88582 * 303.88794 * 9 7 2 11 11 C 1.55153 * 111.00867 * 180.02562 * 9 7 2 12 12 C 1.54325 * 102.94361 * 206.38666 * 11 9 7 13 13 N 1.47022 * 107.27030 * 22.18973 * 12 11 9 14 14 C 1.34775 * 125.64539 * 181.01769 * 13 12 11 15 15 O 1.21589 * 119.99889 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00432 * 0.03557 * 14 13 12 17 17 C 1.46496 * 120.00006 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47106 * 179.97438 * 17 16 14 19 19 C 1.31001 * 119.99729 * 124.99600 * 18 17 16 20 20 C 1.50696 * 119.99729 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.50026 * 188.74793 * 20 19 18 22 22 C 1.53005 * 117.49846 * 120.09097 * 20 19 18 23 23 C 1.47419 * 108.70349 * 1.28698 * 13 12 11 24 24 H 0.97001 * 119.99925 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00548 * 56.11581 * 10 9 7 26 26 H 1.09004 * 110.72258 * 88.02371 * 11 9 7 27 27 H 1.08999 * 110.87463 * 324.82198 * 11 9 7 28 28 H 1.08998 * 109.88442 * 262.77654 * 12 11 9 29 29 H 1.09001 * 109.88018 * 141.60938 * 12 11 9 30 30 H 0.96998 * 119.99803 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47001 * 59.99676 * 17 16 14 32 32 H 1.09000 * 109.47574 * 299.99892 * 17 16 14 33 33 H 1.07997 * 120.00069 * 305.00392 * 18 17 16 34 34 H 1.07997 * 120.00202 * 0.02562 * 19 18 17 35 35 H 1.08997 * 115.55379 * 334.42461 * 20 19 18 36 36 H 1.09000 * 117.49538 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49718 * 145.02131 * 21 20 19 38 38 H 1.08995 * 117.50174 * 214.98352 * 22 20 19 39 39 H 1.09003 * 117.49678 * 359.97438 * 22 20 19 40 40 H 1.09009 * 110.36512 * 94.47968 * 23 13 12 41 41 H 1.08999 * 110.36802 * 216.80098 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3520 -2.5684 1.1081 11 6 2.2273 -3.7051 -0.0005 12 6 1.3976 -4.8215 -0.6690 13 7 0.3462 -4.1684 -1.4624 14 6 -0.6004 -4.8008 -2.1839 15 8 -1.4234 -4.1562 -2.8047 16 7 -0.6350 -6.1477 -2.2170 17 6 -1.6643 -6.8350 -3.0007 18 6 -1.4825 -8.3254 -2.8714 19 6 -2.4775 -9.0736 -2.4634 20 6 -2.2959 -10.5640 -2.3347 21 6 -3.5422 -11.4059 -2.0535 22 6 -2.5034 -11.1841 -0.9514 23 6 0.5028 -2.7074 -1.3434 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2775 -1.8357 1.1505 26 1 2.4973 -3.9827 1.0184 27 1 3.1187 -3.4831 -0.5873 28 1 0.9462 -5.4554 0.0942 29 1 2.0362 -5.4188 -1.3198 30 1 0.0217 -6.6620 -1.7219 31 1 -1.5752 -6.5480 -4.0485 32 1 -2.6505 -6.5554 -2.6301 33 1 -0.5321 -8.7767 -3.1150 34 1 -3.4280 -8.6224 -2.2201 35 1 -1.5268 -11.0008 -2.9717 36 1 -4.4935 -10.8817 -1.9621 37 1 -3.5928 -12.3966 -2.5054 38 1 -1.8710 -12.0289 -0.6785 39 1 -2.7708 -10.5139 -0.1344 40 1 1.0939 -2.3204 -2.1736 41 1 -0.4729 -2.2225 -1.3128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326766928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:36 Heat of formation + Delta-G solvation = -58.882166 kcal Electronic energy + Delta-G solvation = -21639.013716 eV Core-core repulsion = 18326.104663 eV Total energy + Delta-G solvation = -3312.909053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24025 -39.20788 -38.57491 -36.38042 -36.06608 -34.14616 -33.42394 -31.64134 -29.60256 -27.87681 -26.38009 -24.12664 -23.21766 -22.44594 -21.44332 -21.23660 -20.43642 -19.27994 -18.82625 -17.36150 -17.04809 -16.89916 -16.43942 -16.25588 -15.86395 -15.40122 -15.13880 -14.74777 -14.60448 -14.31099 -13.92303 -13.62557 -13.49060 -13.30025 -13.04178 -12.83476 -12.50366 -12.42204 -12.31217 -12.21020 -12.19379 -12.08973 -11.87555 -11.40212 -11.22749 -11.18924 -10.64540 -10.35186 -10.28096 -9.79297 -9.31144 -8.24946 -6.42013 0.95423 1.43098 1.44877 1.54967 1.84670 2.14112 2.38973 3.01196 3.04832 3.19868 3.57794 3.81679 4.04027 4.06115 4.11805 4.16233 4.19175 4.27012 4.35511 4.43221 4.61359 4.64092 4.76360 4.76768 4.81704 5.04803 5.05530 5.10475 5.24459 5.27561 5.31035 5.39121 5.44026 5.46014 5.64868 5.77516 5.78475 6.03283 6.18842 6.65509 7.06670 7.30727 7.39786 7.56238 8.80766 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.003075 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.480888 B = 9103.720238 C = 9334.389655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.232 3.768 10 O -0.590 6.590 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.708 3.292 15 O -0.647 6.647 16 N -0.727 5.727 17 C 0.170 3.830 18 C -0.168 4.168 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.174 4.174 22 C -0.172 4.172 23 C 0.124 3.876 24 H 0.270 0.730 25 H 0.377 0.623 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -20.871 -2.906 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.191 3.809 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.410 3.590 15 O -0.530 6.530 16 N -0.384 5.384 17 C 0.046 3.954 18 C -0.186 4.186 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.211 4.211 22 C -0.209 4.209 23 C 0.000 4.000 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.726 -20.899 -3.272 21.166 hybrid contribution -0.098 1.727 -0.046 1.731 sum -0.824 -19.171 -3.317 19.474 Atomic orbital electron populations 1.69693 1.07305 1.28507 1.50415 1.25877 0.95754 1.03035 0.93092 0.85412 0.78736 0.78463 0.78157 1.20282 1.20996 1.18769 1.21846 0.94095 0.91153 1.52167 0.90984 1.19897 0.86233 0.93360 0.81391 1.86046 1.51214 1.52548 1.50111 1.22604 0.97428 0.93341 1.01473 1.22123 0.88966 0.95886 0.94494 1.47840 1.31012 1.08216 1.49840 1.15791 0.80853 0.82661 0.79741 1.90841 1.43673 1.66960 1.51535 1.44940 1.35892 1.02992 1.54526 1.20158 0.90226 0.89700 0.95269 1.22634 1.00673 0.92363 1.02961 1.22439 0.98576 0.93964 0.97058 1.21285 1.02083 0.91233 1.01023 1.23089 0.93561 1.01564 1.02870 1.23045 1.03168 1.03085 0.91574 1.22766 0.99608 0.77635 0.99992 0.92033 0.77272 0.89643 0.89099 0.91028 0.89017 0.75393 0.91740 0.92939 0.84833 0.87296 0.86226 0.88693 0.87287 0.87259 0.89118 0.93848 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.93 10.72 21.45 0.23 -50.70 16 2 C 0.02 1.20 5.30 84.66 0.45 1.65 16 3 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -28.89 8.25 25.60 0.21 -28.68 16 8 H 0.07 3.59 7.77 -2.91 -0.02 3.57 16 9 C 0.23 11.34 0.89 -10.07 -0.01 11.33 16 10 O -0.59 -31.10 13.19 -148.98 -1.97 -33.06 16 11 C -0.11 -4.15 6.12 31.78 0.19 -3.96 16 12 C 0.11 3.49 6.15 86.73 0.53 4.02 16 13 N -0.63 -26.58 3.32 -829.32 -2.76 -29.34 16 14 C 0.71 29.72 8.49 179.05 1.52 31.24 16 15 O -0.65 -33.31 16.60 -4.00 -0.07 -33.37 16 16 N -0.73 -21.74 5.51 -482.30 -2.66 -24.40 16 17 C 0.17 4.40 6.11 85.64 0.52 4.92 16 18 C -0.17 -3.02 9.27 25.65 0.24 -2.78 16 19 C -0.10 -1.70 9.27 25.64 0.24 -1.46 16 20 C -0.14 -1.84 5.99 -11.54 -0.07 -1.91 16 21 C -0.17 -2.02 10.24 30.62 0.31 -1.71 16 22 C -0.17 -2.11 10.24 30.62 0.31 -1.79 16 23 C 0.12 6.25 5.65 86.93 0.49 6.74 16 24 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.38 21.08 6.93 -74.06 -0.51 20.57 16 26 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 27 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.41 9.66 7.45 -92.71 -0.69 8.97 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 33 H 0.13 1.93 8.05 -2.91 -0.02 1.91 16 34 H 0.11 1.91 7.84 -2.91 -0.02 1.88 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 2.25 8.04 -2.38 -0.02 2.23 16 41 H 0.04 2.15 7.64 -2.39 -0.02 2.13 16 Total: -1.00 -67.66 343.26 -0.42 -68.08 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.17 Total: 41.20 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 4.95 Total: 17.61 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.18 Total: -104.43 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -2.03 Total: -66.44 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.66 -0.42 -68.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.198 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds