Wall clock time and date at job start Tue Mar 31 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47173 * 270.00485 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99846 * 3 2 1 6 6 H 1.48497 * 109.47356 * 150.00348 * 3 2 1 7 7 C 1.38952 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99465 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00116 * 359.97438 * 7 2 1 10 10 C 1.34770 * 119.99912 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99929 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46947 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99680 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99878 * 179.97438 * 14 13 12 17 17 C 1.52996 * 109.47114 * 186.39273 * 16 14 13 18 18 C 1.53005 * 109.47105 * 186.11360 * 17 16 14 19 19 C 1.53008 * 117.49692 * 124.89953 * 18 17 16 20 20 C 1.52997 * 117.49910 * 56.23962 * 18 17 16 21 21 C 1.53002 * 109.47228 * 66.11523 * 17 16 14 22 22 C 1.53004 * 117.49977 * 248.74669 * 21 17 16 23 23 C 1.53002 * 117.49633 * 180.08738 * 21 17 16 24 24 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99566 * 0.02562 * 9 7 2 26 26 H 1.08991 * 109.47574 * 59.99463 * 12 10 9 27 27 H 1.09001 * 109.46668 * 299.99290 * 12 10 9 28 28 H 0.96995 * 120.00167 * 359.97438 * 13 12 10 29 29 H 1.08997 * 109.47320 * 66.39307 * 16 14 13 30 30 H 1.09006 * 109.47475 * 306.39290 * 16 14 13 31 31 H 1.08997 * 109.47295 * 306.11252 * 17 16 14 32 32 H 1.08999 * 115.54842 * 270.56365 * 18 17 16 33 33 H 1.09000 * 117.49516 * 359.97438 * 19 18 17 34 34 H 1.08993 * 117.49814 * 145.02002 * 19 18 17 35 35 H 1.09002 * 117.49977 * 214.98196 * 20 18 17 36 36 H 1.09007 * 117.49724 * 359.97438 * 20 18 17 37 37 H 1.09000 * 115.55090 * 34.42000 * 21 17 16 38 38 H 1.09000 * 117.49460 * 359.97438 * 22 21 17 39 39 H 1.08992 * 117.49612 * 145.02064 * 22 21 17 40 40 H 1.09009 * 117.49712 * 214.97464 * 23 21 17 41 41 H 1.09001 * 117.50480 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5544 -7.4688 -0.0018 16 6 2.7261 -8.3925 -0.0028 17 6 1.9679 -9.7116 -0.1632 18 6 2.9422 -10.8816 -0.0119 19 6 2.6138 -11.9430 1.0401 20 6 3.7604 -10.9572 1.2787 21 6 1.3208 -9.7627 -1.5487 22 6 -0.2058 -9.6878 -1.6187 23 6 0.5099 -11.0106 -1.9040 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6176 -4.9205 -0.8912 27 1 0.6171 -4.9209 0.8887 28 1 3.1497 -5.7991 -0.0019 29 1 3.2758 -8.4015 0.9384 30 1 3.4251 -8.2722 -0.8305 31 1 1.1946 -9.7816 0.6018 32 1 3.4214 -11.2162 -0.9320 33 1 1.7038 -11.8074 1.6246 34 1 2.8773 -12.9757 0.8123 35 1 4.7778 -11.3420 1.2079 36 1 3.6048 -10.1732 2.0199 37 1 1.8854 -9.2846 -2.3492 38 1 -0.7491 -9.6026 -0.6776 39 1 -0.6454 -9.1607 -2.4653 40 1 0.5406 -11.3531 -2.9385 41 1 0.4377 -11.7953 -1.1510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328648834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:50 Heat of formation + Delta-G solvation = -58.100287 kcal Electronic energy + Delta-G solvation = -21402.778431 eV Core-core repulsion = 18089.903282 eV Total energy + Delta-G solvation = -3312.875149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13878 -40.14609 -39.02773 -36.96791 -36.22523 -35.17563 -33.39558 -32.75845 -29.44094 -26.92672 -25.63881 -23.21599 -23.13966 -22.23085 -21.44209 -21.34847 -20.45026 -20.04346 -18.45621 -17.29566 -17.02232 -16.89529 -16.62931 -16.30922 -16.07280 -15.62538 -15.49948 -15.18716 -14.73107 -14.43045 -13.91419 -13.72104 -13.55697 -13.19163 -13.09620 -12.90014 -12.46670 -12.39163 -12.31868 -12.27203 -12.13162 -11.94022 -11.57677 -11.24921 -11.08066 -10.87703 -10.68502 -10.56804 -10.51926 -10.13989 -10.04304 -8.51933 -6.02288 1.35834 1.42196 1.54957 1.73119 1.91277 2.10234 2.33520 2.94903 3.04446 3.15252 3.15380 3.62739 3.78398 3.98801 4.08366 4.17882 4.22758 4.26744 4.29468 4.38032 4.44794 4.46014 4.49880 4.66252 4.79899 4.87006 4.89766 4.90993 5.10544 5.14584 5.17496 5.33388 5.34533 5.37169 5.37975 5.40961 5.56965 5.91355 6.46310 6.63064 7.02709 7.29466 7.44494 7.93810 8.65100 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034398 B = 0.002933 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.799300 B = 9545.682602 C =10075.664004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.123 3.877 13 N -0.714 5.714 14 C 0.508 3.492 15 O -0.566 6.566 16 C -0.125 4.125 17 C -0.004 4.004 18 C -0.142 4.142 19 C -0.179 4.179 20 C -0.181 4.181 21 C -0.144 4.144 22 C -0.172 4.172 23 C -0.165 4.165 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.412 0.588 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -21.203 -0.684 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.005 4.005 13 N -0.368 5.368 14 C 0.296 3.704 15 O -0.445 6.445 16 C -0.165 4.165 17 C -0.023 4.023 18 C -0.160 4.160 19 C -0.216 4.216 20 C -0.218 4.218 21 C -0.162 4.162 22 C -0.209 4.209 23 C -0.202 4.202 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.250 0.750 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.519 -21.179 -0.677 21.480 hybrid contribution -0.077 1.305 0.002 1.307 sum 3.442 -19.874 -0.675 20.181 Atomic orbital electron populations 1.69681 1.07044 1.29645 1.49370 1.26142 0.96535 1.02724 0.95779 0.84866 0.77932 0.76443 0.78738 1.19530 1.19645 1.19382 1.19742 0.92966 0.83576 1.50382 0.89565 1.41866 1.09566 1.04688 1.63512 1.20485 0.88152 0.85981 0.83418 1.90467 1.15168 1.87576 1.57980 1.20698 0.91849 0.84163 1.03762 1.45829 1.11104 1.04753 1.75152 1.21303 0.90261 0.83815 0.75004 1.90674 1.18147 1.85009 1.50691 1.21755 0.97514 0.91059 1.06148 1.19998 0.95448 0.91473 0.95407 1.22204 1.01393 0.97968 0.94484 1.23073 0.99888 0.96093 1.02556 1.23069 0.96899 1.02516 0.99308 1.22192 0.93639 1.02673 0.97733 1.22757 0.95099 1.00966 1.02101 1.22993 1.03549 0.91035 1.02606 0.91067 0.76777 0.89263 0.89233 0.75021 0.87011 0.87134 0.91953 0.86796 0.89532 0.87771 0.87605 0.89013 0.88432 0.90255 0.90281 0.88159 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.78 29.55 68.60 2.03 43.80 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.33 5.29 -306.99 -1.62 -29.95 16 10 C 0.43 20.00 7.85 87.66 0.69 20.68 16 11 O -0.62 -32.16 15.24 -3.06 -0.05 -32.21 16 12 C 0.12 4.50 6.15 85.63 0.53 5.03 16 13 N -0.71 -22.70 5.53 -466.79 -2.58 -25.28 16 14 C 0.51 14.67 7.52 87.65 0.66 15.33 16 15 O -0.57 -19.50 13.81 -3.04 -0.04 -19.54 16 16 C -0.13 -2.52 5.04 29.85 0.15 -2.37 16 17 C 0.00 -0.09 1.84 -10.79 -0.02 -0.11 16 18 C -0.14 -2.11 4.87 -10.79 -0.05 -2.16 16 19 C -0.18 -2.46 10.18 30.62 0.31 -2.15 16 20 C -0.18 -2.42 9.64 30.62 0.30 -2.13 16 21 C -0.14 -3.01 4.36 -10.79 -0.05 -3.06 16 22 C -0.17 -4.11 8.80 30.62 0.27 -3.84 16 23 C -0.17 -2.99 9.88 30.62 0.30 -2.69 16 24 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 26 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 27 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.41 12.88 7.44 -92.71 -0.69 12.19 16 29 H 0.11 1.90 6.85 -2.39 -0.02 1.88 16 30 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.06 1.47 7.32 -2.39 -0.02 1.46 16 32 H 0.11 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.29 7.34 -2.38 -0.02 1.28 16 37 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 38 H 0.08 2.16 7.84 -2.39 -0.02 2.14 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.10 344.62 2.01 -62.09 By element: Atomic # 1 Polarization: 45.56 SS G_CDS: -0.38 Total: 45.18 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.36 Total: 4.60 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.92 Total: -103.92 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -64.10 2.01 -62.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328648834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.989 kcal (2) G-P(sol) polarization free energy of solvation -64.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds