Wall clock time and date at job start Tue Mar 31 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00181 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99840 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99930 * 3 2 1 7 7 C 1.37880 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99973 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00592 * 359.73053 * 12 11 10 14 14 C 1.49456 * 119.99966 * 180.02562 * 12 11 10 15 15 O 1.21355 * 119.99792 * 359.72883 * 14 12 11 16 16 N 1.34777 * 119.99994 * 179.73002 * 14 12 11 17 17 C 1.46496 * 119.99614 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.46851 * 179.97438 * 17 16 14 19 19 C 1.53007 * 115.55143 * 179.91075 * 18 17 16 20 20 C 1.52999 * 117.49681 * 34.33144 * 19 18 17 21 21 C 1.53004 * 117.49512 * 325.67181 * 19 18 17 22 22 C 1.53005 * 117.49880 * 34.20557 * 18 17 16 23 23 C 1.52998 * 117.50241 * 325.58380 * 18 17 16 24 24 H 0.97000 * 119.99443 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47543 * 60.00149 * 9 7 2 26 26 H 1.08993 * 109.47202 * 299.99623 * 9 7 2 27 27 H 1.09007 * 109.46761 * 59.99814 * 10 9 7 28 28 H 1.08997 * 109.46989 * 300.00628 * 10 9 7 29 29 H 0.97004 * 120.00009 * 0.02562 * 11 10 9 30 30 H 0.96996 * 119.99887 * 359.97438 * 16 14 12 31 31 H 1.09000 * 109.47287 * 299.99298 * 17 16 14 32 32 H 1.09002 * 109.47320 * 59.99900 * 17 16 14 33 33 H 1.08995 * 115.55211 * 180.02562 * 19 18 17 34 34 H 1.09000 * 117.49837 * 359.97438 * 20 19 18 35 35 H 1.08994 * 117.49716 * 145.02477 * 20 19 18 36 36 H 1.09003 * 117.49760 * 214.97827 * 21 19 18 37 37 H 1.08992 * 117.50193 * 359.97394 * 21 19 18 38 38 H 1.08998 * 117.49612 * 359.97438 * 22 18 17 39 39 H 1.08999 * 117.49598 * 145.02045 * 22 18 17 40 40 H 1.09000 * 117.50042 * 214.98140 * 23 18 17 41 41 H 1.09003 * 117.49507 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0007 13 8 3.4001 -6.0981 -0.0051 14 6 1.4393 -7.3923 0.0008 15 8 0.2258 -7.3923 0.0062 16 7 2.1132 -8.5595 -0.0051 17 6 1.3806 -9.8281 -0.0056 18 6 2.3748 -10.9911 -0.0135 19 6 1.7544 -12.3897 -0.0127 20 6 0.4393 -12.5795 -0.7711 21 6 0.4478 -12.5824 0.7596 22 6 3.6904 -10.8009 0.7442 23 6 3.6815 -10.7983 -0.7857 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 0.5427 -4.9308 0.0011 30 1 3.0831 -8.5595 -0.0098 31 1 0.7576 -9.8884 0.8868 32 1 0.7503 -9.8834 -0.8932 33 1 2.4627 -13.2182 -0.0179 34 1 0.0158 -11.7079 -1.2703 35 1 0.2822 -13.5330 -1.2752 36 1 0.2963 -13.5379 1.2619 37 1 0.0304 -11.7131 1.2675 38 1 3.8477 -9.8472 1.2479 39 1 4.1141 -11.6723 1.2435 40 1 4.0993 -11.6679 -1.2930 41 1 3.8326 -9.8431 -1.2886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329730666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:45 Heat of formation + Delta-G solvation = -49.779627 kcal Electronic energy + Delta-G solvation = -21101.394962 eV Core-core repulsion = 17788.880625 eV Total energy + Delta-G solvation = -3312.514338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88181 -40.42604 -39.34981 -37.00388 -36.53247 -35.05464 -34.58661 -31.71523 -29.13298 -27.20205 -25.22502 -23.93027 -23.63211 -22.90073 -22.79667 -21.58065 -20.38809 -19.09453 -18.60549 -17.97906 -17.23619 -17.13057 -16.64680 -16.45638 -16.04483 -15.99396 -15.64197 -14.99372 -14.97593 -14.31749 -14.22950 -14.18125 -14.09052 -13.27146 -12.95251 -12.88787 -12.58550 -12.53364 -12.33146 -12.29393 -12.15265 -12.06175 -11.70288 -11.68976 -11.44890 -10.94996 -10.76246 -10.62637 -10.60453 -10.23873 -10.08839 -8.24119 -6.35410 0.26306 1.25231 1.43352 1.43601 1.55213 2.06353 2.39098 2.50611 2.62781 3.10947 3.22522 3.37003 3.46231 3.58623 3.86730 3.91449 4.11844 4.17149 4.37172 4.38721 4.43892 4.58820 4.63242 4.75917 4.79935 4.87700 4.91746 4.94716 5.04823 5.06521 5.19161 5.19978 5.28774 5.29028 5.41217 5.53832 5.74115 5.85919 6.11960 6.29205 6.63756 6.78338 6.87551 7.34251 8.88012 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044133 B = 0.002601 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.300377 B =10763.263688 C =11235.377231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.687 5.687 12 C 0.500 3.500 13 O -0.548 6.548 14 C 0.514 3.486 15 O -0.539 6.539 16 N -0.689 5.689 17 C 0.151 3.849 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.182 4.182 21 C -0.182 4.182 22 C -0.169 4.169 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.415 0.585 30 H 0.418 0.582 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -27.021 -0.040 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.015 3.985 11 N -0.338 5.338 12 C 0.281 3.719 13 O -0.427 6.427 14 C 0.294 3.706 15 O -0.417 6.417 16 N -0.344 5.344 17 C 0.028 3.972 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.218 4.218 21 C -0.219 4.219 22 C -0.206 4.206 23 C -0.206 4.206 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.251 0.749 30 H 0.257 0.743 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.564 -26.905 -0.034 27.290 hybrid contribution -0.006 1.165 -0.010 1.165 sum 4.559 -25.741 -0.044 26.141 Atomic orbital electron populations 1.70080 1.07725 1.28052 1.50971 1.25930 0.95779 1.03325 0.94410 0.85396 0.78628 0.78205 0.78518 1.19756 1.20758 1.18731 1.21452 0.93775 0.91531 1.51554 0.91655 1.19178 0.94346 0.91924 0.96463 1.21498 0.95103 0.80682 1.01230 1.46067 1.11937 1.05443 1.70368 1.20278 0.87554 0.85668 0.78406 1.90717 1.13906 1.87876 1.50192 1.19985 0.87253 0.85459 0.77913 1.90762 1.14015 1.87777 1.49106 1.45840 1.11951 1.04651 1.71942 1.20988 0.93784 0.79553 1.02839 1.20986 0.89064 0.93597 1.07768 1.21586 0.91018 0.94255 1.05925 1.23085 1.00356 1.03717 0.94686 1.23086 1.00506 1.03713 0.94559 1.23183 0.98590 1.04083 0.94745 1.23182 0.98731 1.04076 0.94624 0.92555 0.97421 0.97396 0.91940 0.91914 0.74898 0.74269 0.90502 0.90515 0.85754 0.89328 0.87407 0.87414 0.89328 0.89077 0.86594 0.86599 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.93 5.09 29.85 0.15 1.08 16 10 C 0.14 5.77 5.61 86.38 0.48 6.26 16 11 N -0.69 -25.22 5.55 -464.41 -2.58 -27.80 16 12 C 0.50 17.12 7.89 87.27 0.69 17.81 16 13 O -0.55 -20.31 16.48 -3.25 -0.05 -20.36 16 14 C 0.51 15.29 7.89 87.27 0.69 15.98 16 15 O -0.54 -18.20 16.48 -3.26 -0.05 -18.25 16 16 N -0.69 -15.63 4.99 -464.41 -2.32 -17.95 16 17 C 0.15 2.82 4.84 86.38 0.42 3.24 16 18 C -0.11 -1.57 2.51 -52.18 -0.13 -1.70 16 19 C -0.11 -1.24 5.85 -10.79 -0.06 -1.30 16 20 C -0.18 -2.11 9.92 30.62 0.30 -1.81 16 21 C -0.18 -2.11 9.92 30.62 0.30 -1.81 16 22 C -0.17 -2.14 9.47 30.60 0.29 -1.85 16 23 C -0.17 -2.14 9.47 30.59 0.29 -1.85 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.06 2.64 8.14 -2.39 -0.02 2.63 16 29 H 0.41 14.69 7.94 -92.71 -0.74 13.96 16 30 H 0.42 8.68 5.05 -92.71 -0.47 8.21 16 31 H 0.08 1.51 6.90 -2.39 -0.02 1.49 16 32 H 0.08 1.50 6.91 -2.39 -0.02 1.49 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.20 6.75 -2.39 -0.02 1.18 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.20 6.75 -2.39 -0.02 1.18 16 38 H 0.09 1.33 7.00 -2.39 -0.02 1.31 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.33 7.02 -2.39 -0.02 1.31 16 Total: -1.00 -64.63 344.31 1.28 -63.34 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.15 Total: 25.45 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 4.12 Total: 4.89 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.61 Total: -100.47 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.11 Total: -38.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.63 1.28 -63.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329730666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.565 kcal (2) G-P(sol) polarization free energy of solvation -64.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds