Wall clock time and date at job start Tue Mar 31 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42897 * 110.63827 * 61.97020 * 9 7 2 11 11 C 1.55158 * 110.71945 * 185.30274 * 9 7 2 12 12 C 1.54917 * 101.58179 * 153.86991 * 11 9 7 13 13 N 1.47419 * 104.83035 * 322.99246 * 12 11 9 14 14 C 1.34779 * 125.64899 * 204.16605 * 13 12 11 15 15 O 1.21589 * 120.00063 * 179.97438 * 14 13 12 16 16 N 1.34773 * 119.99755 * 359.95628 * 14 13 12 17 17 C 1.46504 * 120.00024 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.35589 * 35.27626 * 17 16 14 19 19 C 1.50075 * 109.35655 * 275.68936 * 17 16 14 20 20 C 1.29439 * 124.07164 * 222.65941 * 19 17 16 21 21 C 1.50071 * 124.07674 * 0.47161 * 20 19 17 22 22 C 1.53017 * 110.14666 * 342.86630 * 21 20 19 23 23 C 1.53019 * 109.35693 * 154.99921 * 17 16 14 24 24 C 1.47022 * 108.70662 * 24.12431 * 13 12 11 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 0.96697 * 114.00521 * 300.69673 * 10 9 7 27 27 H 1.09004 * 111.00446 * 271.94224 * 11 9 7 28 28 H 1.08994 * 111.00730 * 35.79576 * 11 9 7 29 29 H 1.09002 * 110.36497 * 204.15246 * 12 11 9 30 30 H 1.09000 * 110.36344 * 81.83078 * 12 11 9 31 31 H 0.97001 * 119.99978 * 0.02562 * 16 14 13 32 32 H 1.07994 * 117.96278 * 42.63838 * 19 17 16 33 33 H 1.08006 * 117.95908 * 180.49090 * 20 19 17 34 34 H 1.09003 * 109.35555 * 222.65661 * 21 20 19 35 35 H 1.08999 * 109.24407 * 103.00807 * 21 20 19 36 36 H 1.08994 * 109.64756 * 289.74978 * 22 21 20 37 37 H 1.09007 * 109.81449 * 169.22022 * 22 21 20 38 38 H 1.08997 * 109.64376 * 289.32646 * 23 17 16 39 39 H 1.08996 * 109.64376 * 49.74906 * 23 17 16 40 40 H 1.09001 * 109.89039 * 239.52346 * 24 13 12 41 41 H 1.09005 * 109.88030 * 118.35516 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4500 -2.6235 -1.1713 11 6 2.2287 -3.6967 0.1377 12 6 1.3210 -4.7683 0.7917 13 7 0.4650 -4.0173 1.7280 14 6 -0.1396 -4.5259 2.8199 15 8 -0.8256 -3.8101 3.5238 16 7 0.0159 -5.8279 3.1313 17 6 -0.6418 -6.3809 4.3179 18 1 -1.6102 -5.8989 4.4518 19 6 0.2109 -6.1219 5.5253 20 6 0.4319 -6.9925 6.4573 21 6 -0.1254 -8.3859 6.4556 22 6 -1.2909 -8.4861 5.4692 23 6 -0.8459 -7.8857 4.1297 24 6 0.3809 -2.6215 1.2739 25 1 -0.4850 0.8400 0.0004 26 1 -0.2040 -1.9193 -1.2783 27 1 2.5786 -4.0254 -0.8409 28 1 3.0676 -3.4463 0.7870 29 1 1.9243 -5.4983 1.3314 30 1 0.7124 -5.2630 0.0348 31 1 0.5632 -6.3989 2.5697 32 1 0.6689 -5.1487 5.6225 33 1 1.0560 -6.6977 7.2880 34 1 -0.4767 -8.6357 7.4567 35 1 0.6573 -9.0856 6.1624 36 1 -2.1456 -7.9300 5.8541 37 1 -1.5671 -9.5312 5.3285 38 1 -1.6145 -8.0599 3.3767 39 1 0.0897 -8.3454 3.8113 40 1 0.7601 -1.9558 2.0493 41 1 -0.6535 -2.3697 1.0395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332092325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:54 Heat of formation + Delta-G solvation = -90.015379 kcal Electronic energy + Delta-G solvation = -22458.345659 eV Core-core repulsion = 19144.086568 eV Total energy + Delta-G solvation = -3314.259091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42436 -39.75700 -38.66704 -36.08553 -35.11668 -34.23858 -31.99090 -31.86034 -30.15924 -29.38100 -26.91173 -24.59443 -23.51611 -23.28513 -21.46531 -20.93499 -19.44039 -19.01459 -18.62713 -17.71524 -17.13016 -16.80893 -16.59932 -16.18035 -15.65963 -15.07388 -14.79087 -14.75435 -14.58823 -14.28974 -13.88412 -13.69640 -13.52964 -13.48870 -13.31872 -13.19819 -12.84879 -12.55340 -12.34317 -12.29467 -12.12763 -12.05190 -11.55967 -11.37080 -11.26433 -11.16864 -10.66133 -10.30685 -10.23055 -10.01235 -9.42168 -8.27192 -6.43620 1.18889 1.40606 1.42425 1.52126 1.79472 2.12961 2.37148 2.99519 3.08225 3.72672 3.78794 3.81152 4.05314 4.07752 4.16356 4.23253 4.36391 4.43114 4.49978 4.59123 4.63355 4.71771 4.74883 4.92561 5.04128 5.05229 5.12316 5.14391 5.23520 5.32185 5.35402 5.38682 5.48953 5.51974 5.69077 5.73735 5.96434 6.02672 6.18923 6.63586 7.05799 7.26497 7.33923 7.56526 8.78814 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003860 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.358754 B = 7251.596085 C = 7540.272124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.586 6.586 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.636 5.636 14 C 0.709 3.291 15 O -0.645 6.645 16 N -0.722 5.722 17 C 0.192 3.808 18 H 0.063 0.937 19 C -0.187 4.187 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.117 4.117 24 C 0.143 3.857 25 H 0.270 0.730 26 H 0.375 0.625 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -19.063 8.016 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.373 5.373 14 C 0.411 3.589 15 O -0.528 6.528 16 N -0.378 5.378 17 C 0.088 3.912 18 H 0.081 0.919 19 C -0.207 4.207 20 C -0.149 4.149 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.155 4.155 24 C 0.019 3.981 25 H 0.079 0.921 26 H 0.224 0.776 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.520 -19.006 8.490 20.871 hybrid contribution -0.018 2.201 -0.092 2.203 sum 1.501 -16.805 8.397 18.846 Atomic orbital electron populations 1.69813 1.07159 1.28467 1.50089 1.25838 0.95798 1.02903 0.93087 0.85464 0.78618 0.78601 0.78426 1.19587 1.21219 1.19167 1.21851 0.93980 0.91383 1.52486 0.91389 1.19704 0.87016 0.93591 0.80403 1.86077 1.53694 1.53882 1.45755 1.22719 0.96856 0.93775 1.01449 1.22410 0.92314 0.94771 0.91920 1.47917 1.51565 1.12121 1.25706 1.15806 0.79870 0.83018 0.80214 1.90842 1.46834 1.60768 1.54356 1.45060 1.55348 1.07375 1.30036 1.19678 0.94240 0.95306 0.81978 0.91932 1.22310 1.01829 0.99000 0.97561 1.22340 0.98903 0.96051 0.97628 1.20580 0.98129 0.93150 1.00880 1.21609 0.97933 1.02229 0.93516 1.21855 1.03365 0.90738 0.99510 1.22315 0.99035 0.79194 0.97527 0.92103 0.77558 0.88918 0.89962 0.88128 0.90901 0.75399 0.91241 0.87138 0.89253 0.88867 0.92275 0.88503 0.90369 0.89429 0.95555 0.95583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 10.95 21.45 0.23 -50.81 16 2 C 0.02 1.32 5.26 84.65 0.45 1.76 16 3 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.56 -29.77 8.12 25.60 0.21 -29.56 16 8 H 0.07 3.51 7.78 -2.91 -0.02 3.48 16 9 C 0.23 11.48 0.86 -10.35 -0.01 11.47 16 10 O -0.59 -29.92 13.09 -148.98 -1.95 -31.87 16 11 C -0.11 -4.20 6.23 31.99 0.20 -4.00 16 12 C 0.11 3.54 6.57 86.86 0.57 4.11 16 13 N -0.64 -27.04 3.33 -829.74 -2.76 -29.80 16 14 C 0.71 29.91 8.43 179.05 1.51 31.42 16 15 O -0.65 -33.52 16.33 -4.00 -0.07 -33.58 16 16 N -0.72 -21.62 5.01 -462.33 -2.32 -23.94 16 17 C 0.19 5.11 2.70 44.05 0.12 5.23 16 18 H 0.06 2.04 7.58 -2.39 -0.02 2.03 16 19 C -0.19 -4.98 9.32 27.04 0.25 -4.73 16 20 C -0.13 -2.53 9.80 27.04 0.27 -2.26 16 21 C -0.09 -1.14 6.12 29.66 0.18 -0.96 16 22 C -0.11 -1.49 6.01 30.73 0.18 -1.31 16 23 C -0.12 -1.93 5.48 30.73 0.17 -1.76 16 24 C 0.14 7.42 5.23 86.73 0.45 7.87 16 25 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.38 20.11 7.43 -74.06 -0.55 19.56 16 27 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 28 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 29 H 0.10 2.42 7.30 -2.39 -0.02 2.41 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 31 H 0.41 9.43 7.06 -92.71 -0.65 8.77 16 32 H 0.07 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 40 H 0.03 1.51 7.81 -2.39 -0.02 1.49 16 41 H 0.03 1.50 7.93 -2.38 -0.02 1.48 16 Total: -1.00 -69.93 330.14 -0.46 -70.38 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.17 Total: 37.60 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 4.55 Total: 17.27 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.84 Total: -104.55 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -2.02 Total: -65.45 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.93 -0.46 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.631 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds