Wall clock time and date at job start Tue Mar 31 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48500 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47149 * 299.99807 * 3 2 1 6 6 H 1.48499 * 109.47167 * 60.00181 * 3 2 1 7 7 C 1.37882 * 119.99336 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99246 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00297 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.88542 * 62.43080 * 9 7 2 11 11 C 1.55157 * 111.00341 * 186.35202 * 9 7 2 12 12 C 1.54334 * 103.02327 * 153.38080 * 11 9 7 13 13 N 1.47023 * 107.26332 * 338.14040 * 12 11 9 14 14 C 1.34781 * 125.65060 * 178.84629 * 13 12 11 15 15 O 1.21589 * 119.99883 * 179.69003 * 14 13 12 16 16 N 1.34778 * 119.99455 * 359.69676 * 14 13 12 17 17 C 1.46503 * 119.99542 * 180.02562 * 16 14 13 18 18 H 1.09005 * 109.24457 * 325.33823 * 17 16 14 19 19 C 1.50059 * 109.35757 * 84.99577 * 17 16 14 20 20 C 1.29452 * 124.07349 * 137.33788 * 19 17 16 21 21 C 1.50070 * 124.07339 * 359.78991 * 20 19 17 22 22 C 1.52871 * 110.23038 * 16.69650 * 21 20 19 23 23 C 1.53022 * 109.35562 * 205.68614 * 17 16 14 24 24 C 1.47430 * 108.70420 * 358.58275 * 13 12 11 25 25 H 0.96998 * 119.99468 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99899 * 297.57193 * 10 9 7 27 27 H 1.09003 * 110.72181 * 271.94322 * 11 9 7 28 28 H 1.09002 * 110.72201 * 35.21232 * 11 9 7 29 29 H 1.09000 * 109.99323 * 218.67023 * 12 11 9 30 30 H 1.08997 * 109.77934 * 97.49074 * 12 11 9 31 31 H 0.97000 * 120.00373 * 359.97438 * 16 14 13 32 32 H 1.08000 * 117.96614 * 317.35602 * 19 17 16 33 33 H 1.08002 * 117.95997 * 179.50355 * 20 19 17 34 34 H 1.09000 * 109.35530 * 137.07589 * 21 20 19 35 35 H 1.08992 * 109.35582 * 256.66432 * 21 20 19 36 36 H 1.08996 * 109.69651 * 191.10179 * 22 21 20 37 37 H 1.08993 * 109.62155 * 70.66349 * 22 21 20 38 38 H 1.09003 * 109.64238 * 310.04233 * 23 17 16 39 39 H 1.09005 * 109.64041 * 70.45823 * 23 17 16 40 40 H 1.08999 * 110.36505 * 143.18965 * 24 13 12 41 41 H 1.08995 * 110.36901 * 265.51746 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4605 -2.6311 -1.1838 11 6 2.2195 -3.7007 0.1591 12 6 1.3301 -4.7802 0.8114 13 7 0.2070 -4.0871 1.4593 14 6 -0.8057 -4.6808 2.1216 15 8 -1.6819 -4.0047 2.6252 16 7 -0.8469 -6.0240 2.2257 17 6 -1.9479 -6.6694 2.9451 18 1 -2.2476 -6.0398 3.7830 19 6 -3.1124 -6.8479 2.0156 20 6 -3.8332 -7.9214 1.9540 21 6 -3.6021 -9.1390 2.8002 22 6 -2.7060 -8.7939 3.9896 23 6 -1.4816 -8.0279 3.4728 24 6 0.3753 -2.6347 1.2702 25 1 -0.4849 0.8401 0.0004 26 1 -0.2254 -1.9558 -1.2759 27 1 2.5843 -4.0337 -0.8126 28 1 3.0500 -3.4420 0.8159 29 1 1.9021 -5.3349 1.5552 30 1 0.9545 -5.4602 0.0467 31 1 -0.1480 -6.5633 1.8238 32 1 -3.3647 -6.0300 1.3570 33 1 -4.6546 -7.9402 1.2530 34 1 -4.5592 -9.5135 3.1633 35 1 -3.1191 -9.9098 2.1998 36 1 -2.3832 -9.7099 4.4844 37 1 -3.2570 -8.1714 4.6945 38 1 -1.0097 -8.5914 2.6678 39 1 -0.7684 -7.8807 4.2839 40 1 -0.5926 -2.1576 1.1165 41 1 0.8831 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332092326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:56 Heat of formation + Delta-G solvation = -90.375045 kcal Electronic energy + Delta-G solvation = -22501.259028 eV Core-core repulsion = 19186.984341 eV Total energy + Delta-G solvation = -3314.274687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39691 -39.73917 -38.63599 -36.04094 -35.09949 -34.23500 -31.99597 -31.91307 -30.13157 -29.37021 -26.90598 -24.57698 -23.47167 -23.27897 -21.47723 -20.89972 -19.42760 -19.03615 -18.56138 -17.67461 -17.04721 -16.80244 -16.65020 -16.21286 -15.64912 -15.19817 -14.82052 -14.67634 -14.57034 -14.22594 -13.85110 -13.65484 -13.52169 -13.48988 -13.33143 -13.15283 -12.86198 -12.53315 -12.33872 -12.19920 -12.09087 -12.07643 -11.55552 -11.37443 -11.27219 -11.18291 -10.67496 -10.33401 -10.17897 -10.01394 -9.33862 -8.24478 -6.42070 1.18483 1.41042 1.44014 1.55185 1.81916 2.15561 2.38476 3.01619 3.11654 3.72816 3.79670 3.81200 4.06187 4.09608 4.18694 4.23268 4.33581 4.43210 4.49771 4.62016 4.63575 4.75018 4.76679 4.92630 5.05036 5.06767 5.09945 5.14024 5.28353 5.33713 5.36574 5.40124 5.46634 5.52062 5.68639 5.75944 5.96753 6.05754 6.20874 6.65952 7.07627 7.26916 7.34666 7.58661 8.80888 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037329 B = 0.003796 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.902441 B = 7373.968541 C = 7561.960978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.635 5.635 14 C 0.709 3.291 15 O -0.646 6.646 16 N -0.723 5.723 17 C 0.193 3.807 18 H 0.065 0.935 19 C -0.189 4.189 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.116 4.116 24 C 0.130 3.870 25 H 0.268 0.732 26 H 0.372 0.628 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 -19.512 5.359 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.411 3.589 15 O -0.529 6.529 16 N -0.379 5.379 17 C 0.088 3.912 18 H 0.083 0.917 19 C -0.208 4.208 20 C -0.149 4.149 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.154 4.154 24 C 0.006 3.994 25 H 0.077 0.923 26 H 0.220 0.780 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.401 -19.479 5.668 20.336 hybrid contribution -0.196 2.098 -0.327 2.133 sum -1.598 -17.381 5.341 18.253 Atomic orbital electron populations 1.69868 1.07280 1.28280 1.50157 1.25867 0.95730 1.02976 0.93091 0.85388 0.79223 0.78863 0.77435 1.18565 1.20634 1.20917 1.21838 0.93994 0.91176 1.52297 0.91148 1.19892 0.87200 0.93296 0.80559 1.86090 1.51406 1.56771 1.45194 1.22595 0.97172 0.93686 1.01302 1.22123 0.87133 0.95448 0.96785 1.47895 1.24590 1.08635 1.55999 1.15812 0.81103 0.82916 0.79090 1.90840 1.41494 1.64868 1.55667 1.45057 1.29111 1.03295 1.60398 1.19679 0.84423 0.94697 0.92377 0.91739 1.22331 0.98981 0.98331 1.01198 1.22339 0.98516 0.94707 0.99386 1.20550 1.01245 0.95104 0.95831 1.21577 0.95149 1.00935 0.97600 1.21851 0.99209 0.92528 1.01791 1.22632 0.99893 0.77788 0.99086 0.92258 0.77979 0.89573 0.89179 0.89001 0.91068 0.75509 0.91560 0.87283 0.89195 0.88940 0.88425 0.92212 0.89613 0.90098 0.94117 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.30 10.69 21.45 0.23 -51.07 16 2 C 0.02 1.28 5.29 84.66 0.45 1.73 16 3 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.55 -29.19 8.27 25.60 0.21 -28.98 16 8 H 0.07 3.57 7.79 -2.91 -0.02 3.54 16 9 C 0.23 11.35 0.87 -10.15 -0.01 11.34 16 10 O -0.59 -30.78 13.16 -148.98 -1.96 -32.74 16 11 C -0.11 -4.15 6.13 31.79 0.19 -3.96 16 12 C 0.11 3.51 6.15 86.73 0.53 4.05 16 13 N -0.63 -26.97 3.33 -829.71 -2.76 -29.73 16 14 C 0.71 30.21 8.44 179.05 1.51 31.72 16 15 O -0.65 -33.80 16.25 -3.99 -0.06 -33.87 16 16 N -0.72 -22.12 5.01 -462.33 -2.32 -24.43 16 17 C 0.19 5.22 2.71 44.05 0.12 5.34 16 18 H 0.06 2.12 7.55 -2.38 -0.02 2.10 16 19 C -0.19 -5.26 9.33 27.03 0.25 -5.01 16 20 C -0.13 -2.68 9.81 27.03 0.27 -2.41 16 21 C -0.09 -1.20 6.11 29.61 0.18 -1.02 16 22 C -0.11 -1.52 6.00 30.68 0.18 -1.33 16 23 C -0.12 -1.94 5.48 30.73 0.17 -1.77 16 24 C 0.13 6.62 5.38 86.86 0.47 7.08 16 25 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.37 20.59 7.56 -74.06 -0.56 20.03 16 27 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.09 3.15 8.03 -2.39 -0.02 3.13 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.41 9.78 7.58 -92.71 -0.70 9.07 16 32 H 0.07 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 38 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 39 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.04 2.41 7.33 -2.39 -0.02 2.39 16 41 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -69.94 330.79 -0.55 -70.48 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.23 Total: 40.20 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 4.53 Total: 16.79 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.85 Total: -105.23 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -2.03 Total: -66.60 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -69.94 -0.55 -70.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.891 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds