Wall clock time and date at job start Tue Mar 31 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52994 * 110.43588 * 181.84180 * 13 11 10 15 15 C 1.54896 * 110.75549 * 172.62872 * 14 13 11 16 16 C 1.54266 * 104.19359 * 203.74681 * 15 14 13 17 17 C 1.53866 * 106.60225 * 23.60974 * 16 15 14 18 18 C 1.54268 * 106.59827 * 359.97438 * 17 16 15 19 19 C 1.54632 * 110.48212 * 59.30131 * 13 11 10 20 20 C 1.54486 * 101.76267 * 266.12070 * 19 13 11 21 21 N 1.46765 * 105.47342 * 334.58580 * 20 19 13 22 22 C 1.34419 * 111.30280 * 17.01646 * 21 20 19 23 23 O 1.21279 * 124.94196 * 179.62702 * 22 21 20 24 24 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 26 26 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 27 27 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 28 28 H 1.08998 * 110.67630 * 296.06454 * 14 13 11 29 29 H 1.09007 * 110.48198 * 322.42423 * 15 14 13 30 30 H 1.08998 * 110.48766 * 85.06402 * 15 14 13 31 31 H 1.09003 * 110.02459 * 264.32051 * 16 15 14 32 32 H 1.08999 * 110.07199 * 142.91833 * 16 15 14 33 33 H 1.09003 * 110.02892 * 240.71799 * 17 16 15 34 34 H 1.08993 * 110.07653 * 119.31006 * 17 16 15 35 35 H 1.09003 * 110.48490 * 217.71186 * 18 17 16 36 36 H 1.08997 * 110.59988 * 95.12788 * 18 17 16 37 37 H 1.08997 * 110.97057 * 24.24050 * 19 13 11 38 38 H 1.09005 * 110.96833 * 147.97061 * 19 13 11 39 39 H 1.09001 * 110.24575 * 93.59017 * 20 19 13 40 40 H 1.09005 * 110.24275 * 215.49793 * 20 19 13 41 41 H 0.96998 * 124.34700 * 196.99292 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 6 7.3565 -4.2684 0.0265 15 6 7.8763 -5.7164 0.2063 16 6 9.2780 -5.5409 0.8262 17 6 9.2834 -4.1671 1.5191 18 6 7.8850 -3.5553 1.2955 19 6 5.3054 -4.9954 -1.2590 20 6 4.0283 -5.6679 -0.7083 21 7 4.2502 -5.8062 0.7359 22 6 5.2512 -5.0127 1.1544 23 8 5.6369 -4.9273 2.3010 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.3695 -3.3126 -0.0010 28 1 7.7727 -3.8145 -0.8728 29 1 7.2273 -6.2735 0.8821 30 1 7.9459 -6.2193 -0.7582 31 1 10.0377 -5.5682 0.0450 32 1 9.4654 -6.3281 1.5565 33 1 10.0458 -3.5275 1.0741 34 1 9.4729 -4.2867 2.5857 35 1 7.9611 -2.4812 1.1263 36 1 7.2358 -3.7613 2.1465 37 1 5.0644 -4.2998 -2.0627 38 1 6.0261 -5.7413 -1.5942 39 1 3.1588 -5.0385 -0.8978 40 1 3.8908 -6.6478 -1.1657 41 1 3.7398 -6.3944 1.3142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331557975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:58 Heat of formation + Delta-G solvation = -110.251324 kcal Electronic energy + Delta-G solvation = -23333.377631 eV Core-core repulsion = 20018.241044 eV Total energy + Delta-G solvation = -3315.136587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.64785 -39.90136 -38.50066 -37.52673 -36.19877 -34.43089 -33.27780 -30.12673 -29.81129 -29.46639 -27.29880 -24.64792 -23.18153 -22.92761 -21.72535 -21.05109 -20.18682 -19.19960 -18.48173 -18.32334 -17.20995 -16.64380 -16.48929 -16.28470 -15.96626 -15.58013 -15.23500 -14.93788 -14.83499 -14.49724 -14.37524 -14.04444 -13.90729 -13.77208 -13.21810 -13.13058 -12.73867 -12.58715 -12.27382 -12.01125 -11.98391 -11.95556 -11.81053 -11.69696 -11.54001 -11.25067 -10.94236 -10.87508 -10.49853 -10.12499 -10.02634 -8.42772 -6.49898 1.24118 1.30151 1.33138 1.45307 1.59104 2.23224 2.26493 2.37546 2.92576 3.21821 3.34529 3.45876 3.76545 3.83470 3.89530 4.03676 4.24668 4.43507 4.59120 4.62482 4.69362 4.72872 4.75603 4.81181 4.83554 4.92323 4.96351 5.02428 5.07000 5.13583 5.20020 5.24009 5.35941 5.43537 5.50070 5.54923 5.75476 5.97229 6.03375 6.48377 6.68929 7.09067 7.15643 7.26257 8.71704 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.005311 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.958225 B = 5270.725446 C = 5915.050104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.031 3.969 3 Si 0.933 3.067 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.703 5.703 11 C 0.518 3.482 12 O -0.570 6.570 13 C -0.107 4.107 14 C -0.053 4.053 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.139 4.139 19 C -0.119 4.119 20 C 0.090 3.910 21 N -0.715 5.715 22 C 0.530 3.470 23 O -0.554 6.554 24 H 0.273 0.727 25 H 0.005 0.995 26 H 0.021 0.979 27 H 0.403 0.597 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.134 0.866 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 -16.469 -4.723 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.108 3.892 10 N -0.353 5.353 11 C 0.304 3.696 12 O -0.449 6.449 13 C -0.114 4.114 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.177 4.177 19 C -0.156 4.156 20 C -0.033 4.033 21 N -0.371 5.371 22 C 0.315 3.685 23 O -0.432 6.432 24 H 0.082 0.918 25 H 0.023 0.977 26 H 0.039 0.961 27 H 0.240 0.760 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 14.113 -15.575 -4.202 21.434 hybrid contribution -0.800 0.831 0.679 1.339 sum 13.313 -14.744 -3.523 20.175 Atomic orbital electron populations 1.69964 1.07555 1.28644 1.50409 1.25532 0.95505 1.02439 0.93476 0.85920 0.79102 0.79564 0.79708 1.18350 1.19840 1.19080 1.21208 0.89603 0.94615 1.52982 0.92203 1.19151 0.93709 0.80631 0.95745 1.46133 1.06403 1.09920 1.72864 1.20487 0.82286 0.90857 0.76011 1.90626 1.55918 1.47043 1.51346 1.21707 0.99520 0.91644 0.98484 1.21784 0.88349 0.97737 0.99387 1.22470 0.96540 0.94082 1.01826 1.22075 0.97051 0.96214 1.00032 1.22096 0.96082 0.97250 1.00421 1.22637 0.97514 0.99180 0.98347 1.22952 0.97987 1.00256 0.94445 1.22481 0.97602 1.04482 0.78765 1.46187 1.35145 1.43948 1.11813 1.20418 0.80152 0.79603 0.88335 1.90675 1.63796 1.67108 1.21599 0.91767 0.97739 0.96135 0.76041 0.88940 0.92745 0.88278 0.89871 0.91393 0.91488 0.92584 0.93526 0.91933 0.88228 0.85152 0.90824 0.84765 0.73583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 2 C 0.03 1.77 5.47 84.66 0.46 2.23 16 3 Si 0.93 44.17 27.47 68.60 1.88 46.05 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.77 6.54 99.48 0.65 -12.12 16 7 C -0.55 -30.10 9.83 25.60 0.25 -29.85 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.52 4.50 85.63 0.38 11.91 16 10 N -0.70 -28.93 5.35 -466.79 -2.50 -31.43 16 11 C 0.52 20.12 6.22 87.66 0.55 20.66 16 12 O -0.57 -26.12 14.28 -3.04 -0.04 -26.17 16 13 C -0.11 -2.98 0.41 -52.93 -0.02 -3.00 16 14 C -0.05 -1.41 1.95 -9.51 -0.02 -1.43 16 15 C -0.11 -2.18 5.42 31.67 0.17 -2.01 16 16 C -0.12 -2.21 6.80 31.32 0.21 -1.99 16 17 C -0.12 -2.99 6.80 31.32 0.21 -2.78 16 18 C -0.14 -4.54 5.24 31.66 0.17 -4.37 16 19 C -0.12 -2.03 6.02 31.66 0.19 -1.84 16 20 C 0.09 1.32 6.98 86.83 0.61 1.92 16 21 N -0.72 -14.47 6.24 -459.78 -2.87 -17.34 16 22 C 0.53 15.61 5.17 87.90 0.45 16.07 16 23 O -0.55 -20.84 15.04 -3.03 -0.05 -20.88 16 24 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 25 H 0.00 0.25 7.20 -2.38 -0.02 0.24 16 26 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 27 H 0.40 14.73 5.90 -92.71 -0.55 14.19 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.21 6.38 -2.38 -0.02 1.19 16 30 H 0.10 1.27 7.56 -2.39 -0.02 1.25 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.76 6.81 -2.39 -0.02 1.74 16 36 H 0.06 2.41 5.27 -2.39 -0.01 2.39 16 37 H 0.10 1.75 7.89 -2.39 -0.02 1.73 16 38 H 0.13 1.36 6.78 -2.38 -0.02 1.34 16 39 H 0.07 1.24 6.91 -2.39 -0.02 1.23 16 40 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.42 7.03 8.96 -92.71 -0.83 6.20 16 Total: -1.00 -74.92 316.15 -0.02 -74.95 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.37 Total: 23.86 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.62 Total: 5.51 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -5.07 Total: -103.32 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.09 Total: -47.05 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -74.92 -0.02 -74.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331557975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.304 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds