Wall clock time and date at job start Tue Mar 31 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00087 * 2 1 4 4 H 1.48499 * 109.47302 * 274.96841 * 3 2 1 5 5 H 1.48496 * 109.47333 * 34.97101 * 3 2 1 6 6 H 1.48508 * 109.47010 * 154.97057 * 3 2 1 7 7 C 1.37882 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99576 * 174.29605 * 7 2 1 9 9 C 1.50699 * 120.00236 * 354.57040 * 7 2 1 10 10 O 1.42906 * 110.64008 * 298.35578 * 9 7 2 11 11 C 1.55150 * 110.71990 * 175.21657 * 9 7 2 12 12 C 1.54910 * 101.58033 * 206.13199 * 11 9 7 13 13 N 1.47427 * 104.83242 * 37.01236 * 12 11 9 14 14 C 1.34770 * 125.65011 * 155.90926 * 13 12 11 15 15 O 1.21596 * 119.99799 * 179.97438 * 14 13 12 16 16 N 1.34773 * 120.00202 * 359.97315 * 14 13 12 17 17 C 1.46507 * 120.00036 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46921 * 179.97438 * 17 16 14 19 19 C 1.31003 * 119.99966 * 124.14910 * 18 17 16 20 20 C 1.50701 * 119.99701 * 354.09988 * 19 18 17 21 21 C 1.53001 * 117.49852 * 180.90787 * 20 19 18 22 22 C 1.52994 * 60.00208 * 252.51350 * 21 20 19 23 23 C 1.47326 * 108.72980 * 335.71158 * 13 12 11 24 24 H 0.96997 * 119.99817 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99808 * 59.29732 * 10 9 7 26 26 H 1.09001 * 111.00450 * 324.20961 * 11 9 7 27 27 H 1.09000 * 111.00804 * 88.05623 * 11 9 7 28 28 H 1.09005 * 110.36832 * 155.84260 * 12 11 9 29 29 H 1.08999 * 110.37230 * 278.16816 * 12 11 9 30 30 H 0.97001 * 120.00304 * 359.97438 * 16 14 13 31 31 H 1.08994 * 109.46920 * 299.99451 * 17 16 14 32 32 H 1.08993 * 109.47078 * 60.00302 * 17 16 14 33 33 H 1.07999 * 120.00411 * 304.15122 * 18 17 16 34 34 H 1.08001 * 120.00462 * 174.10666 * 19 18 17 35 35 H 1.08996 * 115.55747 * 326.62376 * 20 19 18 36 36 H 1.08995 * 117.49798 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49766 * 145.02158 * 21 20 19 38 38 H 1.09003 * 117.50249 * 252.50558 * 22 21 20 39 39 H 1.09003 * 117.49999 * 107.49170 * 22 21 20 40 40 H 1.09003 * 110.06096 * 241.87052 * 23 13 12 41 41 H 1.09003 * 109.84316 * 120.61843 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3917 2.1070 -1.3948 5 1 1.5032 2.6200 0.8024 6 1 3.5954 1.4120 0.5924 7 6 2.0045 -1.1942 -0.0005 8 1 3.0804 -1.1965 -0.0935 9 6 1.2560 -2.4963 0.1224 10 8 0.5534 -2.5582 1.3653 11 6 2.2230 -3.7010 -0.0221 12 6 1.2693 -4.8043 -0.5447 13 7 0.3408 -4.1029 -1.4499 14 6 -0.3474 -4.6682 -2.4613 15 8 -1.0887 -3.9898 -3.1461 16 7 -0.2140 -5.9853 -2.7139 17 6 -0.9617 -6.5997 -3.8138 18 6 -0.6365 -8.0695 -3.8829 19 6 -1.5985 -8.9567 -3.8239 20 6 -3.0142 -8.5162 -3.5539 21 6 -4.0893 -9.6020 -3.4759 22 6 -4.0302 -8.6696 -4.6875 23 6 0.2857 -2.6823 -1.0631 24 1 -0.4850 0.8400 0.0004 25 1 -0.0912 -1.8479 1.4884 26 1 3.0079 -3.4872 -0.7475 27 1 2.6493 -3.9777 0.9422 28 1 1.8301 -5.5632 -1.0904 29 1 0.7231 -5.2569 0.2828 30 1 0.3777 -6.5264 -2.1679 31 1 -2.0304 -6.4714 -3.6428 32 1 -0.6840 -6.1220 -4.7533 33 1 0.3897 -8.3916 -3.9810 34 1 -1.3772 -10.0039 -3.9686 35 1 -3.1209 -7.6538 -2.8959 36 1 -3.7726 -10.6350 -3.6195 37 1 -4.9034 -9.4542 -2.7663 38 1 -4.8054 -7.9084 -4.7752 39 1 -3.6747 -9.0892 -5.6286 40 1 -0.7267 -2.4167 -0.7588 41 1 0.5992 -2.0585 -1.9002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326766929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:38 Heat of formation + Delta-G solvation = -54.583244 kcal Electronic energy + Delta-G solvation = -21894.734974 eV Core-core repulsion = 18582.012335 eV Total energy + Delta-G solvation = -3312.722638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25845 -39.33850 -38.70660 -36.21022 -36.07182 -34.24703 -33.37320 -31.57210 -29.57850 -27.74503 -26.23457 -24.13505 -23.59524 -23.21237 -21.45911 -21.06405 -19.89255 -19.12338 -18.64299 -17.48245 -17.21956 -16.80438 -16.46069 -16.30335 -16.00924 -15.26420 -15.02183 -14.77379 -14.63607 -14.50310 -13.99656 -13.63607 -13.55748 -13.41079 -13.09590 -12.84411 -12.52938 -12.40189 -12.32004 -12.28294 -12.10572 -12.04981 -11.66518 -11.36295 -11.22650 -11.12575 -10.69312 -10.30642 -10.28196 -9.82459 -9.37319 -8.25667 -6.42009 0.99351 1.41115 1.43456 1.53979 1.83672 2.13655 2.38365 3.00357 3.00919 3.17628 3.66623 3.79729 3.97024 4.00455 4.07156 4.13210 4.18662 4.34558 4.37676 4.39156 4.59438 4.65153 4.74220 4.78378 4.92030 5.01239 5.07678 5.14017 5.24217 5.25424 5.26977 5.37754 5.45367 5.51003 5.58009 5.74411 5.84267 6.03364 6.19419 6.65093 7.07043 7.26037 7.32816 7.56484 8.79798 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.003367 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.837086 B = 8313.136732 C = 8534.550213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.585 6.585 11 C -0.109 4.109 12 C 0.107 3.893 13 N -0.637 5.637 14 C 0.707 3.293 15 O -0.647 6.647 16 N -0.726 5.726 17 C 0.162 3.838 18 C -0.174 4.174 19 C -0.092 4.092 20 C -0.158 4.158 21 C -0.163 4.163 22 C -0.174 4.174 23 C 0.145 3.855 24 H 0.269 0.731 25 H 0.373 0.627 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -19.725 -5.404 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.392 6.392 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.374 5.374 14 C 0.409 3.591 15 O -0.530 6.530 16 N -0.383 5.383 17 C 0.039 3.961 18 C -0.192 4.192 19 C -0.110 4.110 20 C -0.176 4.176 21 C -0.200 4.200 22 C -0.211 4.211 23 C 0.021 3.979 24 H 0.078 0.922 25 H 0.222 0.778 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.246 0.754 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.045 0.955 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.278 -19.700 -5.879 20.598 hybrid contribution -0.155 1.866 0.077 1.874 sum -1.434 -17.834 -5.802 18.809 Atomic orbital electron populations 1.69904 1.07141 1.28387 1.49937 1.25849 0.95783 1.02925 0.93154 0.85450 0.78972 0.78781 0.77868 1.20676 1.20642 1.18794 1.21837 0.94343 0.91436 1.51966 0.91373 1.19724 0.87676 0.93713 0.79739 1.86105 1.58223 1.54765 1.40151 1.22714 0.96715 0.93341 1.01955 1.22408 0.90709 0.95441 0.92880 1.48015 1.46328 1.11140 1.31904 1.15817 0.80305 0.82784 0.80222 1.90845 1.44853 1.63822 1.53488 1.45000 1.50454 1.06020 1.36844 1.20371 0.95660 0.91374 0.88682 1.22773 1.00748 0.91805 1.03917 1.22486 0.91761 0.99829 0.96961 1.21368 0.90685 1.01681 1.03853 1.23066 1.00208 0.96167 1.00574 1.23027 1.00928 1.03178 0.93919 1.22376 0.99256 0.78207 0.98032 0.92175 0.77824 0.89828 0.88962 0.87964 0.91138 0.75363 0.92267 0.92284 0.84122 0.83934 0.89024 0.86930 0.88511 0.89014 0.87563 0.95490 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 10.98 21.45 0.24 -50.56 16 2 C 0.02 1.27 5.25 84.66 0.44 1.71 16 3 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -29.47 8.11 25.60 0.21 -29.26 16 8 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 9 C 0.23 11.33 0.85 -10.36 -0.01 11.32 16 10 O -0.59 -29.56 13.08 -148.98 -1.95 -31.51 16 11 C -0.11 -4.14 6.23 31.98 0.20 -3.94 16 12 C 0.11 3.51 6.57 86.86 0.57 4.08 16 13 N -0.64 -26.93 3.33 -828.98 -2.76 -29.70 16 14 C 0.71 29.69 8.49 179.06 1.52 31.21 16 15 O -0.65 -33.48 16.67 -4.02 -0.07 -33.54 16 16 N -0.73 -21.50 5.51 -482.30 -2.66 -24.16 16 17 C 0.16 4.22 5.91 85.63 0.51 4.72 16 18 C -0.17 -2.96 9.63 25.64 0.25 -2.72 16 19 C -0.09 -1.38 9.66 25.64 0.25 -1.13 16 20 C -0.16 -2.83 4.90 -11.54 -0.06 -2.88 16 21 C -0.16 -2.26 10.23 30.59 0.31 -1.95 16 22 C -0.17 -2.73 10.23 30.59 0.31 -2.42 16 23 C 0.15 7.48 5.15 86.67 0.45 7.92 16 24 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.37 19.72 7.62 -74.05 -0.56 19.15 16 26 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 27 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.10 2.42 7.30 -2.38 -0.02 2.40 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.41 9.37 6.94 -92.71 -0.64 8.72 16 31 H 0.06 1.72 5.53 -2.39 -0.01 1.71 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.09 2.09 6.73 -2.39 -0.02 2.07 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.55 7.87 -2.39 -0.02 1.53 16 41 H 0.03 1.60 7.81 -2.39 -0.02 1.58 16 Total: -1.00 -68.79 338.71 -0.39 -69.18 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.17 Total: 39.13 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 4.95 Total: 16.66 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -5.18 Total: -104.41 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -2.02 Total: -65.05 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -68.79 -0.39 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.596 kcal (2) G-P(sol) polarization free energy of solvation -68.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds