Wall clock time and date at job start Tue Mar 31 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42897 * 110.63827 * 61.97020 * 9 7 2 11 11 C 1.55158 * 110.71945 * 185.30274 * 9 7 2 12 12 C 1.54917 * 101.58179 * 153.86991 * 11 9 7 13 13 N 1.47419 * 104.83035 * 322.99246 * 12 11 9 14 14 C 1.34779 * 125.64899 * 204.16605 * 13 12 11 15 15 O 1.21589 * 120.00063 * 179.97438 * 14 13 12 16 16 N 1.34773 * 119.99755 * 359.95628 * 14 13 12 17 17 C 1.46504 * 120.00024 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.35589 * 35.27626 * 17 16 14 19 19 C 1.50075 * 109.35655 * 275.68936 * 17 16 14 20 20 C 1.29439 * 124.07164 * 222.65941 * 19 17 16 21 21 C 1.50071 * 124.07674 * 0.47161 * 20 19 17 22 22 C 1.53017 * 110.14666 * 342.86630 * 21 20 19 23 23 C 1.53019 * 109.35693 * 154.99921 * 17 16 14 24 24 C 1.47022 * 108.70662 * 24.12431 * 13 12 11 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 0.96697 * 114.00521 * 300.69673 * 10 9 7 27 27 H 1.09004 * 111.00446 * 271.94224 * 11 9 7 28 28 H 1.08994 * 111.00730 * 35.79576 * 11 9 7 29 29 H 1.09002 * 110.36497 * 204.15246 * 12 11 9 30 30 H 1.09000 * 110.36344 * 81.83078 * 12 11 9 31 31 H 0.97001 * 119.99978 * 0.02562 * 16 14 13 32 32 H 1.07994 * 117.96278 * 42.63838 * 19 17 16 33 33 H 1.08006 * 117.95908 * 180.49090 * 20 19 17 34 34 H 1.09003 * 109.35555 * 222.65661 * 21 20 19 35 35 H 1.08999 * 109.24407 * 103.00807 * 21 20 19 36 36 H 1.08994 * 109.64756 * 289.74978 * 22 21 20 37 37 H 1.09007 * 109.81449 * 169.22022 * 22 21 20 38 38 H 1.08997 * 109.64376 * 289.32646 * 23 17 16 39 39 H 1.08996 * 109.64376 * 49.74906 * 23 17 16 40 40 H 1.09001 * 109.89039 * 239.52346 * 24 13 12 41 41 H 1.09005 * 109.88030 * 118.35516 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4500 -2.6235 -1.1713 11 6 2.2287 -3.6967 0.1377 12 6 1.3210 -4.7683 0.7917 13 7 0.4650 -4.0173 1.7280 14 6 -0.1396 -4.5259 2.8199 15 8 -0.8256 -3.8101 3.5238 16 7 0.0159 -5.8279 3.1313 17 6 -0.6418 -6.3809 4.3179 18 1 -1.6102 -5.8989 4.4518 19 6 0.2109 -6.1219 5.5253 20 6 0.4319 -6.9925 6.4573 21 6 -0.1254 -8.3859 6.4556 22 6 -1.2909 -8.4861 5.4692 23 6 -0.8459 -7.8857 4.1297 24 6 0.3809 -2.6215 1.2739 25 1 -0.4850 0.8400 0.0004 26 1 -0.2040 -1.9193 -1.2783 27 1 2.5786 -4.0254 -0.8409 28 1 3.0676 -3.4463 0.7870 29 1 1.9243 -5.4983 1.3314 30 1 0.7124 -5.2630 0.0348 31 1 0.5632 -6.3989 2.5697 32 1 0.6689 -5.1487 5.6225 33 1 1.0560 -6.6977 7.2880 34 1 -0.4767 -8.6357 7.4567 35 1 0.6573 -9.0856 6.1624 36 1 -2.1456 -7.9300 5.8541 37 1 -1.5671 -9.5312 5.3285 38 1 -1.6145 -8.0599 3.3767 39 1 0.0897 -8.3454 3.8113 40 1 0.7601 -1.9558 2.0493 41 1 -0.6535 -2.3697 1.0395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332092325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:54 Heat of formation + Delta-G solvation = -68.572606 kcal Electronic energy + Delta-G solvation = -22457.415830 eV Core-core repulsion = 19144.086568 eV Total energy + Delta-G solvation = -3313.329262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92439 -38.48593 -37.10255 -34.24723 -33.80686 -32.20882 -31.16029 -30.26698 -28.91822 -27.64924 -25.04664 -23.22399 -22.47681 -22.22815 -19.66476 -19.37759 -18.17574 -17.47458 -17.04293 -16.46431 -15.61607 -15.28904 -14.89142 -14.48258 -14.31185 -13.75036 -13.66205 -13.03170 -13.00938 -12.86248 -12.82325 -12.66844 -12.44644 -12.03517 -11.65873 -11.44443 -11.31545 -11.03416 -10.81612 -10.77704 -10.64939 -10.48257 -10.46957 -10.15858 -9.59119 -9.29397 -9.09926 -8.82256 -8.66516 -8.30384 -7.73733 -6.26595 -4.35530 2.19252 3.20414 3.25651 3.30359 3.32908 3.75968 4.27876 4.44460 4.59131 4.62400 4.82723 5.01089 5.04641 5.25499 5.35310 5.39788 5.40445 5.49013 5.68772 5.69656 5.72369 5.78584 5.85444 6.02013 6.05667 6.15347 6.18098 6.52669 6.55967 6.72456 6.73870 6.91642 6.97359 7.02169 7.29487 7.34861 7.67723 7.74899 8.04877 8.55871 8.68726 9.16247 9.31191 9.39824 10.81048 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003860 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.358754 B = 7251.596085 C = 7540.272124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.194 3.806 18 H 0.095 0.905 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.090 4.090 22 C -0.116 4.116 23 C -0.125 4.125 24 C 0.124 3.876 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.393 0.607 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 -16.022 7.605 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.089 3.911 18 H 0.112 0.888 19 C -0.170 4.170 20 C -0.180 4.180 21 C -0.127 4.127 22 C -0.154 4.154 23 C -0.163 4.163 24 C 0.002 3.998 25 H 0.080 0.920 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.075 -15.886 8.088 17.827 hybrid contribution 0.432 1.299 -0.055 1.370 sum 0.507 -14.588 8.033 16.661 Atomic orbital electron populations 1.69698 1.05972 1.27921 1.49588 1.25076 0.95052 0.99759 0.93405 0.86407 0.79800 0.82480 0.78246 1.20394 1.20998 1.19729 1.21500 0.93666 0.90113 1.52404 0.91560 1.19500 0.86520 0.91997 0.81274 1.86089 1.53776 1.54261 1.45301 1.22722 0.97397 0.95195 1.00071 1.22230 0.92700 0.95095 0.91984 1.47975 1.50720 1.13164 1.24889 1.15551 0.80336 0.81657 0.80781 1.90884 1.44749 1.59049 1.52831 1.45207 1.55975 1.09444 1.29507 1.19515 0.95944 0.92952 0.82719 0.88752 1.22582 0.99198 0.99540 0.95704 1.22010 1.01336 0.95316 0.99315 1.20458 0.97620 0.94979 0.99649 1.21569 0.98283 1.00934 0.94652 1.21854 1.02191 0.94113 0.98170 1.22836 1.01448 0.77378 0.98154 0.91987 0.76698 0.90624 0.90539 0.92671 0.92030 0.77325 0.87615 0.88023 0.91165 0.91010 0.91354 0.91260 0.90945 0.91230 0.91842 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 10.95 55.43 0.61 -23.39 16 2 C 0.07 1.85 5.26 -17.82 -0.09 1.76 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.14 8.12 -34.44 -0.28 -14.42 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 6.00 0.86 -89.94 -0.08 5.93 16 10 O -0.59 -14.71 13.09 -35.23 -0.46 -15.17 16 11 C -0.12 -2.30 6.23 -24.58 -0.15 -2.45 16 12 C 0.10 1.81 6.57 -2.53 -0.02 1.79 16 13 N -0.63 -13.23 3.33 -176.23 -0.59 -13.82 16 14 C 0.71 14.69 8.43 -86.92 -0.73 13.96 16 15 O -0.60 -14.60 16.33 5.29 0.09 -14.51 16 16 N -0.75 -11.39 5.01 -60.10 -0.30 -11.70 16 17 C 0.19 2.60 2.70 -69.37 -0.19 2.42 16 18 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 19 C -0.15 -2.01 9.32 -35.90 -0.33 -2.34 16 20 C -0.16 -1.72 9.80 -35.90 -0.35 -2.08 16 21 C -0.09 -0.75 6.12 -28.18 -0.17 -0.92 16 22 C -0.12 -0.96 6.01 -26.52 -0.16 -1.12 16 23 C -0.13 -1.21 5.48 -26.52 -0.15 -1.36 16 24 C 0.12 3.06 5.23 -3.06 -0.02 3.04 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 26 H 0.38 9.87 7.43 45.56 0.34 10.21 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 29 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.39 5.03 7.06 -40.82 -0.29 4.74 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.62 8.11 -51.93 -0.42 0.19 16 40 H 0.06 1.72 7.81 -51.93 -0.41 1.32 16 41 H 0.06 1.70 7.93 -51.93 -0.41 1.29 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -30.13 330.14 -9.15 -39.28 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.73 Total: 14.56 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.72 Total: 4.21 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.28 Total: -48.90 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.37 Total: -29.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.13 -9.15 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.296 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds