Wall clock time and date at job start Tue Mar 31 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47050 * 265.38397 * 3 2 1 5 5 H 1.48504 * 109.47056 * 25.38154 * 3 2 1 6 6 H 1.48492 * 109.46994 * 145.38124 * 3 2 1 7 7 C 1.37881 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99799 * 352.78115 * 7 2 1 9 9 C 1.50689 * 120.00026 * 172.78254 * 7 2 1 10 10 O 1.42900 * 110.88971 * 328.58242 * 9 7 2 11 11 C 1.55156 * 111.03956 * 92.48525 * 9 7 2 12 12 C 1.54333 * 103.02247 * 153.39374 * 11 9 7 13 13 N 1.47016 * 107.26591 * 338.14438 * 12 11 9 14 14 C 1.34781 * 125.64947 * 178.85538 * 13 12 11 15 15 O 1.21581 * 120.00238 * 179.69105 * 14 13 12 16 16 N 1.34777 * 119.99629 * 359.68126 * 14 13 12 17 17 C 1.46505 * 119.99761 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47032 * 180.02562 * 17 16 14 19 19 C 1.30997 * 120.00145 * 122.90902 * 18 17 16 20 20 C 1.50699 * 120.00324 * 354.41964 * 19 18 17 21 21 C 1.52999 * 117.50114 * 182.39460 * 20 19 18 22 22 C 1.53000 * 117.49844 * 113.73178 * 20 19 18 23 23 C 1.47427 * 108.70569 * 358.58147 * 13 12 11 24 24 H 0.97008 * 120.00224 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99661 * 292.37085 * 10 9 7 26 26 H 1.08995 * 110.72256 * 271.95572 * 11 9 7 27 27 H 1.09003 * 110.72100 * 35.22704 * 11 9 7 28 28 H 1.09005 * 109.99267 * 218.66326 * 12 11 9 29 29 H 1.09000 * 109.77635 * 97.50125 * 12 11 9 30 30 H 0.97003 * 120.00332 * 0.02562 * 16 14 13 31 31 H 1.08997 * 109.47416 * 59.99832 * 17 16 14 32 32 H 1.08998 * 109.47018 * 299.99927 * 17 16 14 33 33 H 1.08007 * 120.00189 * 303.18374 * 18 17 16 34 34 H 1.08006 * 120.00333 * 174.41522 * 19 18 17 35 35 H 1.09002 * 115.54480 * 328.06696 * 20 19 18 36 36 H 1.08998 * 117.50041 * 0.02562 * 21 20 19 37 37 H 1.08997 * 117.49378 * 145.02074 * 21 20 19 38 38 H 1.08999 * 117.49466 * 214.97826 * 22 20 19 39 39 H 1.08995 * 117.50410 * 0.02562 * 22 20 19 40 40 H 1.08995 * 110.36503 * 143.19540 * 23 13 12 41 41 H 1.09004 * 110.36670 * 265.41248 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5942 1.9901 -1.3956 5 1 1.4012 2.6789 0.6002 6 1 3.4944 1.4703 0.7954 7 6 2.0045 -1.1941 -0.0005 8 1 1.4709 -2.1257 0.1166 9 6 3.5025 -1.1992 -0.1645 10 8 3.9294 -0.1072 -0.9814 11 6 4.2138 -1.1735 1.2142 12 6 5.5672 -1.8545 0.9199 13 7 5.3923 -2.6670 -0.2928 14 6 6.3508 -3.4019 -0.8909 15 8 6.0905 -4.0422 -1.8912 16 7 7.5978 -3.4268 -0.3803 17 6 8.6399 -4.2252 -1.0308 18 6 9.9315 -4.0828 -0.2677 19 6 10.5348 -5.1460 0.2031 20 6 9.8765 -6.4970 0.0924 21 6 10.6059 -7.6912 0.7110 22 6 10.5439 -7.5362 -0.8106 23 6 3.9932 -2.5501 -0.7425 24 1 -0.4851 0.8401 0.0004 25 1 3.6530 -0.1759 -1.9056 26 1 4.3610 -0.1481 1.5531 27 1 3.6497 -1.7468 1.9499 28 1 5.8527 -2.4929 1.7560 29 1 6.3324 -1.0967 0.7513 30 1 7.8054 -2.9162 0.4179 31 1 8.7810 -3.8748 -2.0532 32 1 8.3397 -5.2729 -1.0439 33 1 10.3576 -3.1037 -0.1051 34 1 11.5041 -5.0544 0.6707 35 1 8.7874 -6.4943 0.1370 36 1 11.5618 -7.4996 1.1985 37 1 9.9966 -8.4743 1.1622 38 1 9.8939 -8.2175 -1.3597 39 1 11.4594 -7.2429 -1.3243 40 1 3.9446 -2.5369 -1.8313 41 1 3.3975 -3.3727 -0.3468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326766930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:41 Heat of formation + Delta-G solvation = -28.221062 kcal Electronic energy + Delta-G solvation = -21887.930703 eV Core-core repulsion = 18576.351215 eV Total energy + Delta-G solvation = -3311.579488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92421 -38.36670 -37.66282 -35.19534 -34.69233 -32.46909 -32.33872 -30.21477 -28.36349 -26.49321 -24.67277 -22.94997 -22.68063 -22.45658 -19.86058 -19.77786 -19.04530 -17.71426 -17.34715 -16.36777 -15.90327 -15.52618 -15.27335 -15.04902 -14.63992 -14.21378 -13.96220 -13.62742 -13.52792 -12.92229 -12.67223 -12.51874 -12.27158 -11.91837 -11.85447 -11.63526 -11.54834 -11.40611 -11.03523 -10.98395 -10.62551 -10.48081 -10.37792 -10.20651 -9.88322 -9.28930 -9.23541 -8.89077 -8.68684 -8.50650 -7.97619 -6.19223 -4.30902 1.68465 3.05883 3.46279 3.51921 3.53633 3.63552 3.68039 4.28805 4.34248 4.49781 4.60088 4.65621 4.73791 5.00350 5.01941 5.09976 5.15497 5.32475 5.35214 5.53573 5.57107 5.59323 5.68641 5.79422 5.80771 5.89244 5.90843 6.10260 6.23334 6.40855 6.50437 6.54694 6.66157 6.67488 6.73403 7.06109 7.35938 7.49527 8.13041 8.30690 8.63067 8.82188 8.91411 9.42497 10.89652 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041032 B = 0.003329 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.235390 B = 8408.015396 C = 8565.545418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.952 3.048 4 H -0.292 1.292 5 H -0.327 1.327 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.219 3.781 10 O -0.560 6.560 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.629 5.629 14 C 0.718 3.282 15 O -0.599 6.599 16 N -0.747 5.747 17 C 0.164 3.836 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.136 4.136 21 C -0.176 4.176 22 C -0.171 4.171 23 C 0.108 3.892 24 H 0.267 0.733 25 H 0.372 0.628 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.791 -8.687 2.525 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.788 3.212 4 H -0.220 1.220 5 H -0.258 1.258 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.099 0.901 9 C 0.179 3.821 10 O -0.368 6.368 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.479 6.479 16 N -0.404 5.404 17 C 0.040 3.960 18 C -0.189 4.189 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.213 4.213 22 C -0.208 4.208 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.220 0.780 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.733 -8.948 2.293 22.697 hybrid contribution 0.291 0.943 -0.052 0.988 sum 21.023 -8.005 2.241 22.607 Atomic orbital electron populations 1.69973 1.06856 1.27828 1.47597 1.25113 0.94861 1.00515 0.92561 0.85641 0.77569 0.79941 0.78049 1.21974 1.25828 1.19780 1.21104 0.88553 0.95508 1.53775 0.90053 1.20251 0.93711 0.81285 0.86900 1.86079 1.79884 1.46852 1.23951 1.22950 0.92887 1.00860 0.99140 1.22046 1.00089 0.93553 0.86489 1.47709 1.10932 1.48680 1.29220 1.15482 0.79887 0.80006 0.82639 1.90885 1.81304 1.48736 1.26928 1.45121 1.08826 1.53763 1.32662 1.20294 0.83842 0.96093 0.95758 1.22874 0.97261 0.98826 0.99897 1.22273 0.99131 0.92601 0.98485 1.21366 0.99189 0.89010 1.05850 1.22988 1.02257 1.00148 0.95888 1.22974 1.02906 1.01704 0.93178 1.22979 0.78392 1.00186 0.99864 0.92395 0.77973 0.90186 0.89635 0.92765 0.92517 0.77124 0.91004 0.90769 0.86433 0.86689 0.86649 0.88717 0.88591 0.88443 0.88615 0.91230 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.95 23.22 24.86 -169.99 -4.23 18.99 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.33 -8.19 7.11 56.52 0.40 -7.78 16 6 H -0.27 -6.44 5.51 56.52 0.31 -6.13 16 7 C -0.55 -14.49 8.88 -34.44 -0.31 -14.79 16 8 H 0.08 2.32 8.00 -52.49 -0.42 1.90 16 9 C 0.22 4.80 0.70 -89.63 -0.06 4.74 16 10 O -0.56 -12.18 8.63 -35.23 -0.30 -12.48 16 11 C -0.12 -2.30 5.89 -24.89 -0.15 -2.45 16 12 C 0.10 1.63 6.15 -3.06 -0.02 1.61 16 13 N -0.63 -11.54 3.33 -176.23 -0.59 -12.13 16 14 C 0.72 13.16 8.49 -86.91 -0.74 12.43 16 15 O -0.60 -13.12 16.60 5.29 0.09 -13.03 16 16 N -0.75 -10.30 5.51 -66.42 -0.37 -10.67 16 17 C 0.16 1.95 5.91 -5.19 -0.03 1.92 16 18 C -0.17 -1.51 9.63 -36.03 -0.35 -1.85 16 19 C -0.11 -0.86 9.66 -36.03 -0.35 -1.20 16 20 C -0.14 -1.17 4.94 -91.77 -0.45 -1.62 16 21 C -0.18 -1.25 10.24 -26.69 -0.27 -1.53 16 22 C -0.17 -1.29 10.24 -26.69 -0.27 -1.56 16 23 C 0.11 2.23 6.07 -2.53 -0.02 2.21 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.37 7.32 9.01 45.56 0.41 7.73 16 26 H 0.08 1.57 6.60 -51.93 -0.34 1.23 16 27 H 0.09 1.60 8.03 -51.93 -0.42 1.19 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.40 4.60 7.45 -40.82 -0.30 4.29 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.94 5.50 -51.93 -0.29 0.65 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.12 1.15 6.66 -51.93 -0.35 0.80 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 41 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -32.19 333.53 -8.27 -40.46 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.57 Total: 9.35 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.11 Total: -0.14 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.18 Total: -48.18 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.22 Total: -25.51 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.23 Total: 18.99 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.19 -8.27 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.241 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds