Wall clock time and date at job start Tue Mar 31 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47173 * 270.00485 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99846 * 3 2 1 6 6 H 1.48497 * 109.47356 * 150.00348 * 3 2 1 7 7 C 1.38952 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99465 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99912 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99929 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46947 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99680 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99878 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47114 * 186.39273 * 16 14 13 18 18 C 1.53005 * 109.47105 * 186.11360 * 17 16 14 19 19 C 1.53008 * 117.49692 * 124.89953 * 18 17 16 20 20 C 1.52997 * 117.49910 * 56.23962 * 18 17 16 21 21 C 1.53002 * 109.47228 * 66.11523 * 17 16 14 22 22 C 1.53004 * 117.49977 * 248.74669 * 21 17 16 23 23 C 1.53002 * 117.49633 * 180.08738 * 21 17 16 24 24 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99566 * 0.02562 * 9 7 2 26 26 H 1.08991 * 109.47574 * 59.99463 * 12 10 9 27 27 H 1.09001 * 109.46668 * 299.99290 * 12 10 9 28 28 H 0.96995 * 120.00167 * 359.97438 * 13 12 10 29 29 H 1.08997 * 109.47320 * 66.39307 * 16 14 13 30 30 H 1.09006 * 109.47475 * 306.39290 * 16 14 13 31 31 H 1.08997 * 109.47295 * 306.11252 * 17 16 14 32 32 H 1.08999 * 115.54842 * 270.56365 * 18 17 16 33 33 H 1.09000 * 117.49516 * 359.97438 * 19 18 17 34 34 H 1.08993 * 117.49814 * 145.02002 * 19 18 17 35 35 H 1.09002 * 117.49977 * 214.98196 * 20 18 17 36 36 H 1.09007 * 117.49724 * 359.97438 * 20 18 17 37 37 H 1.09000 * 115.55090 * 34.42000 * 21 17 16 38 38 H 1.09000 * 117.49460 * 359.97438 * 22 21 17 39 39 H 1.08992 * 117.49612 * 145.02064 * 22 21 17 40 40 H 1.09009 * 117.49712 * 214.97464 * 23 21 17 41 41 H 1.09001 * 117.50480 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5544 -7.4688 -0.0018 16 6 2.7261 -8.3925 -0.0028 17 6 1.9679 -9.7116 -0.1632 18 6 2.9422 -10.8816 -0.0119 19 6 2.6138 -11.9430 1.0401 20 6 3.7604 -10.9572 1.2787 21 6 1.3208 -9.7627 -1.5487 22 6 -0.2058 -9.6878 -1.6187 23 6 0.5099 -11.0106 -1.9040 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6176 -4.9205 -0.8912 27 1 0.6171 -4.9209 0.8887 28 1 3.1497 -5.7991 -0.0019 29 1 3.2758 -8.4015 0.9384 30 1 3.4251 -8.2722 -0.8305 31 1 1.1946 -9.7816 0.6018 32 1 3.4214 -11.2162 -0.9320 33 1 1.7038 -11.8074 1.6246 34 1 2.8773 -12.9757 0.8123 35 1 4.7778 -11.3420 1.2079 36 1 3.6048 -10.1732 2.0199 37 1 1.8854 -9.2846 -2.3492 38 1 -0.7491 -9.6026 -0.6776 39 1 -0.6454 -9.1607 -2.4653 40 1 0.5406 -11.3531 -2.9385 41 1 0.4377 -11.7953 -1.1510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328648834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:50 Heat of formation + Delta-G solvation = -39.373776 kcal Electronic energy + Delta-G solvation = -21401.966388 eV Core-core repulsion = 18089.903282 eV Total energy + Delta-G solvation = -3312.063106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95084 -38.62343 -37.81082 -36.20635 -34.40298 -33.60730 -31.86416 -31.35822 -27.94859 -25.49120 -24.15643 -22.54796 -22.33117 -21.40860 -20.28766 -19.70171 -19.41111 -18.09939 -17.09508 -16.06822 -15.82935 -15.43202 -15.34100 -15.00712 -14.53718 -14.33986 -14.22394 -13.88395 -13.57700 -13.16364 -12.51669 -12.31668 -12.15157 -11.84060 -11.74272 -11.63512 -11.56258 -11.40076 -11.15918 -11.10971 -10.46742 -10.46387 -10.34090 -10.32054 -9.99442 -9.83924 -9.64021 -9.47524 -8.71722 -8.62944 -8.10507 -6.51941 -3.93981 2.93102 3.11357 3.21387 3.26063 3.39253 3.65729 3.74278 3.88889 4.11485 4.42391 4.64951 4.71811 4.85137 4.89399 4.99220 5.07662 5.14509 5.16623 5.22624 5.30801 5.42380 5.46821 5.64672 5.66019 5.71760 5.75839 5.89035 5.92825 5.96049 5.98419 6.08232 6.08898 6.12977 6.27498 6.39005 6.75272 7.45525 7.88584 7.92086 8.44536 8.54960 9.04266 9.39178 9.87139 10.65026 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.002933 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.799300 B = 9545.682602 C =10075.664004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.711 5.711 14 C 0.509 3.491 15 O -0.541 6.541 16 C -0.132 4.132 17 C -0.010 4.010 18 C -0.141 4.141 19 C -0.180 4.180 20 C -0.184 4.184 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.187 4.187 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.410 0.590 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -20.216 -0.534 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.366 5.366 14 C 0.295 3.705 15 O -0.419 6.419 16 C -0.172 4.172 17 C -0.028 4.028 18 C -0.159 4.159 19 C -0.217 4.217 20 C -0.221 4.221 21 C -0.158 4.158 22 C -0.188 4.188 23 C -0.224 4.224 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.247 0.753 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.531 -20.165 -0.527 20.330 hybrid contribution 0.264 1.063 -0.052 1.097 sum 2.794 -19.102 -0.580 19.314 Atomic orbital electron populations 1.69614 1.06018 1.28524 1.49379 1.25328 0.95664 0.99937 0.96807 0.85814 0.79232 0.80497 0.78495 1.20262 1.20791 1.19310 1.19729 0.93455 0.82031 1.48236 0.87696 1.41805 1.09476 1.04507 1.62673 1.19790 0.88307 0.85056 0.85482 1.90492 1.13750 1.86866 1.57349 1.20908 0.91954 0.85881 1.03030 1.45769 1.11423 1.04783 1.74584 1.20593 0.89890 0.83716 0.76315 1.90673 1.16714 1.84776 1.49723 1.21696 0.98224 0.92807 1.04479 1.20083 0.95527 0.90879 0.96359 1.22307 1.01430 0.98473 0.93739 1.23017 1.00011 0.95490 1.03143 1.23000 0.96280 1.02675 1.00111 1.22111 0.94474 1.01883 0.97338 1.22840 0.94267 0.98605 1.03116 1.22961 1.05958 0.91869 1.01639 0.91589 0.77050 0.90030 0.90052 0.75292 0.88752 0.88976 0.90055 0.87678 0.88894 0.89060 0.88880 0.88676 0.88500 0.88456 0.89553 0.89518 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.43 9.82 7.85 -10.99 -0.09 9.73 16 11 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 12 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 13 N -0.71 -11.58 5.53 -61.47 -0.34 -11.92 16 14 C 0.51 7.57 7.52 -10.99 -0.08 7.49 16 15 O -0.54 -9.37 13.81 5.56 0.08 -9.29 16 16 C -0.13 -1.44 5.04 -27.89 -0.14 -1.59 16 17 C -0.01 -0.10 1.84 -90.62 -0.17 -0.27 16 18 C -0.14 -1.21 4.87 -90.61 -0.44 -1.65 16 19 C -0.18 -1.42 10.18 -26.69 -0.27 -1.70 16 20 C -0.18 -1.45 9.64 -26.69 -0.26 -1.71 16 21 C -0.14 -1.54 4.36 -90.62 -0.39 -1.94 16 22 C -0.15 -1.81 8.80 -26.69 -0.23 -2.04 16 23 C -0.19 -1.84 9.88 -26.69 -0.26 -2.10 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 25 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.41 6.57 7.44 -40.82 -0.30 6.27 16 29 H 0.09 0.91 6.85 -51.93 -0.36 0.55 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 32 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.77 7.34 -51.92 -0.38 0.39 16 37 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 38 H 0.10 1.28 7.84 -51.93 -0.41 0.87 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -30.05 344.62 -8.26 -38.31 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.30 Total: 16.02 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.61 Total: -1.67 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.33 Total: -48.88 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.16 Total: -24.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.05 -8.26 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328648834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.068 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds