Wall clock time and date at job start Tue Mar 31 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46714 * 267.31851 * 3 2 1 5 5 H 1.48497 * 109.47211 * 27.31471 * 3 2 1 6 6 H 1.48501 * 109.47213 * 147.32248 * 3 2 1 7 7 C 1.37875 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99440 * 353.52766 * 7 2 1 9 9 C 1.50691 * 120.00310 * 173.52245 * 7 2 1 10 10 O 1.42900 * 110.88754 * 328.70473 * 9 7 2 11 11 C 1.55155 * 111.04101 * 92.61191 * 9 7 2 12 12 C 1.54333 * 103.02328 * 153.39271 * 11 9 7 13 13 N 1.47020 * 107.26560 * 338.14323 * 12 11 9 14 14 C 1.34781 * 125.64631 * 178.84312 * 13 12 11 15 15 O 1.21592 * 119.99613 * 179.69027 * 14 13 12 16 16 N 1.34778 * 120.00234 * 359.69659 * 14 13 12 17 17 C 1.46494 * 120.00085 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47139 * 179.97438 * 17 16 14 19 19 C 1.31006 * 119.99912 * 124.99968 * 18 17 16 20 20 C 1.50700 * 119.99912 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49560 * 188.62535 * 20 19 18 22 22 C 1.52996 * 117.49576 * 120.00338 * 20 19 18 23 23 C 1.47419 * 108.70557 * 358.58368 * 13 12 11 24 24 H 0.96999 * 120.00681 * 0.02562 * 1 2 3 25 25 H 0.96696 * 114.00153 * 292.32994 * 10 9 7 26 26 H 1.08999 * 110.72001 * 271.95542 * 11 9 7 27 27 H 1.08999 * 110.71895 * 35.22752 * 11 9 7 28 28 H 1.09000 * 109.99653 * 218.66537 * 12 11 9 29 29 H 1.09006 * 109.77582 * 97.49598 * 12 11 9 30 30 H 0.96998 * 119.99797 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47587 * 300.00025 * 17 16 14 32 32 H 1.09005 * 109.47116 * 60.00312 * 17 16 14 33 33 H 1.08003 * 120.00412 * 305.00550 * 18 17 16 34 34 H 1.08003 * 119.99676 * 0.02562 * 19 18 17 35 35 H 1.08997 * 115.55390 * 334.33557 * 20 19 18 36 36 H 1.08993 * 117.50198 * 359.97438 * 21 20 19 37 37 H 1.09003 * 117.49562 * 145.02608 * 21 20 19 38 38 H 1.08997 * 117.49924 * 214.98138 * 22 20 19 39 39 H 1.09009 * 117.50013 * 359.97438 * 22 20 19 40 40 H 1.08999 * 110.36942 * 143.19120 * 23 13 12 41 41 H 1.09005 * 110.36927 * 265.41038 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5532 2.0137 -1.3986 5 1 1.4192 2.6684 0.6424 6 1 3.5172 1.4573 0.7559 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1064 9 6 3.5043 -1.1982 -0.1467 10 8 3.9404 -0.1000 -0.9504 11 6 4.2002 -1.1833 1.2400 12 6 5.5566 -1.8623 0.9556 13 7 5.3952 -2.6654 -0.2652 14 6 6.3603 -3.3957 -0.8584 15 8 6.1110 -4.0283 -1.8665 16 7 7.6016 -3.4250 -0.3341 17 6 8.6504 -4.2192 -0.9785 18 6 9.9339 -4.0819 -0.2007 19 6 10.5536 -5.1509 0.2344 20 6 11.8374 -5.0136 1.0117 21 6 12.6182 -6.2933 1.3176 22 6 11.8639 -5.5715 2.4360 23 6 4.0013 -2.5447 -0.7297 24 1 -0.4851 0.8400 -0.0004 25 1 3.6750 -0.1618 -1.8782 26 1 4.3437 -0.1606 1.5885 27 1 3.6278 -1.7621 1.9649 28 1 5.8327 -2.5073 1.7898 29 1 6.3238 -1.1034 0.8014 30 1 7.8004 -2.9201 0.4700 31 1 8.3500 -5.2667 -1.0025 32 1 8.8031 -3.8615 -1.9968 33 1 10.3427 -3.1022 -0.0020 34 1 10.1449 -6.1306 0.0354 35 1 12.4115 -4.1082 0.8151 36 1 12.2032 -7.2345 0.9571 37 1 13.7064 -6.2299 1.3222 38 1 12.4557 -5.0334 3.1764 39 1 10.9525 -6.0375 2.8111 40 1 3.9648 -2.5229 -1.8188 41 1 3.4010 -3.3702 -0.3471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326766931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:44 Heat of formation + Delta-G solvation = -32.458225 kcal Electronic energy + Delta-G solvation = -21616.067162 eV Core-core repulsion = 18304.303937 eV Total energy + Delta-G solvation = -3311.763225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91203 -38.20324 -37.74000 -35.36989 -34.70278 -32.50146 -32.34533 -30.22858 -28.37700 -26.71753 -24.78843 -22.75993 -22.58208 -21.74476 -20.27954 -19.83408 -19.49943 -17.88525 -17.37155 -16.30686 -15.81538 -15.56519 -15.19767 -15.04858 -14.68055 -14.33915 -13.96030 -13.58271 -13.29277 -13.03427 -12.67864 -12.37972 -12.30621 -11.97214 -11.92803 -11.68350 -11.56235 -11.51938 -11.26043 -11.02199 -10.72494 -10.49935 -10.38318 -10.20257 -9.88738 -9.30311 -9.22862 -8.91378 -8.66548 -8.52390 -7.98487 -6.19009 -4.31042 1.66733 3.03801 3.46000 3.52095 3.52719 3.58190 3.69145 4.17551 4.34184 4.49972 4.52473 4.62065 4.75448 4.87695 5.01907 5.11834 5.15033 5.24991 5.34804 5.44671 5.52174 5.58365 5.61140 5.71713 5.78166 5.79367 5.88828 6.09816 6.29947 6.37728 6.49995 6.54220 6.64028 6.66891 6.73092 7.05691 7.34773 7.49043 8.12849 8.29365 8.62694 8.81970 8.89995 9.42457 10.89819 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036392 B = 0.003132 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.217527 B = 8938.182874 C = 9199.372787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.327 1.327 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.718 3.282 15 O -0.599 6.599 16 N -0.747 5.747 17 C 0.171 3.829 18 C -0.168 4.168 19 C -0.108 4.108 20 C -0.130 4.130 21 C -0.176 4.176 22 C -0.171 4.171 23 C 0.108 3.892 24 H 0.267 0.733 25 H 0.371 0.629 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.396 0.604 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.087 -7.398 3.971 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.131 4.131 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.047 3.953 18 C -0.186 4.186 19 C -0.127 4.127 20 C -0.148 4.148 21 C -0.213 4.213 22 C -0.208 4.208 23 C -0.015 4.015 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.029 -7.655 3.740 23.619 hybrid contribution 0.278 0.905 -0.094 0.951 sum 22.306 -6.750 3.646 23.589 Atomic orbital electron populations 1.69966 1.06851 1.27820 1.47638 1.25116 0.94877 1.00532 0.92565 0.85634 0.77754 0.79930 0.77923 1.22079 1.25847 1.19593 1.21105 0.88396 0.95483 1.53911 0.90042 1.20252 0.93663 0.81176 0.87042 1.86103 1.80090 1.46580 1.23926 1.22947 0.92873 1.00855 0.99116 1.22052 1.00142 0.93689 0.86307 1.47705 1.11091 1.49154 1.28564 1.15469 0.79824 0.79959 0.82712 1.90889 1.81489 1.49045 1.26420 1.45073 1.09072 1.54170 1.32025 1.20087 0.83660 0.95773 0.95795 1.22841 0.96729 0.99090 0.99966 1.22297 0.94994 0.98619 0.96834 1.21246 0.97179 0.98429 0.97960 1.22984 0.98933 0.96049 1.03341 1.22970 1.02840 1.03923 0.91085 1.22991 0.78509 1.00211 0.99748 0.92404 0.78052 0.90187 0.89629 0.92752 0.92500 0.77050 0.91493 0.90930 0.86668 0.86833 0.87290 0.88543 0.88607 0.88509 0.88489 0.91209 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.95 23.18 24.93 -169.99 -4.24 18.94 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.33 -8.19 7.11 56.52 0.40 -7.78 16 6 H -0.27 -6.39 5.42 56.52 0.31 -6.08 16 7 C -0.55 -14.45 8.89 -34.45 -0.31 -14.76 16 8 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 9 C 0.22 4.79 0.70 -89.62 -0.06 4.73 16 10 O -0.56 -12.14 8.52 -35.23 -0.30 -12.44 16 11 C -0.12 -2.29 5.90 -24.89 -0.15 -2.44 16 12 C 0.10 1.62 6.15 -3.06 -0.02 1.60 16 13 N -0.63 -11.53 3.33 -176.22 -0.59 -12.12 16 14 C 0.72 13.17 8.49 -86.91 -0.74 12.43 16 15 O -0.60 -13.12 16.60 5.28 0.09 -13.03 16 16 N -0.75 -10.27 5.51 -66.41 -0.37 -10.64 16 17 C 0.17 2.00 6.11 -5.20 -0.03 1.97 16 18 C -0.17 -1.49 9.27 -36.03 -0.33 -1.82 16 19 C -0.11 -0.88 9.27 -36.03 -0.33 -1.22 16 20 C -0.13 -0.92 5.99 -91.77 -0.55 -1.47 16 21 C -0.18 -1.09 10.23 -26.73 -0.27 -1.36 16 22 C -0.17 -1.11 10.23 -26.73 -0.27 -1.38 16 23 C 0.11 2.22 6.07 -2.53 -0.02 2.20 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.37 7.28 8.98 45.56 0.41 7.69 16 26 H 0.08 1.56 6.65 -51.93 -0.35 1.22 16 27 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.40 4.60 7.45 -40.82 -0.30 4.29 16 31 H 0.07 0.82 7.79 -51.93 -0.40 0.41 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.12 0.92 8.05 -52.48 -0.42 0.50 16 34 H 0.11 0.90 7.84 -52.48 -0.41 0.49 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 41 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -32.24 337.48 -8.48 -40.72 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.76 Total: 8.42 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.18 Total: 0.43 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.18 Total: -48.13 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.21 Total: -25.47 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.24 Total: 18.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.24 -8.48 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.264 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds