Wall clock time and date at job start Tue Mar 31 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47089 * 270.00165 * 3 2 1 5 5 H 1.48498 * 109.46766 * 29.99763 * 3 2 1 6 6 H 1.48493 * 109.47078 * 149.99831 * 3 2 1 7 7 C 1.38809 * 119.99437 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00377 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49461 * 179.97438 * 9 7 2 11 11 C 1.53939 * 86.11687 * 155.36087 * 10 9 7 12 12 C 1.53008 * 113.74180 * 269.15587 * 11 10 9 13 13 C 1.52998 * 109.47158 * 172.32638 * 12 11 10 14 14 O 1.42896 * 109.46865 * 178.20088 * 13 12 11 15 15 N 1.46497 * 113.74201 * 137.95453 * 11 10 9 16 16 C 1.34780 * 120.00068 * 66.61513 * 15 11 10 17 17 O 1.21282 * 119.99953 * 354.80141 * 16 15 11 18 18 C 1.50697 * 120.00046 * 174.80662 * 16 15 11 19 19 C 1.54631 * 111.03874 * 179.97438 * 18 16 15 20 20 C 1.51103 * 104.82816 * 142.72057 * 19 18 16 21 21 C 1.30522 * 111.10303 * 343.50726 * 20 19 18 22 22 C 1.51105 * 111.10699 * 359.97438 * 21 20 19 23 23 C 1.47813 * 134.45566 * 359.86503 * 9 7 2 24 24 H 0.96999 * 119.99746 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.76576 * 41.05598 * 10 9 7 26 26 H 1.09001 * 113.87409 * 269.67878 * 10 9 7 27 27 H 1.09005 * 109.47074 * 292.32605 * 12 11 10 28 28 H 1.08994 * 109.46808 * 52.32371 * 12 11 10 29 29 H 1.09007 * 109.47021 * 298.19691 * 13 12 11 30 30 H 1.08995 * 109.47288 * 58.19626 * 13 12 11 31 31 H 0.96702 * 113.99709 * 180.02562 * 14 13 12 32 32 H 0.96996 * 120.00052 * 246.60965 * 15 11 10 33 33 H 1.08997 * 110.94900 * 56.00924 * 18 16 15 34 34 H 1.09008 * 110.38642 * 23.85240 * 19 18 16 35 35 H 1.08999 * 110.38858 * 261.59188 * 19 18 16 36 36 H 1.08003 * 124.45046 * 163.49043 * 20 19 18 37 37 H 1.08000 * 124.44864 * 179.97438 * 21 20 19 38 38 H 1.08997 * 110.38626 * 135.24130 * 22 21 20 39 39 H 1.09000 * 110.38989 * 257.51297 * 22 21 20 40 40 H 1.09005 * 113.76788 * 90.37930 * 23 9 7 41 41 H 1.08997 * 113.83751 * 318.91827 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6408 12 6 0.3642 -4.0561 2.1706 13 6 -1.0689 -4.1462 2.6986 14 8 -1.0499 -4.1634 4.1273 15 7 -0.3336 -5.2612 0.0980 16 6 0.1786 -6.4905 0.3056 17 8 1.2503 -6.6153 0.8596 18 6 -0.5802 -7.7099 -0.1506 19 6 0.1935 -9.0048 0.1898 20 6 -0.8730 -10.0004 0.5831 21 6 -2.0010 -9.4002 0.8492 22 6 -1.8749 -7.9041 0.6784 23 6 -0.1059 -2.7570 0.0026 24 1 -0.4850 0.8401 0.0004 25 1 2.5622 -4.0324 0.6558 26 1 1.8325 -4.2368 -0.9962 27 1 0.9422 -4.9023 2.5422 28 1 0.8197 -3.1268 2.5125 29 1 -1.6383 -3.2832 2.3532 30 1 -1.5351 -5.0601 2.3303 31 1 -1.9266 -4.2200 4.5316 32 1 -1.1527 -5.1568 -0.4109 33 1 -0.8011 -7.6553 -1.2165 34 1 0.8764 -8.8315 1.0216 35 1 0.7415 -9.3602 -0.6827 36 1 -0.7217 -11.0684 0.6367 37 1 -2.9058 -9.9064 1.1518 38 1 -2.7345 -7.5101 0.1363 39 1 -1.7836 -7.4174 1.6494 40 1 -0.5313 -2.8721 -0.9944 41 1 -0.7190 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329652127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:52 Heat of formation + Delta-G solvation = -15.159358 kcal Electronic energy + Delta-G solvation = -22747.524280 eV Core-core repulsion = 19436.511190 eV Total energy + Delta-G solvation = -3311.013090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31826 -38.69511 -37.01047 -36.37479 -33.64456 -31.95949 -30.46304 -29.36852 -28.25764 -27.00703 -25.04892 -23.65467 -22.51557 -21.35852 -19.64627 -18.94629 -18.56152 -17.31215 -16.93984 -16.77647 -16.25889 -15.44759 -15.03057 -14.73637 -14.30691 -14.10613 -13.66347 -13.61081 -12.95104 -12.57262 -12.50115 -12.29790 -11.96532 -11.82270 -11.70733 -11.49553 -11.34399 -11.20748 -11.05443 -10.91729 -10.75270 -10.70356 -10.15392 -9.89551 -9.68970 -9.56395 -9.17120 -9.02834 -8.89048 -8.56959 -6.92591 -5.80670 -3.12282 2.10271 2.90502 3.38079 3.42699 3.45844 3.48574 4.39250 4.44700 4.48102 4.52334 4.87782 5.07024 5.11980 5.21945 5.26104 5.46310 5.48666 5.50085 5.53919 5.66543 5.71395 5.76914 5.81219 5.88707 5.95211 6.10798 6.34752 6.35896 6.48912 6.52762 6.66461 6.72032 6.75763 6.85055 7.11508 7.32076 7.48084 7.86001 7.89101 7.94616 8.56835 9.01502 9.67564 10.54101 11.37032 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027243 B = 0.004414 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.533238 B = 6342.407646 C = 6816.966284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.123 3.877 12 C -0.094 4.094 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.715 5.715 16 C 0.521 3.479 17 O -0.533 6.533 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.087 4.087 23 C 0.166 3.834 24 H 0.254 0.746 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.372 0.628 32 H 0.397 0.603 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 -16.426 0.901 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.332 5.332 10 C 0.002 3.998 11 C 0.037 3.963 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.379 6.379 15 N -0.366 5.366 16 C 0.306 3.694 17 O -0.410 6.410 18 C -0.139 4.139 19 C -0.126 4.126 20 C -0.179 4.179 21 C -0.190 4.190 22 C -0.125 4.125 23 C 0.040 3.960 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.217 0.783 32 H 0.230 0.770 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.320 -16.081 1.217 17.321 hybrid contribution -0.695 0.857 -0.472 1.200 sum -7.014 -15.224 0.745 16.779 Atomic orbital electron populations 1.69787 1.05011 1.25413 1.56815 1.24760 0.95704 0.97513 1.02315 0.86095 0.78723 0.83285 0.77547 1.21639 1.21605 1.20531 1.19018 0.90337 0.81587 1.43743 0.90009 1.45729 1.01857 0.99546 1.86038 1.22780 0.94598 0.85515 0.96881 1.22928 0.95727 0.84597 0.93059 1.21317 0.95467 1.04167 0.92333 1.22136 0.98361 0.99074 0.79943 1.86502 1.33521 1.97518 1.20376 1.46196 1.28719 1.05967 1.55673 1.20273 0.85866 0.84269 0.79000 1.90678 1.21435 1.86298 1.42570 1.22247 0.96351 0.93928 1.01418 1.21285 0.97328 0.91279 1.02672 1.23329 0.95195 0.99152 1.00203 1.23199 0.98488 0.95455 1.01880 1.21346 0.96178 0.94732 1.00227 1.22578 0.89018 0.87467 0.96899 0.93626 0.93070 0.94721 0.90971 0.89184 0.93264 0.94610 0.78283 0.76961 0.87991 0.88613 0.90921 0.85784 0.85774 0.90508 0.90261 0.95204 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.61 -15.46 3.55 -177.51 -0.63 -16.09 16 10 C 0.13 2.83 7.53 -2.97 -0.02 2.81 16 11 C 0.12 2.33 0.67 -134.04 -0.09 2.24 16 12 C -0.09 -1.82 4.82 -26.73 -0.13 -1.95 16 13 C 0.08 1.33 6.83 37.16 0.25 1.58 16 14 O -0.57 -9.11 13.66 -35.23 -0.48 -9.59 16 15 N -0.71 -10.55 4.54 -49.07 -0.22 -10.77 16 16 C 0.52 7.76 6.73 -10.99 -0.07 7.68 16 17 O -0.53 -10.00 13.91 5.56 0.08 -9.92 16 18 C -0.12 -1.31 3.56 -89.88 -0.32 -1.63 16 19 C -0.09 -0.98 6.17 -26.83 -0.17 -1.15 16 20 C -0.16 -1.51 10.78 -35.70 -0.38 -1.89 16 21 C -0.17 -1.54 10.77 -35.69 -0.38 -1.93 16 22 C -0.09 -0.83 6.38 -26.65 -0.17 -1.00 16 23 C 0.17 3.72 6.69 -2.83 -0.02 3.70 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.47 7.10 -51.93 -0.37 1.10 16 28 H 0.09 2.02 8.02 -51.93 -0.42 1.60 16 29 H 0.05 0.80 7.52 -51.92 -0.39 0.41 16 30 H 0.04 0.50 7.63 -51.93 -0.40 0.11 16 31 H 0.37 3.87 9.12 45.56 0.42 4.28 16 32 H 0.40 4.75 8.71 -40.82 -0.36 4.40 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.28 6.96 -51.92 -0.36 0.92 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.99 6.54 -51.93 -0.34 1.65 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -33.09 335.61 -7.90 -40.99 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.55 Total: 7.39 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.76 Total: 1.87 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.22 Total: -52.89 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.40 Total: -19.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.09 -7.90 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329652127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.833 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds