Wall clock time and date at job start Tue Mar 31 2020 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46714 * 267.31851 * 3 2 1 5 5 H 1.48497 * 109.47211 * 27.31471 * 3 2 1 6 6 H 1.48501 * 109.47213 * 147.32248 * 3 2 1 7 7 C 1.37875 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99440 * 353.52766 * 7 2 1 9 9 C 1.50691 * 120.00310 * 173.52245 * 7 2 1 10 10 O 1.42900 * 110.88754 * 328.70473 * 9 7 2 11 11 C 1.55155 * 111.04101 * 92.61191 * 9 7 2 12 12 C 1.54333 * 103.02328 * 153.39271 * 11 9 7 13 13 N 1.47020 * 107.26560 * 338.14323 * 12 11 9 14 14 C 1.34781 * 125.64631 * 178.84312 * 13 12 11 15 15 O 1.21592 * 119.99613 * 179.69027 * 14 13 12 16 16 N 1.34778 * 120.00234 * 359.69659 * 14 13 12 17 17 C 1.46494 * 120.00085 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47139 * 179.97438 * 17 16 14 19 19 C 1.31006 * 119.99912 * 124.99968 * 18 17 16 20 20 C 1.50700 * 119.99912 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49560 * 188.62535 * 20 19 18 22 22 C 1.52996 * 117.49576 * 120.00338 * 20 19 18 23 23 C 1.47419 * 108.70557 * 358.58368 * 13 12 11 24 24 H 0.96999 * 120.00681 * 0.02562 * 1 2 3 25 25 H 0.96696 * 114.00153 * 292.32994 * 10 9 7 26 26 H 1.08999 * 110.72001 * 271.95542 * 11 9 7 27 27 H 1.08999 * 110.71895 * 35.22752 * 11 9 7 28 28 H 1.09000 * 109.99653 * 218.66537 * 12 11 9 29 29 H 1.09006 * 109.77582 * 97.49598 * 12 11 9 30 30 H 0.96998 * 119.99797 * 359.97438 * 16 14 13 31 31 H 1.09001 * 109.47587 * 300.00025 * 17 16 14 32 32 H 1.09005 * 109.47116 * 60.00312 * 17 16 14 33 33 H 1.08003 * 120.00412 * 305.00550 * 18 17 16 34 34 H 1.08003 * 119.99676 * 0.02562 * 19 18 17 35 35 H 1.08997 * 115.55390 * 334.33557 * 20 19 18 36 36 H 1.08993 * 117.50198 * 359.97438 * 21 20 19 37 37 H 1.09003 * 117.49562 * 145.02608 * 21 20 19 38 38 H 1.08997 * 117.49924 * 214.98138 * 22 20 19 39 39 H 1.09009 * 117.50013 * 359.97438 * 22 20 19 40 40 H 1.08999 * 110.36942 * 143.19120 * 23 13 12 41 41 H 1.09005 * 110.36927 * 265.41038 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5532 2.0137 -1.3986 5 1 1.4192 2.6684 0.6424 6 1 3.5172 1.4573 0.7559 7 6 2.0046 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1064 9 6 3.5043 -1.1982 -0.1467 10 8 3.9404 -0.1000 -0.9504 11 6 4.2002 -1.1833 1.2400 12 6 5.5566 -1.8623 0.9556 13 7 5.3952 -2.6654 -0.2652 14 6 6.3603 -3.3957 -0.8584 15 8 6.1110 -4.0283 -1.8665 16 7 7.6016 -3.4250 -0.3341 17 6 8.6504 -4.2192 -0.9785 18 6 9.9339 -4.0819 -0.2007 19 6 10.5536 -5.1509 0.2344 20 6 11.8374 -5.0136 1.0117 21 6 12.6182 -6.2933 1.3176 22 6 11.8639 -5.5715 2.4360 23 6 4.0013 -2.5447 -0.7297 24 1 -0.4851 0.8400 -0.0004 25 1 3.6750 -0.1618 -1.8782 26 1 4.3437 -0.1606 1.5885 27 1 3.6278 -1.7621 1.9649 28 1 5.8327 -2.5073 1.7898 29 1 6.3238 -1.1034 0.8014 30 1 7.8004 -2.9201 0.4700 31 1 8.3500 -5.2667 -1.0025 32 1 8.8031 -3.8615 -1.9968 33 1 10.3427 -3.1022 -0.0020 34 1 10.1449 -6.1306 0.0354 35 1 12.4115 -4.1082 0.8151 36 1 12.2032 -7.2345 0.9571 37 1 13.7064 -6.2299 1.3222 38 1 12.4557 -5.0334 3.1764 39 1 10.9525 -6.0375 2.8111 40 1 3.9648 -2.5229 -1.8188 41 1 3.4010 -3.3702 -0.3471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326766931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:43 Heat of formation + Delta-G solvation = -55.571123 kcal Electronic energy + Delta-G solvation = -21617.069412 eV Core-core repulsion = 18304.303937 eV Total energy + Delta-G solvation = -3312.765476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35372 -39.47134 -38.60437 -36.45299 -36.29474 -34.44829 -33.46515 -31.75088 -29.96184 -27.96604 -26.39891 -24.03390 -23.21658 -22.46879 -21.55212 -21.29664 -20.51777 -19.54553 -18.93079 -17.39672 -17.13459 -16.96528 -16.60514 -16.48704 -15.92169 -15.52926 -15.22167 -15.05859 -14.53617 -14.32649 -14.04948 -13.91113 -13.60837 -13.34062 -13.17263 -13.02156 -12.73744 -12.42523 -12.30327 -12.20827 -12.18252 -11.94586 -11.87343 -11.42356 -11.23630 -11.19520 -10.63130 -10.41914 -10.29729 -9.81233 -9.40858 -8.32807 -6.46564 0.94817 1.52289 1.54451 1.74569 1.78582 2.10514 2.47073 2.98025 3.02973 3.15896 3.50245 3.57788 3.84664 4.03697 4.06174 4.08499 4.17004 4.25931 4.27781 4.43445 4.43761 4.61052 4.63532 4.75174 4.81495 4.83759 4.97305 5.04765 5.17431 5.22552 5.24907 5.27312 5.38844 5.41441 5.54729 5.65434 5.78483 6.06084 6.10080 6.59357 6.90081 7.00131 7.31281 7.51792 8.80140 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036392 B = 0.003132 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.217527 B = 8938.182874 C = 9199.372787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 1.012 2.988 4 H -0.288 1.288 5 H -0.338 1.338 6 H -0.253 1.253 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.217 3.783 10 O -0.559 6.559 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.631 5.631 14 C 0.714 3.286 15 O -0.641 6.641 16 N -0.728 5.728 17 C 0.171 3.829 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.174 4.174 22 C -0.171 4.171 23 C 0.116 3.884 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.442 -6.929 5.107 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.176 4.176 3 Si 0.845 3.155 4 H -0.215 1.215 5 H -0.270 1.270 6 H -0.178 1.178 7 C -0.585 4.585 8 H 0.062 0.938 9 C 0.176 3.824 10 O -0.367 6.367 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.367 5.367 14 C 0.416 3.584 15 O -0.524 6.524 16 N -0.384 5.384 17 C 0.048 3.952 18 C -0.189 4.189 19 C -0.118 4.118 20 C -0.158 4.158 21 C -0.211 4.211 22 C -0.208 4.208 23 C -0.008 4.008 24 H 0.076 0.924 25 H 0.228 0.772 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.246 0.754 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.447 -7.192 4.906 26.895 hybrid contribution -0.761 0.618 -0.458 1.082 sum 24.686 -6.574 4.449 25.931 Atomic orbital electron populations 1.70086 1.08594 1.28552 1.50272 1.25882 0.95329 1.03800 0.92548 0.84660 0.76812 0.75839 0.78177 1.21495 1.27035 1.17818 1.21334 0.91008 0.93818 1.52374 0.93759 1.20134 0.91307 0.81988 0.88970 1.86060 1.79688 1.46344 1.24645 1.22859 0.94378 1.01527 0.96848 1.22144 0.98657 0.94378 0.86260 1.47621 1.10092 1.49680 1.29314 1.15651 0.80851 0.79584 0.82346 1.90861 1.82392 1.50727 1.28386 1.44971 1.07696 1.53684 1.32048 1.20156 0.84300 0.94890 0.95893 1.22641 0.95608 1.00014 1.00629 1.22432 0.95165 0.98420 0.95804 1.21291 0.96880 0.99300 0.98323 1.23076 0.99576 0.95636 1.02826 1.23033 1.02929 1.03850 0.91005 1.22637 0.80135 0.99046 0.98943 0.92423 0.77152 0.89960 0.89670 0.89312 0.90315 0.75381 0.92296 0.91834 0.85283 0.86937 0.86532 0.88510 0.87509 0.87487 0.88862 0.92370 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 2 C 0.02 1.34 5.46 84.65 0.46 1.81 16 3 Si 1.01 47.28 24.93 68.60 1.71 48.99 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.34 -16.33 7.11 99.48 0.71 -15.62 16 6 H -0.25 -11.03 5.42 99.48 0.54 -10.49 16 7 C -0.55 -29.15 8.89 25.60 0.23 -28.92 16 8 H 0.04 2.63 8.00 -2.91 -0.02 2.61 16 9 C 0.22 9.27 0.70 -10.15 -0.01 9.26 16 10 O -0.56 -23.11 8.52 -148.98 -1.27 -24.38 16 11 C -0.12 -4.21 5.90 31.79 0.19 -4.03 16 12 C 0.11 3.05 6.15 86.73 0.53 3.58 16 13 N -0.63 -21.90 3.33 -829.71 -2.76 -24.66 16 14 C 0.71 25.04 8.49 179.05 1.52 26.56 16 15 O -0.64 -27.90 16.60 -4.01 -0.07 -27.97 16 16 N -0.73 -18.20 5.51 -482.29 -2.66 -20.85 16 17 C 0.17 3.71 6.11 85.63 0.52 4.24 16 18 C -0.17 -2.59 9.27 25.64 0.24 -2.35 16 19 C -0.10 -1.38 9.27 25.64 0.24 -1.15 16 20 C -0.14 -1.61 5.99 -11.54 -0.07 -1.68 16 21 C -0.17 -1.73 10.23 30.60 0.31 -1.41 16 22 C -0.17 -1.78 10.23 30.59 0.31 -1.47 16 23 C 0.12 4.75 6.07 86.86 0.53 5.27 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.38 14.34 8.98 -74.06 -0.67 13.67 16 26 H 0.08 2.93 6.65 -2.39 -0.02 2.91 16 27 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.41 7.97 7.45 -92.71 -0.69 7.28 16 31 H 0.06 1.38 7.79 -2.39 -0.02 1.36 16 32 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.13 1.64 8.05 -2.91 -0.02 1.62 16 34 H 0.11 1.58 7.84 -2.91 -0.02 1.56 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 41 H 0.06 2.45 7.99 -2.38 -0.02 2.43 16 Total: -1.00 -70.23 337.48 -0.23 -70.45 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.49 Total: 25.09 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.01 Total: 9.71 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -5.12 Total: -101.89 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -1.34 Total: -52.35 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.71 Total: 48.99 kcal Total: -70.23 -0.23 -70.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326766931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.882 kcal (2) G-P(sol) polarization free energy of solvation -70.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds