Wall clock time and date at job start Tue Mar 31 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52994 * 110.43588 * 181.84180 * 13 11 10 15 15 C 1.54896 * 110.75549 * 172.62872 * 14 13 11 16 16 C 1.54266 * 104.19359 * 203.74681 * 15 14 13 17 17 C 1.53866 * 106.60225 * 23.60974 * 16 15 14 18 18 C 1.54268 * 106.59827 * 359.97438 * 17 16 15 19 19 C 1.54632 * 110.48212 * 59.30131 * 13 11 10 20 20 C 1.54486 * 101.76267 * 266.12070 * 19 13 11 21 21 N 1.46765 * 105.47342 * 334.58580 * 20 19 13 22 22 C 1.34419 * 111.30280 * 17.01646 * 21 20 19 23 23 O 1.21279 * 124.94196 * 179.62702 * 22 21 20 24 24 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 26 26 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 27 27 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 28 28 H 1.08998 * 110.67630 * 296.06454 * 14 13 11 29 29 H 1.09007 * 110.48198 * 322.42423 * 15 14 13 30 30 H 1.08998 * 110.48766 * 85.06402 * 15 14 13 31 31 H 1.09003 * 110.02459 * 264.32051 * 16 15 14 32 32 H 1.08999 * 110.07199 * 142.91833 * 16 15 14 33 33 H 1.09003 * 110.02892 * 240.71799 * 17 16 15 34 34 H 1.08993 * 110.07653 * 119.31006 * 17 16 15 35 35 H 1.09003 * 110.48490 * 217.71186 * 18 17 16 36 36 H 1.08997 * 110.59988 * 95.12788 * 18 17 16 37 37 H 1.08997 * 110.97057 * 24.24050 * 19 13 11 38 38 H 1.09005 * 110.96833 * 147.97061 * 19 13 11 39 39 H 1.09001 * 110.24575 * 93.59017 * 20 19 13 40 40 H 1.09005 * 110.24275 * 215.49793 * 20 19 13 41 41 H 0.96998 * 124.34700 * 196.99292 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 6 7.3565 -4.2684 0.0265 15 6 7.8763 -5.7164 0.2063 16 6 9.2780 -5.5409 0.8262 17 6 9.2834 -4.1671 1.5191 18 6 7.8850 -3.5553 1.2955 19 6 5.3054 -4.9954 -1.2590 20 6 4.0283 -5.6679 -0.7083 21 7 4.2502 -5.8062 0.7359 22 6 5.2512 -5.0127 1.1544 23 8 5.6369 -4.9273 2.3010 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.3695 -3.3126 -0.0010 28 1 7.7727 -3.8145 -0.8728 29 1 7.2273 -6.2735 0.8821 30 1 7.9459 -6.2193 -0.7582 31 1 10.0377 -5.5682 0.0450 32 1 9.4654 -6.3281 1.5565 33 1 10.0458 -3.5275 1.0741 34 1 9.4729 -4.2867 2.5857 35 1 7.9611 -2.4812 1.1263 36 1 7.2358 -3.7613 2.1465 37 1 5.0644 -4.2998 -2.0627 38 1 6.0261 -5.7413 -1.5942 39 1 3.1588 -5.0385 -0.8978 40 1 3.8908 -6.6478 -1.1657 41 1 3.7398 -6.3944 1.3142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331557975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:58 Heat of formation + Delta-G solvation = -84.690510 kcal Electronic energy + Delta-G solvation = -23332.269231 eV Core-core repulsion = 20018.241044 eV Total energy + Delta-G solvation = -3314.028187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47344 -38.39392 -37.45092 -36.38061 -34.35728 -32.47168 -32.11587 -28.86365 -28.53683 -28.16196 -26.13168 -23.05479 -21.96916 -21.66637 -20.27867 -20.01591 -18.89549 -17.72908 -17.43250 -16.53915 -15.72513 -15.54890 -14.93254 -14.88437 -14.56873 -14.32073 -13.99836 -13.64289 -13.44241 -13.14982 -12.96100 -12.74924 -12.41450 -12.33110 -12.15005 -11.64847 -11.30822 -11.13509 -10.99117 -10.91023 -10.83499 -10.67227 -10.48016 -10.30774 -10.00039 -9.54876 -9.52941 -9.18392 -9.08748 -8.81440 -8.23139 -6.25011 -4.27646 2.49731 2.98303 3.24350 3.30664 3.32198 3.40476 3.77771 4.24254 4.30741 4.37060 4.50301 4.70894 4.83232 4.89487 4.98577 5.10608 5.24104 5.37083 5.40690 5.57220 5.59968 5.69644 5.73014 5.79321 5.83892 5.88604 5.94640 6.08697 6.21435 6.36266 6.65883 6.66796 6.70578 6.76656 6.99912 7.02076 7.13380 7.33103 8.05072 8.21105 8.42294 8.68473 8.80890 9.34712 10.86819 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.005311 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.958225 B = 5270.725446 C = 5915.050104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.220 3.780 10 N -0.702 5.702 11 C 0.522 3.478 12 O -0.535 6.535 13 C -0.109 4.109 14 C -0.052 4.052 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.134 4.134 19 C -0.125 4.125 20 C 0.093 3.907 21 N -0.731 5.731 22 C 0.538 3.462 23 O -0.511 6.511 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.393 0.607 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.431 -14.507 -3.016 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.098 3.902 10 N -0.351 5.351 11 C 0.305 3.695 12 O -0.413 6.413 13 C -0.116 4.116 14 C -0.071 4.071 15 C -0.159 4.159 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.171 4.171 19 C -0.163 4.163 20 C -0.031 4.031 21 N -0.388 5.388 22 C 0.323 3.677 23 O -0.385 6.385 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.228 0.772 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 13.069 -13.562 -2.466 18.995 hybrid contribution -0.426 0.238 0.117 0.501 sum 12.643 -13.324 -2.350 18.518 Atomic orbital electron populations 1.69873 1.06208 1.27486 1.49254 1.24778 0.94783 0.99153 0.93757 0.86827 0.80664 0.83226 0.79072 1.19779 1.20840 1.18459 1.21041 0.88381 0.95183 1.53602 0.90385 1.19545 0.95373 0.78318 0.96973 1.46278 1.05370 1.11262 1.72228 1.19626 0.83319 0.88800 0.77712 1.90644 1.55267 1.45157 1.50197 1.21718 0.98965 0.94829 0.96097 1.21718 0.88866 0.95951 1.00597 1.22501 0.96933 0.96216 1.00246 1.22056 0.96581 0.97666 0.99379 1.22100 0.98005 0.95785 1.00080 1.22713 0.95731 1.00612 0.98022 1.22796 0.96897 0.99977 0.96625 1.22210 0.98542 1.02110 0.80264 1.46188 1.36756 1.45308 1.10505 1.20275 0.79417 0.79125 0.88913 1.90691 1.62236 1.65597 1.20025 0.92212 0.95567 0.95870 0.77226 0.89329 0.91691 0.91764 0.92124 0.92202 0.92328 0.92243 0.90308 0.89060 0.88373 0.88716 0.90128 0.89447 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.54 -14.77 9.83 -34.44 -0.34 -15.11 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 9 C 0.22 5.39 4.50 -5.19 -0.02 5.36 16 10 N -0.70 -14.30 5.35 -61.47 -0.33 -14.63 16 11 C 0.52 10.05 6.22 -10.98 -0.07 9.98 16 12 O -0.54 -11.91 14.28 5.55 0.08 -11.83 16 13 C -0.11 -1.59 0.41 -155.67 -0.06 -1.65 16 14 C -0.05 -0.72 1.95 -88.64 -0.17 -0.90 16 15 C -0.12 -1.37 5.42 -25.07 -0.14 -1.51 16 16 C -0.12 -1.30 6.80 -25.62 -0.17 -1.47 16 17 C -0.12 -1.55 6.80 -25.62 -0.17 -1.72 16 18 C -0.13 -2.11 5.24 -25.09 -0.13 -2.24 16 19 C -0.12 -1.28 6.02 -25.09 -0.15 -1.43 16 20 C 0.09 0.85 6.98 -3.12 -0.02 0.83 16 21 N -0.73 -8.18 6.24 -59.19 -0.37 -8.55 16 22 C 0.54 8.12 5.17 -10.86 -0.06 8.07 16 23 O -0.51 -9.42 15.04 5.56 0.08 -9.34 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 26 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 27 H 0.39 7.19 5.90 -40.82 -0.24 6.95 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.81 6.38 -51.92 -0.33 0.48 16 30 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.40 6.81 -51.93 -0.35 1.05 16 36 H 0.09 1.66 5.27 -51.93 -0.27 1.39 16 37 H 0.10 1.01 7.89 -51.93 -0.41 0.60 16 38 H 0.09 0.75 6.78 -51.93 -0.35 0.40 16 39 H 0.08 0.79 6.91 -51.93 -0.36 0.43 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.41 3.87 8.96 -40.82 -0.37 3.50 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -33.08 316.15 -7.24 -40.32 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.96 Total: 7.68 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.61 Total: 0.33 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.08 Total: -48.57 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.16 Total: -21.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.08 -7.24 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331557975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.371 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds