Wall clock time and date at job start Tue Mar 31 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00265 * 2 1 4 4 H 1.48494 * 109.47076 * 264.87972 * 3 2 1 5 5 H 1.48503 * 109.46715 * 24.88009 * 3 2 1 6 6 H 1.48503 * 109.46998 * 144.87589 * 3 2 1 7 7 C 1.37877 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 6.08140 * 7 2 1 9 9 C 1.50701 * 119.99926 * 186.07864 * 7 2 1 10 10 O 1.42891 * 110.88783 * 60.74711 * 9 7 2 11 11 C 1.55164 * 111.00540 * 296.86510 * 9 7 2 12 12 C 1.54369 * 102.92141 * 206.45695 * 11 9 7 13 13 N 1.47025 * 107.28877 * 22.13340 * 12 11 9 14 14 C 1.34780 * 125.64766 * 181.12605 * 13 12 11 15 15 O 1.21579 * 120.00067 * 179.97438 * 14 13 12 16 16 N 1.34773 * 119.99596 * 359.96551 * 14 13 12 17 17 C 1.46508 * 119.99503 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.35831 * 35.27224 * 17 16 14 19 19 C 1.50072 * 109.35391 * 275.68732 * 17 16 14 20 20 C 1.29445 * 124.07296 * 222.65688 * 19 17 16 21 21 C 1.50070 * 124.07582 * 0.48272 * 20 19 17 22 22 C 1.53025 * 110.14712 * 342.85841 * 21 20 19 23 23 C 1.53022 * 109.35532 * 155.00086 * 17 16 14 24 24 C 1.47421 * 108.70445 * 1.09833 * 13 12 11 25 25 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00506 * 59.30160 * 10 9 7 27 27 H 1.09004 * 110.71838 * 324.78916 * 11 9 7 28 28 H 1.08997 * 110.71695 * 88.05927 * 11 9 7 29 29 H 1.09000 * 109.84442 * 262.73600 * 12 11 9 30 30 H 1.08996 * 110.03289 * 141.64739 * 12 11 9 31 31 H 0.97004 * 120.00847 * 359.97438 * 16 14 13 32 32 H 1.07999 * 117.96591 * 42.64240 * 19 17 16 33 33 H 1.07999 * 117.96299 * 180.44951 * 20 19 17 34 34 H 1.09004 * 109.35445 * 222.65884 * 21 20 19 35 35 H 1.08995 * 109.24845 * 103.00074 * 21 20 19 36 36 H 1.09003 * 109.64008 * 289.76125 * 22 21 20 37 37 H 1.08995 * 109.64372 * 169.12727 * 22 21 20 38 38 H 1.08992 * 109.64592 * 289.32301 * 23 17 16 39 39 H 1.09000 * 109.64411 * 49.95830 * 23 17 16 40 40 H 1.08999 * 110.36870 * 217.02961 * 24 13 12 41 41 H 1.08997 * 110.46211 * 94.75294 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6049 1.9839 -1.3944 5 1 1.3967 2.6815 0.5891 6 1 3.4884 1.4738 0.8056 7 6 2.0044 -1.1941 -0.0005 8 1 1.4690 -2.1267 -0.1000 9 6 3.5051 -1.1978 0.1377 10 8 3.9040 -0.6098 1.3774 11 6 4.1759 -0.4766 -1.0613 12 6 5.5675 -1.1411 -1.1292 13 7 5.4621 -2.4454 -0.4590 14 6 6.4694 -3.3244 -0.2880 15 8 6.2666 -4.3777 0.2843 16 7 7.7015 -3.0358 -0.7517 17 6 8.7966 -3.9910 -0.5653 18 1 8.4076 -5.0062 -0.6427 19 6 9.4014 -3.7953 0.7941 20 6 10.6743 -3.7998 1.0291 21 6 11.7235 -3.9911 -0.0267 22 6 11.0983 -4.5893 -1.2888 23 6 9.8535 -3.7687 -1.6494 24 6 4.0722 -2.6324 -0.0044 25 1 -0.4850 0.8401 0.0004 26 1 3.5488 -1.0575 2.1575 27 1 3.6179 -0.6559 -1.9804 28 1 4.2670 0.5920 -0.8665 29 1 6.3002 -0.5187 -0.6154 30 1 5.8641 -1.2812 -2.1686 31 1 7.8633 -2.1956 -1.2088 32 1 8.7330 -3.6408 1.6283 33 1 11.0017 -3.6565 2.0482 34 1 12.4948 -4.6639 0.3482 35 1 12.1711 -3.0268 -0.2674 36 1 10.8130 -5.6245 -1.1010 37 1 11.8154 -4.5466 -2.1085 38 1 9.4647 -4.0973 -2.6131 39 1 10.1130 -2.7111 -1.6968 40 1 4.0533 -3.1447 0.9575 41 1 3.5018 -3.1943 -0.7439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332092327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:59 Heat of formation + Delta-G solvation = -56.378354 kcal Electronic energy + Delta-G solvation = -22486.011861 eV Core-core repulsion = 19173.211381 eV Total energy + Delta-G solvation = -3312.800480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13720 -38.69191 -37.37191 -34.48727 -33.98310 -32.43367 -31.24533 -30.53664 -29.12288 -28.16744 -25.20773 -23.18755 -22.57073 -22.32495 -19.91981 -19.61892 -18.36538 -17.74054 -17.23107 -16.59238 -15.75714 -15.39917 -14.95986 -14.80673 -14.41098 -14.00778 -13.80062 -13.48060 -13.13976 -12.99344 -12.88502 -12.79706 -12.56270 -12.39175 -12.03770 -11.62755 -11.40377 -11.33032 -11.10080 -10.87792 -10.58724 -10.56425 -10.36635 -10.09984 -9.78837 -9.19708 -9.04615 -8.98603 -8.77769 -8.53542 -7.96730 -6.23814 -4.35395 2.09619 3.02409 3.26944 3.39592 3.53216 3.57334 4.24302 4.39656 4.49341 4.53822 4.73675 4.95574 5.05981 5.14465 5.16853 5.26559 5.32155 5.36646 5.40500 5.54573 5.61985 5.62795 5.72516 5.77245 5.86243 6.00049 6.08125 6.11344 6.44944 6.46643 6.56797 6.60767 6.63366 6.65216 6.85903 7.11461 7.35260 7.49956 8.17222 8.31173 8.72969 8.90771 8.92294 9.39589 10.86688 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038366 B = 0.003873 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.646537 B = 7227.975102 C = 7375.589364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.090 3.910 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.230 1.230 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.216 3.784 10 O -0.572 6.572 11 C -0.125 4.125 12 C 0.105 3.895 13 N -0.627 5.627 14 C 0.719 3.281 15 O -0.597 6.597 16 N -0.743 5.743 17 C 0.194 3.806 18 H 0.095 0.905 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.126 4.126 24 C 0.112 3.888 25 H 0.267 0.733 26 H 0.366 0.634 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.394 0.606 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.036 -3.978 -3.491 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.116 4.116 3 Si 0.703 3.297 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.153 1.153 7 C -0.589 4.589 8 H 0.098 0.902 9 C 0.176 3.824 10 O -0.378 6.378 11 C -0.163 4.163 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.422 3.578 15 O -0.477 6.477 16 N -0.398 5.398 17 C 0.089 3.911 18 H 0.113 0.887 19 C -0.173 4.173 20 C -0.177 4.177 21 C -0.128 4.128 22 C -0.154 4.154 23 C -0.164 4.164 24 C -0.011 4.011 25 H 0.077 0.923 26 H 0.213 0.787 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.228 0.772 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.077 -4.314 -3.461 21.790 hybrid contribution -0.018 1.026 0.182 1.042 sum 21.059 -3.288 -3.279 21.565 Atomic orbital electron populations 1.69932 1.06674 1.27655 1.47930 1.24934 0.94552 0.99628 0.92450 0.87063 0.81777 0.82198 0.78672 1.20941 1.22686 1.15270 1.21137 0.88576 0.95339 1.53876 0.90239 1.20109 0.93469 0.86610 0.82244 1.86457 1.76508 1.58903 1.15923 1.22955 0.93289 0.99736 1.00289 1.21987 0.99700 0.84491 0.95673 1.47691 1.09944 1.18272 1.60451 1.15473 0.79714 0.83126 0.79530 1.90882 1.82904 1.25000 1.48865 1.45179 1.07838 1.22881 1.63906 1.19540 0.85532 0.94091 0.91910 0.88692 1.22554 0.96084 0.99999 0.98649 1.22028 0.94308 1.01971 0.99377 1.20476 0.97074 1.01101 0.94176 1.21576 0.96574 0.99751 0.97535 1.21865 0.95175 1.01155 0.98194 1.22874 0.78517 1.00049 0.99614 0.92310 0.78698 0.89266 0.90852 0.92435 0.92598 0.77153 0.87613 0.87951 0.91079 0.90939 0.91314 0.91191 0.90890 0.91172 0.91346 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.88 20.85 24.00 -169.99 -4.08 16.78 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.23 -5.38 5.45 56.52 0.31 -5.07 16 7 C -0.55 -14.54 8.85 -34.44 -0.30 -14.84 16 8 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 9 C 0.22 4.80 0.70 -89.62 -0.06 4.74 16 10 O -0.57 -12.61 10.61 -35.23 -0.37 -12.99 16 11 C -0.12 -2.47 4.74 -24.87 -0.12 -2.59 16 12 C 0.10 1.72 6.15 -3.04 -0.02 1.71 16 13 N -0.63 -11.66 3.33 -176.21 -0.59 -12.25 16 14 C 0.72 13.21 8.43 -86.92 -0.73 12.48 16 15 O -0.60 -13.01 16.26 5.30 0.09 -12.92 16 16 N -0.74 -10.31 5.02 -60.10 -0.30 -10.62 16 17 C 0.19 2.37 2.70 -69.37 -0.19 2.18 16 18 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 19 C -0.15 -1.89 9.32 -35.90 -0.33 -2.22 16 20 C -0.16 -1.57 9.80 -35.90 -0.35 -1.92 16 21 C -0.09 -0.70 6.12 -28.17 -0.17 -0.87 16 22 C -0.12 -0.87 6.01 -26.51 -0.16 -1.02 16 23 C -0.13 -1.10 5.48 -26.51 -0.15 -1.24 16 24 C 0.11 2.33 6.08 -2.53 -0.02 2.32 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.37 7.23 9.09 45.56 0.41 7.64 16 27 H 0.09 1.75 8.03 -51.93 -0.42 1.33 16 28 H 0.07 1.48 4.98 -51.93 -0.26 1.22 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.39 4.63 7.57 -40.82 -0.31 4.32 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 40 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 41 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -31.91 323.52 -7.98 -39.89 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.67 Total: 11.38 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.70 Total: 1.06 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.11 Total: -48.07 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.29 Total: -25.91 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.08 Total: 16.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.91 -7.98 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.487 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds