Wall clock time and date at job start Tue Mar 31 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47022 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47064 * 59.99784 * 3 2 1 7 7 C 1.37879 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99830 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00096 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99872 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.53001 * 110.43268 * 180.02562 * 13 11 10 15 15 C 1.54268 * 110.49168 * 300.70686 * 14 13 11 16 16 C 1.53869 * 106.60115 * 142.28754 * 15 14 13 17 17 C 1.54270 * 106.63967 * 359.97438 * 16 15 14 18 18 C 1.54895 * 110.48589 * 55.48337 * 14 13 11 19 19 C 1.54623 * 110.49154 * 302.54581 * 13 11 10 20 20 C 1.54689 * 101.66698 * 94.09157 * 19 13 11 21 21 N 1.46762 * 105.53715 * 25.26431 * 20 19 13 22 22 C 1.34427 * 111.29565 * 343.07168 * 21 20 19 23 23 O 1.21281 * 124.94024 * 180.37125 * 22 21 20 24 24 H 0.96997 * 120.00656 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47247 * 59.99697 * 9 7 2 26 26 H 1.09004 * 109.47377 * 299.99610 * 9 7 2 27 27 H 0.96993 * 120.00034 * 0.02562 * 10 9 7 28 28 H 1.09001 * 110.53929 * 178.09258 * 14 13 11 29 29 H 1.08999 * 110.03048 * 23.00037 * 15 14 13 30 30 H 1.08996 * 110.03060 * 261.57626 * 15 14 13 31 31 H 1.09002 * 110.03268 * 119.28653 * 16 15 14 32 32 H 1.08995 * 110.03391 * 240.66959 * 16 15 14 33 33 H 1.08997 * 110.48585 * 95.09409 * 17 16 15 34 34 H 1.09002 * 110.48442 * 217.73292 * 17 16 15 35 35 H 1.09001 * 110.75082 * 321.68881 * 18 14 13 36 36 H 1.08998 * 110.75665 * 85.05886 * 18 14 13 37 37 H 1.09001 * 110.97113 * 212.13192 * 19 13 11 38 38 H 1.09005 * 110.96538 * 335.89437 * 19 13 11 39 39 H 1.08998 * 110.13940 * 266.27796 * 20 19 13 40 40 H 1.09008 * 110.29506 * 144.32290 * 20 19 13 41 41 H 0.96998 * 124.35314 * 163.05669 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0005 14 6 1.9907 -7.3664 0.0006 15 6 1.0839 -7.4806 1.2434 16 6 -0.2009 -8.1932 0.7862 17 6 -0.0314 -8.4871 -0.7187 18 6 1.0082 -7.4411 -1.1946 19 6 3.6763 -5.9339 -1.2212 20 6 4.8862 -5.1770 -0.6244 21 7 4.8567 -5.4613 0.8151 22 6 3.6574 -5.9356 1.1945 23 8 3.3600 -6.2446 2.3290 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0009 28 1 2.6970 -8.1959 -0.0338 29 1 0.8449 -6.4875 1.6237 30 1 1.5814 -8.0669 2.0159 31 1 -0.3270 -9.1254 1.3369 32 1 -1.0635 -7.5463 0.9454 33 1 0.3479 -9.4977 -0.8697 34 1 -0.9775 -8.3516 -1.2428 35 1 0.5330 -6.4751 -1.3649 36 1 1.5191 -7.7854 -2.0937 37 1 3.9687 -6.9257 -1.5662 38 1 3.2149 -5.3626 -2.0267 39 1 4.7826 -4.1062 -0.7997 40 1 5.8148 -5.5435 -1.0622 41 1 5.6061 -5.3248 1.4155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331557976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:01 Heat of formation + Delta-G solvation = -84.559980 kcal Electronic energy + Delta-G solvation = -23396.675333 eV Core-core repulsion = 20082.652806 eV Total energy + Delta-G solvation = -3314.022527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35013 -38.46640 -37.12412 -36.30283 -34.18142 -32.45729 -31.99751 -28.81898 -28.24052 -27.57820 -25.96627 -23.23729 -22.11857 -21.23081 -20.44636 -19.88103 -19.01947 -17.58668 -17.09229 -16.16157 -15.78013 -15.12886 -14.91857 -14.80310 -14.50677 -14.32754 -13.80405 -13.57538 -13.45662 -13.08705 -12.74298 -12.63951 -12.30133 -12.08096 -11.74326 -11.49973 -11.08050 -11.00262 -10.95136 -10.85854 -10.67876 -10.57419 -10.41179 -10.31196 -9.98707 -9.60233 -9.42619 -9.16572 -8.84395 -8.76428 -7.93516 -6.20508 -4.27726 2.55433 3.07621 3.20606 3.27716 3.30293 3.37622 3.93697 4.28914 4.32987 4.41765 4.62803 4.82621 5.02706 5.07854 5.09418 5.15959 5.30831 5.40682 5.57600 5.68627 5.72294 5.85282 5.90732 5.92219 5.97426 6.04706 6.21674 6.29586 6.43877 6.67354 6.72588 6.78815 6.87921 6.94833 7.24703 7.35767 7.46863 7.59985 7.92055 8.24752 8.52429 8.71537 8.98455 9.38790 10.89644 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.005469 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.655230 B = 5118.617761 C = 5847.306341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.709 5.709 11 C 0.521 3.479 12 O -0.524 6.524 13 C -0.111 4.111 14 C -0.053 4.053 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.122 4.122 20 C 0.094 3.906 21 N -0.732 5.732 22 C 0.534 3.466 23 O -0.513 6.513 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.387 0.613 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 -13.986 -4.032 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.358 5.358 11 C 0.304 3.696 12 O -0.402 6.402 13 C -0.118 4.118 14 C -0.072 4.072 15 C -0.146 4.146 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.031 4.031 21 N -0.389 5.389 22 C 0.318 3.682 23 O -0.387 6.387 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.220 0.780 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.069 -14.156 -3.486 16.662 hybrid contribution 1.374 1.201 0.241 1.840 sum 9.442 -12.955 -3.245 16.356 Atomic orbital electron populations 1.69975 1.06089 1.27259 1.48772 1.24939 0.94904 0.99425 0.94631 0.86372 0.79794 0.82998 0.77812 1.19670 1.20738 1.20763 1.21212 0.93169 0.90419 1.53377 0.92031 1.19156 0.88232 0.81778 0.97918 1.46598 1.11147 1.06031 1.71997 1.19520 0.88675 0.83365 0.78087 1.90627 1.15920 1.83896 1.49728 1.21744 0.95995 0.98457 0.95625 1.21624 0.96294 0.91739 0.97536 1.22121 0.94364 1.02119 0.96011 1.22039 0.98765 0.99253 0.95408 1.22249 0.99012 0.97984 0.96218 1.22856 0.96182 1.01834 0.95568 1.22787 0.93948 1.02449 0.96835 1.22236 0.99699 1.00829 0.80312 1.46172 1.14961 1.67087 1.10695 1.20398 0.82697 0.75937 0.89131 1.90747 1.77617 1.48995 1.21334 0.92442 0.95225 0.95408 0.77961 0.90842 0.90232 0.92588 0.92989 0.91731 0.92642 0.92033 0.88158 0.92703 0.88974 0.88347 0.90337 0.89594 0.74909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 10 N -0.71 -14.70 5.35 -61.47 -0.33 -15.03 16 11 C 0.52 10.19 5.51 -10.99 -0.06 10.13 16 12 O -0.52 -11.78 11.91 5.55 0.07 -11.71 16 13 C -0.11 -1.66 0.31 -155.68 -0.05 -1.71 16 14 C -0.05 -0.76 2.11 -88.96 -0.19 -0.95 16 15 C -0.11 -1.80 4.30 -25.62 -0.11 -1.91 16 16 C -0.12 -1.71 6.80 -25.61 -0.17 -1.89 16 17 C -0.12 -1.53 6.84 -25.03 -0.17 -1.70 16 18 C -0.13 -1.77 5.59 -24.70 -0.14 -1.91 16 19 C -0.12 -1.29 5.77 -24.99 -0.14 -1.43 16 20 C 0.09 0.86 6.99 -3.01 -0.02 0.84 16 21 N -0.73 -8.39 6.24 -59.09 -0.37 -8.76 16 22 C 0.53 8.39 6.90 -10.86 -0.07 8.32 16 23 O -0.51 -9.90 16.27 5.56 0.09 -9.81 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.39 7.06 5.87 -40.82 -0.24 6.82 16 28 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.08 1.61 5.89 -51.93 -0.31 1.30 16 30 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.72 5.31 -51.93 -0.28 1.44 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.76 7.91 -51.93 -0.41 0.35 16 38 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 39 H 0.08 0.75 6.83 -51.93 -0.35 0.40 16 40 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.41 3.92 8.96 -40.82 -0.37 3.55 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -32.61 320.92 -7.67 -40.28 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.11 Total: 8.54 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.57 Total: 1.10 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.04 Total: -48.78 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.16 Total: -21.53 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.61 -7.67 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331557976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.277 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds