Wall clock time and date at job start Tue Mar 31 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47089 * 270.00165 * 3 2 1 5 5 H 1.48498 * 109.46766 * 29.99763 * 3 2 1 6 6 H 1.48493 * 109.47078 * 149.99831 * 3 2 1 7 7 C 1.38809 * 119.99437 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99762 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00377 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49461 * 179.97438 * 9 7 2 11 11 C 1.53939 * 86.11687 * 155.36087 * 10 9 7 12 12 C 1.53008 * 113.74180 * 269.15587 * 11 10 9 13 13 C 1.52998 * 109.47158 * 172.32638 * 12 11 10 14 14 O 1.42896 * 109.46865 * 178.20088 * 13 12 11 15 15 N 1.46497 * 113.74201 * 137.95453 * 11 10 9 16 16 C 1.34780 * 120.00068 * 66.61513 * 15 11 10 17 17 O 1.21282 * 119.99953 * 354.80141 * 16 15 11 18 18 C 1.50697 * 120.00046 * 174.80662 * 16 15 11 19 19 C 1.54631 * 111.03874 * 179.97438 * 18 16 15 20 20 C 1.51103 * 104.82816 * 142.72057 * 19 18 16 21 21 C 1.30522 * 111.10303 * 343.50726 * 20 19 18 22 22 C 1.51105 * 111.10699 * 359.97438 * 21 20 19 23 23 C 1.47813 * 134.45566 * 359.86503 * 9 7 2 24 24 H 0.96999 * 119.99746 * 359.97438 * 1 2 3 25 25 H 1.09004 * 113.76576 * 41.05598 * 10 9 7 26 26 H 1.09001 * 113.87409 * 269.67878 * 10 9 7 27 27 H 1.09005 * 109.47074 * 292.32605 * 12 11 10 28 28 H 1.08994 * 109.46808 * 52.32371 * 12 11 10 29 29 H 1.09007 * 109.47021 * 298.19691 * 13 12 11 30 30 H 1.08995 * 109.47288 * 58.19626 * 13 12 11 31 31 H 0.96702 * 113.99709 * 180.02562 * 14 13 12 32 32 H 0.96996 * 120.00052 * 246.60965 * 15 11 10 33 33 H 1.08997 * 110.94900 * 56.00924 * 18 16 15 34 34 H 1.09008 * 110.38642 * 23.85240 * 19 18 16 35 35 H 1.08999 * 110.38858 * 261.59188 * 19 18 16 36 36 H 1.08003 * 124.45046 * 163.49043 * 20 19 18 37 37 H 1.08000 * 124.44864 * 179.97438 * 21 20 19 38 38 H 1.08997 * 110.38626 * 135.24130 * 22 21 20 39 39 H 1.09000 * 110.38989 * 257.51297 * 22 21 20 40 40 H 1.09005 * 113.76788 * 90.37930 * 23 9 7 41 41 H 1.08997 * 113.83751 * 318.91827 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6408 12 6 0.3642 -4.0561 2.1706 13 6 -1.0689 -4.1462 2.6986 14 8 -1.0499 -4.1634 4.1273 15 7 -0.3336 -5.2612 0.0980 16 6 0.1786 -6.4905 0.3056 17 8 1.2503 -6.6153 0.8596 18 6 -0.5802 -7.7099 -0.1506 19 6 0.1935 -9.0048 0.1898 20 6 -0.8730 -10.0004 0.5831 21 6 -2.0010 -9.4002 0.8492 22 6 -1.8749 -7.9041 0.6784 23 6 -0.1059 -2.7570 0.0026 24 1 -0.4850 0.8401 0.0004 25 1 2.5622 -4.0324 0.6558 26 1 1.8325 -4.2368 -0.9962 27 1 0.9422 -4.9023 2.5422 28 1 0.8197 -3.1268 2.5125 29 1 -1.6383 -3.2832 2.3532 30 1 -1.5351 -5.0601 2.3303 31 1 -1.9266 -4.2200 4.5316 32 1 -1.1527 -5.1568 -0.4109 33 1 -0.8011 -7.6553 -1.2165 34 1 0.8764 -8.8315 1.0216 35 1 0.7415 -9.3602 -0.6827 36 1 -0.7217 -11.0684 0.6367 37 1 -2.9058 -9.9064 1.1518 38 1 -2.7345 -7.5101 0.1363 39 1 -1.7836 -7.4174 1.6494 40 1 -0.5313 -2.8721 -0.9944 41 1 -0.7190 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329652127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:51 Heat of formation + Delta-G solvation = -39.726105 kcal Electronic energy + Delta-G solvation = -22748.589574 eV Core-core repulsion = 19436.511190 eV Total energy + Delta-G solvation = -3312.078384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64983 -40.01487 -38.15816 -37.71112 -35.27207 -33.80117 -32.00654 -30.32324 -29.10507 -28.83808 -26.86033 -25.25464 -23.74236 -23.00336 -20.81381 -20.18104 -19.57669 -18.78312 -18.51388 -18.14459 -17.23606 -16.91783 -16.64236 -16.30747 -15.82979 -15.52831 -15.29751 -14.95202 -14.38941 -13.95388 -13.68665 -13.53204 -13.33566 -13.12407 -12.98214 -12.92500 -12.81387 -12.59193 -12.57368 -12.30231 -12.14172 -12.01288 -11.95269 -11.73020 -11.39179 -10.98755 -10.88398 -10.58310 -10.03850 -9.74084 -8.97000 -7.94119 -5.27094 1.42094 1.45685 1.47100 1.55828 1.70624 2.14880 2.49369 3.13951 3.25508 3.37262 3.55753 3.60719 3.71818 3.96891 4.12764 4.25050 4.31495 4.34393 4.43447 4.47280 4.64324 4.70779 4.71482 4.83603 4.84677 4.88291 4.99486 5.02603 5.11772 5.12235 5.17762 5.21947 5.26375 5.46592 5.66116 5.73306 5.88754 6.05167 6.67425 6.89659 6.91099 7.36542 7.55671 8.49111 9.22722 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027243 B = 0.004414 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.533238 B = 6342.407646 C = 6816.966284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.055 4.055 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.632 5.632 10 C 0.126 3.874 11 C 0.156 3.844 12 C -0.088 4.088 13 C 0.093 3.907 14 O -0.593 6.593 15 N -0.703 5.703 16 C 0.521 3.479 17 O -0.574 6.574 18 C -0.111 4.111 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.166 4.166 22 C -0.087 4.087 23 C 0.173 3.827 24 H 0.252 0.748 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.415 0.585 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -17.755 0.467 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.249 4.249 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.359 5.359 10 C -0.001 4.001 11 C 0.068 3.932 12 C -0.127 4.127 13 C 0.015 3.985 14 O -0.401 6.401 15 N -0.356 5.356 16 C 0.308 3.692 17 O -0.453 6.453 18 C -0.133 4.133 19 C -0.130 4.130 20 C -0.188 4.188 21 C -0.184 4.184 22 C -0.124 4.124 23 C 0.047 3.953 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.252 0.748 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.136 -17.448 0.775 19.268 hybrid contribution -0.106 1.215 -0.311 1.259 sum -8.243 -16.233 0.464 18.212 Atomic orbital electron populations 1.69934 1.06082 1.25850 1.57535 1.25525 0.96653 1.00417 1.02332 0.85104 0.77665 0.79173 0.77526 1.21131 1.21589 1.19871 1.19316 0.90669 0.83094 1.43758 0.90459 1.46008 1.03494 1.00118 1.86275 1.22856 0.96017 0.84122 0.97072 1.22165 0.93504 0.84960 0.92579 1.21172 0.97555 1.01434 0.92573 1.21956 0.95782 1.00323 0.80405 1.86440 1.36066 1.97570 1.20071 1.45949 1.29113 1.04779 1.55735 1.20984 0.85421 0.84931 0.77835 1.90677 1.23488 1.86844 1.44323 1.22272 0.96614 0.91375 1.02996 1.21284 0.97699 0.92088 1.01940 1.23401 0.94655 0.99730 1.01028 1.23414 0.99134 0.94968 1.00874 1.21398 0.95947 0.95451 0.99649 1.22465 0.87310 0.88669 0.96839 0.93938 0.94557 0.94195 0.92211 0.93099 0.93427 0.91806 0.75343 0.74773 0.85489 0.91495 0.90390 0.84121 0.83498 0.87884 0.91386 0.94683 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.33 11.39 21.65 0.25 -55.09 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 3 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.81 10.70 84.03 0.90 -12.91 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.14 3.55 -715.53 -2.54 -35.68 16 10 C 0.13 5.66 7.53 86.48 0.65 6.31 16 11 C 0.16 5.91 0.67 5.37 0.00 5.91 16 12 C -0.09 -3.48 4.82 30.60 0.15 -3.33 16 13 C 0.09 2.89 6.83 71.98 0.49 3.39 16 14 O -0.59 -18.09 13.66 -148.98 -2.03 -20.12 16 15 N -0.70 -19.76 4.54 -427.56 -1.94 -21.70 16 16 C 0.52 14.88 6.73 87.66 0.59 15.47 16 17 O -0.57 -21.65 13.91 -3.04 -0.04 -21.70 16 18 C -0.11 -2.19 3.56 -10.32 -0.04 -2.23 16 19 C -0.09 -1.93 6.17 30.53 0.19 -1.74 16 20 C -0.17 -2.74 10.78 26.27 0.28 -2.46 16 21 C -0.17 -2.38 10.77 26.27 0.28 -2.10 16 22 C -0.09 -1.36 6.38 30.65 0.20 -1.17 16 23 C 0.17 7.80 6.69 86.44 0.58 8.38 16 24 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.49 7.10 -2.38 -0.02 2.47 16 28 H 0.05 2.38 8.02 -2.39 -0.02 2.36 16 29 H 0.05 1.51 7.52 -2.38 -0.02 1.49 16 30 H 0.06 1.64 7.63 -2.39 -0.02 1.62 16 31 H 0.40 7.41 9.12 -74.06 -0.68 6.73 16 32 H 0.42 8.85 8.71 -92.71 -0.81 8.04 16 33 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.79 6.96 -2.38 -0.02 1.78 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.25 7.90 -2.39 -0.02 1.24 16 40 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 2.97 6.54 -2.39 -0.02 2.95 16 Total: -1.00 -73.32 335.61 0.02 -73.30 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.44 Total: 22.20 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.74 Total: 10.85 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.23 Total: -112.46 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.08 Total: -41.82 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.32 0.02 -73.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329652127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.571 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds