Wall clock time and date at job start Tue Mar 31 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48500 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47149 * 299.99807 * 3 2 1 6 6 H 1.48499 * 109.47167 * 60.00181 * 3 2 1 7 7 C 1.37882 * 119.99336 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99246 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00297 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.88542 * 62.43080 * 9 7 2 11 11 C 1.55157 * 111.00341 * 186.35202 * 9 7 2 12 12 C 1.54334 * 103.02327 * 153.38080 * 11 9 7 13 13 N 1.47023 * 107.26332 * 338.14040 * 12 11 9 14 14 C 1.34781 * 125.65060 * 178.84629 * 13 12 11 15 15 O 1.21589 * 119.99883 * 179.69003 * 14 13 12 16 16 N 1.34778 * 119.99455 * 359.69676 * 14 13 12 17 17 C 1.46503 * 119.99542 * 180.02562 * 16 14 13 18 18 H 1.09005 * 109.24457 * 325.33823 * 17 16 14 19 19 C 1.50059 * 109.35757 * 84.99577 * 17 16 14 20 20 C 1.29452 * 124.07349 * 137.33788 * 19 17 16 21 21 C 1.50070 * 124.07339 * 359.78991 * 20 19 17 22 22 C 1.52871 * 110.23038 * 16.69650 * 21 20 19 23 23 C 1.53022 * 109.35562 * 205.68614 * 17 16 14 24 24 C 1.47430 * 108.70420 * 358.58275 * 13 12 11 25 25 H 0.96998 * 119.99468 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99899 * 297.57193 * 10 9 7 27 27 H 1.09003 * 110.72181 * 271.94322 * 11 9 7 28 28 H 1.09002 * 110.72201 * 35.21232 * 11 9 7 29 29 H 1.09000 * 109.99323 * 218.67023 * 12 11 9 30 30 H 1.08997 * 109.77934 * 97.49074 * 12 11 9 31 31 H 0.97000 * 120.00373 * 359.97438 * 16 14 13 32 32 H 1.08000 * 117.96614 * 317.35602 * 19 17 16 33 33 H 1.08002 * 117.95997 * 179.50355 * 20 19 17 34 34 H 1.09000 * 109.35530 * 137.07589 * 21 20 19 35 35 H 1.08992 * 109.35582 * 256.66432 * 21 20 19 36 36 H 1.08996 * 109.69651 * 191.10179 * 22 21 20 37 37 H 1.08993 * 109.62155 * 70.66349 * 22 21 20 38 38 H 1.09003 * 109.64238 * 310.04233 * 23 17 16 39 39 H 1.09005 * 109.64041 * 70.45823 * 23 17 16 40 40 H 1.08999 * 110.36505 * 143.18965 * 24 13 12 41 41 H 1.08995 * 110.36901 * 265.51746 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4605 -2.6311 -1.1838 11 6 2.2195 -3.7007 0.1591 12 6 1.3301 -4.7802 0.8114 13 7 0.2070 -4.0871 1.4593 14 6 -0.8057 -4.6808 2.1216 15 8 -1.6819 -4.0047 2.6252 16 7 -0.8469 -6.0240 2.2257 17 6 -1.9479 -6.6694 2.9451 18 1 -2.2476 -6.0398 3.7830 19 6 -3.1124 -6.8479 2.0156 20 6 -3.8332 -7.9214 1.9540 21 6 -3.6021 -9.1390 2.8002 22 6 -2.7060 -8.7939 3.9896 23 6 -1.4816 -8.0279 3.4728 24 6 0.3753 -2.6347 1.2702 25 1 -0.4849 0.8401 0.0004 26 1 -0.2254 -1.9558 -1.2759 27 1 2.5843 -4.0337 -0.8126 28 1 3.0500 -3.4420 0.8159 29 1 1.9021 -5.3349 1.5552 30 1 0.9545 -5.4602 0.0467 31 1 -0.1480 -6.5633 1.8238 32 1 -3.3647 -6.0300 1.3570 33 1 -4.6546 -7.9402 1.2530 34 1 -4.5592 -9.5135 3.1633 35 1 -3.1191 -9.9098 2.1998 36 1 -2.3832 -9.7099 4.4844 37 1 -3.2570 -8.1714 4.6945 38 1 -1.0097 -8.5914 2.6678 39 1 -0.7684 -7.8807 4.2839 40 1 -0.5926 -2.1576 1.1165 41 1 0.8831 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332092326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:57 Heat of formation + Delta-G solvation = -68.888671 kcal Electronic energy + Delta-G solvation = -22500.327309 eV Core-core repulsion = 19186.984341 eV Total energy + Delta-G solvation = -3313.342968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89794 -38.46752 -37.06296 -34.19886 -33.77546 -32.20555 -31.14044 -30.31682 -28.90282 -27.64194 -25.04888 -23.21708 -22.45955 -22.16329 -19.64055 -19.38938 -18.14804 -17.47709 -16.99262 -16.43838 -15.57673 -15.12086 -15.01203 -14.48288 -14.32159 -13.82529 -13.65789 -13.09866 -12.96448 -12.89349 -12.78158 -12.64325 -12.37954 -11.99512 -11.63045 -11.42410 -11.29606 -11.03822 -10.80943 -10.76332 -10.57435 -10.46100 -10.44308 -10.16447 -9.58360 -9.34297 -9.07323 -8.79680 -8.67745 -8.32505 -7.65748 -6.25270 -4.35048 2.21970 3.20324 3.26987 3.30666 3.33782 3.78233 4.27691 4.47820 4.60904 4.64357 4.84142 5.01876 5.06475 5.27845 5.37583 5.42100 5.43544 5.50604 5.67187 5.70722 5.71781 5.78580 5.85914 6.03528 6.07056 6.17441 6.20313 6.53507 6.58673 6.72956 6.75604 6.91401 7.00038 7.00782 7.26641 7.35944 7.69557 7.76940 8.06211 8.57939 8.69916 9.18345 9.32583 9.40735 10.81753 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037329 B = 0.003796 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.902441 B = 7373.968541 C = 7561.960978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.629 5.629 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.745 5.745 17 C 0.194 3.806 18 H 0.095 0.905 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.090 4.090 22 C -0.116 4.116 23 C -0.125 4.125 24 C 0.114 3.886 25 H 0.269 0.731 26 H 0.381 0.619 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.393 0.607 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -16.469 4.996 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.401 5.401 17 C 0.089 3.911 18 H 0.113 0.887 19 C -0.170 4.170 20 C -0.180 4.180 21 C -0.127 4.127 22 C -0.154 4.154 23 C -0.163 4.163 24 C -0.008 4.008 25 H 0.079 0.921 26 H 0.231 0.769 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.226 0.774 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.752 -16.357 5.316 17.418 hybrid contribution 0.301 1.211 -0.204 1.264 sum -2.451 -15.146 5.112 16.173 Atomic orbital electron populations 1.69735 1.05974 1.27759 1.49516 1.25088 0.95032 0.99752 0.93388 0.86358 0.80032 0.82810 0.77745 1.19606 1.20783 1.20782 1.21495 0.93646 0.90059 1.52385 0.91511 1.19643 0.86664 0.91545 0.81451 1.86099 1.51512 1.57150 1.44354 1.22588 0.97545 0.95208 1.00022 1.21922 0.88324 0.96069 0.95504 1.47947 1.23302 1.09746 1.55538 1.15557 0.81797 0.81443 0.79431 1.90883 1.39690 1.63276 1.53686 1.45199 1.28343 1.05309 1.61227 1.19515 0.84885 0.93182 0.93561 0.88729 1.22590 0.96739 0.98018 0.99663 1.22005 1.00445 0.94922 1.00624 1.20426 0.99863 0.96390 0.96018 1.21535 0.96020 1.00143 0.97728 1.21854 0.98231 0.95067 1.01154 1.23115 1.02492 0.75696 0.99450 0.92075 0.76938 0.90817 0.90458 0.93173 0.92731 0.77373 0.87560 0.87998 0.91159 0.91052 0.91302 0.91383 0.91260 0.90977 0.89699 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 10.69 55.43 0.59 -23.41 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.02 8.27 -34.44 -0.28 -14.30 16 8 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 9 C 0.25 6.01 0.87 -89.62 -0.08 5.93 16 10 O -0.58 -14.92 13.16 -35.23 -0.46 -15.39 16 11 C -0.12 -2.29 6.13 -24.89 -0.15 -2.44 16 12 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 13 N -0.63 -13.22 3.33 -176.23 -0.59 -13.81 16 14 C 0.72 14.83 8.44 -86.91 -0.73 14.10 16 15 O -0.60 -14.68 16.25 5.29 0.09 -14.60 16 16 N -0.75 -11.57 5.01 -60.10 -0.30 -11.87 16 17 C 0.19 2.64 2.71 -69.38 -0.19 2.45 16 18 H 0.09 1.48 7.55 -51.93 -0.39 1.09 16 19 C -0.15 -2.07 9.33 -35.91 -0.34 -2.40 16 20 C -0.16 -1.79 9.81 -35.90 -0.35 -2.14 16 21 C -0.09 -0.77 6.11 -28.25 -0.17 -0.94 16 22 C -0.12 -0.97 6.00 -26.60 -0.16 -1.13 16 23 C -0.12 -1.22 5.48 -26.52 -0.15 -1.37 16 24 C 0.11 2.80 5.38 -2.52 -0.01 2.79 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.38 10.06 7.56 45.56 0.34 10.40 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 5.15 7.58 -40.82 -0.31 4.84 16 32 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 38 H 0.07 0.63 8.11 -51.93 -0.42 0.20 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 41 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 330.79 15.07 4.99 4.99 Total: -1.00 -30.15 330.79 -9.20 -39.35 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.76 Total: 15.19 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -2.73 Total: 4.14 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.29 Total: -49.09 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.38 Total: -29.98 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.15 -9.20 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.537 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds