Wall clock time and date at job start Tue Mar 31 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47050 * 265.38397 * 3 2 1 5 5 H 1.48504 * 109.47056 * 25.38154 * 3 2 1 6 6 H 1.48492 * 109.46994 * 145.38124 * 3 2 1 7 7 C 1.37881 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99799 * 352.78115 * 7 2 1 9 9 C 1.50689 * 120.00026 * 172.78254 * 7 2 1 10 10 O 1.42900 * 110.88971 * 328.58242 * 9 7 2 11 11 C 1.55156 * 111.03956 * 92.48525 * 9 7 2 12 12 C 1.54333 * 103.02247 * 153.39374 * 11 9 7 13 13 N 1.47016 * 107.26591 * 338.14438 * 12 11 9 14 14 C 1.34781 * 125.64947 * 178.85538 * 13 12 11 15 15 O 1.21581 * 120.00238 * 179.69105 * 14 13 12 16 16 N 1.34777 * 119.99629 * 359.68126 * 14 13 12 17 17 C 1.46505 * 119.99761 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47032 * 180.02562 * 17 16 14 19 19 C 1.30997 * 120.00145 * 122.90902 * 18 17 16 20 20 C 1.50699 * 120.00324 * 354.41964 * 19 18 17 21 21 C 1.52999 * 117.50114 * 182.39460 * 20 19 18 22 22 C 1.53000 * 117.49844 * 113.73178 * 20 19 18 23 23 C 1.47427 * 108.70569 * 358.58147 * 13 12 11 24 24 H 0.97008 * 120.00224 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99661 * 292.37085 * 10 9 7 26 26 H 1.08995 * 110.72256 * 271.95572 * 11 9 7 27 27 H 1.09003 * 110.72100 * 35.22704 * 11 9 7 28 28 H 1.09005 * 109.99267 * 218.66326 * 12 11 9 29 29 H 1.09000 * 109.77635 * 97.50125 * 12 11 9 30 30 H 0.97003 * 120.00332 * 0.02562 * 16 14 13 31 31 H 1.08997 * 109.47416 * 59.99832 * 17 16 14 32 32 H 1.08998 * 109.47018 * 299.99927 * 17 16 14 33 33 H 1.08007 * 120.00189 * 303.18374 * 18 17 16 34 34 H 1.08006 * 120.00333 * 174.41522 * 19 18 17 35 35 H 1.09002 * 115.54480 * 328.06696 * 20 19 18 36 36 H 1.08998 * 117.50041 * 0.02562 * 21 20 19 37 37 H 1.08997 * 117.49378 * 145.02074 * 21 20 19 38 38 H 1.08999 * 117.49466 * 214.97826 * 22 20 19 39 39 H 1.08995 * 117.50410 * 0.02562 * 22 20 19 40 40 H 1.08995 * 110.36503 * 143.19540 * 23 13 12 41 41 H 1.09004 * 110.36670 * 265.41248 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5942 1.9901 -1.3956 5 1 1.4012 2.6789 0.6002 6 1 3.4944 1.4703 0.7954 7 6 2.0045 -1.1941 -0.0005 8 1 1.4709 -2.1257 0.1166 9 6 3.5025 -1.1992 -0.1645 10 8 3.9294 -0.1072 -0.9814 11 6 4.2138 -1.1735 1.2142 12 6 5.5672 -1.8545 0.9199 13 7 5.3923 -2.6670 -0.2928 14 6 6.3508 -3.4019 -0.8909 15 8 6.0905 -4.0422 -1.8912 16 7 7.5978 -3.4268 -0.3803 17 6 8.6399 -4.2252 -1.0308 18 6 9.9315 -4.0828 -0.2677 19 6 10.5348 -5.1460 0.2031 20 6 9.8765 -6.4970 0.0924 21 6 10.6059 -7.6912 0.7110 22 6 10.5439 -7.5362 -0.8106 23 6 3.9932 -2.5501 -0.7425 24 1 -0.4851 0.8401 0.0004 25 1 3.6530 -0.1759 -1.9056 26 1 4.3610 -0.1481 1.5531 27 1 3.6497 -1.7468 1.9499 28 1 5.8527 -2.4929 1.7560 29 1 6.3324 -1.0967 0.7513 30 1 7.8054 -2.9162 0.4179 31 1 8.7810 -3.8748 -2.0532 32 1 8.3397 -5.2729 -1.0439 33 1 10.3576 -3.1037 -0.1051 34 1 11.5041 -5.0544 0.6707 35 1 8.7874 -6.4943 0.1370 36 1 11.5618 -7.4996 1.1985 37 1 9.9966 -8.4743 1.1622 38 1 9.8939 -8.2175 -1.3597 39 1 11.4594 -7.2429 -1.3243 40 1 3.9446 -2.5369 -1.8313 41 1 3.3975 -3.3727 -0.3468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326766930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:41 Heat of formation + Delta-G solvation = -51.608134 kcal Electronic energy + Delta-G solvation = -21888.944843 eV Core-core repulsion = 18576.351215 eV Total energy + Delta-G solvation = -3312.593628 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36054 -39.53317 -38.75271 -36.35544 -36.20878 -34.45140 -33.42383 -31.74495 -29.96100 -27.83723 -26.24192 -23.99655 -23.59477 -23.21313 -21.57008 -21.12352 -20.05015 -19.36149 -18.72434 -17.40586 -17.19043 -16.97625 -16.63418 -16.55577 -16.06232 -15.50742 -15.17804 -14.99580 -14.53687 -14.47149 -14.03438 -13.83150 -13.79773 -13.35346 -13.19102 -13.09212 -12.75353 -12.40298 -12.28588 -12.20587 -12.06656 -11.95208 -11.66878 -11.40682 -11.24163 -11.22286 -10.64011 -10.42340 -10.26640 -9.83219 -9.40230 -8.33391 -6.46879 0.97610 1.52495 1.53714 1.73658 1.78785 2.11094 2.46592 2.97567 3.00769 3.15198 3.50109 3.66215 3.84250 3.97515 4.00894 4.08366 4.13573 4.27166 4.34336 4.37166 4.43194 4.60626 4.64789 4.78933 4.83163 4.89855 4.98024 5.01730 5.17666 5.22156 5.25558 5.26399 5.38754 5.43953 5.54278 5.58215 5.83112 6.05759 6.11128 6.58958 6.90076 7.00905 7.30898 7.52692 8.79628 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041032 B = 0.003329 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.235390 B = 8408.015396 C = 8565.545418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 1.011 2.989 4 H -0.286 1.286 5 H -0.337 1.337 6 H -0.255 1.255 7 C -0.548 4.548 8 H 0.044 0.956 9 C 0.217 3.783 10 O -0.559 6.559 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.631 5.631 14 C 0.713 3.287 15 O -0.642 6.642 16 N -0.727 5.727 17 C 0.163 3.837 18 C -0.176 4.176 19 C -0.092 4.092 20 C -0.156 4.156 21 C -0.166 4.166 22 C -0.173 4.173 23 C 0.117 3.883 24 H 0.267 0.733 25 H 0.380 0.620 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.409 0.591 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.407 -8.222 3.700 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.845 3.155 4 H -0.213 1.213 5 H -0.270 1.270 6 H -0.180 1.180 7 C -0.586 4.586 8 H 0.062 0.938 9 C 0.176 3.824 10 O -0.368 6.368 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.367 5.367 14 C 0.415 3.585 15 O -0.524 6.524 16 N -0.384 5.384 17 C 0.040 3.960 18 C -0.194 4.194 19 C -0.111 4.111 20 C -0.174 4.174 21 C -0.203 4.203 22 C -0.210 4.210 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.410 -8.487 3.498 26.079 hybrid contribution -0.851 0.643 -0.437 1.153 sum 23.558 -7.844 3.062 25.018 Atomic orbital electron populations 1.70093 1.08604 1.28573 1.50209 1.25877 0.95310 1.03780 0.92520 0.84674 0.76610 0.75841 0.78385 1.21339 1.26978 1.17983 1.21333 0.91157 0.93850 1.52290 0.93792 1.20129 0.91383 0.82083 0.88790 1.86037 1.79497 1.46616 1.24638 1.22861 0.94349 1.01529 0.96903 1.22140 0.98623 0.94206 0.86458 1.47625 1.09911 1.49219 1.29975 1.15675 0.80942 0.79622 0.82270 1.90855 1.82215 1.50427 1.28919 1.45021 1.07411 1.53260 1.32671 1.20368 0.84760 0.95072 0.95807 1.22767 0.95897 1.00118 1.00640 1.22484 0.99631 0.91790 0.97164 1.21375 0.98410 0.90116 1.07455 1.23077 1.02583 0.99089 0.95516 1.23039 1.03036 1.01188 0.93731 1.22625 0.80043 0.99029 0.99013 0.92400 0.77093 0.89956 0.89678 0.89337 0.90302 0.75426 0.92197 0.91863 0.84490 0.84268 0.88641 0.87171 0.88443 0.88803 0.87699 0.92436 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.96 21.45 0.30 -56.44 16 2 C 0.02 1.39 5.46 84.66 0.46 1.85 16 3 Si 1.01 47.35 24.86 68.60 1.71 49.05 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.34 -16.31 7.11 99.48 0.71 -15.60 16 6 H -0.25 -11.12 5.51 99.48 0.55 -10.57 16 7 C -0.55 -29.30 8.88 25.60 0.23 -29.07 16 8 H 0.04 2.62 8.00 -2.91 -0.02 2.60 16 9 C 0.22 9.31 0.70 -10.15 -0.01 9.31 16 10 O -0.56 -23.23 8.63 -148.98 -1.29 -24.52 16 11 C -0.12 -4.25 5.89 31.79 0.19 -4.06 16 12 C 0.11 3.07 6.15 86.73 0.53 3.60 16 13 N -0.63 -22.06 3.33 -829.73 -2.76 -24.82 16 14 C 0.71 25.25 8.49 179.05 1.52 26.77 16 15 O -0.64 -28.18 16.60 -3.97 -0.07 -28.25 16 16 N -0.73 -18.43 5.51 -482.30 -2.66 -21.09 16 17 C 0.16 3.65 5.91 85.63 0.51 4.16 16 18 C -0.18 -2.61 9.63 25.65 0.25 -2.36 16 19 C -0.09 -1.20 9.66 25.65 0.25 -0.96 16 20 C -0.16 -2.39 4.94 -11.54 -0.06 -2.45 16 21 C -0.17 -1.99 10.24 30.62 0.31 -1.67 16 22 C -0.17 -2.33 10.24 30.62 0.31 -2.02 16 23 C 0.12 4.80 6.07 86.86 0.53 5.33 16 24 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 25 H 0.38 14.45 9.01 -74.06 -0.67 13.78 16 26 H 0.08 2.94 6.60 -2.39 -0.02 2.93 16 27 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 28 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.41 8.04 7.45 -92.71 -0.69 7.34 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.57 5.50 -2.39 -0.01 1.56 16 33 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.10 1.86 6.66 -2.39 -0.02 1.84 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 2.47 8.02 -2.39 -0.02 2.45 16 41 H 0.06 2.44 7.99 -2.38 -0.02 2.42 16 Total: -1.00 -70.80 333.53 -0.22 -71.01 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.47 Total: 26.63 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.02 Total: 8.42 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.12 Total: -102.35 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -1.35 Total: -52.77 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.71 Total: 49.05 kcal Total: -70.80 -0.22 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.406 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds