Wall clock time and date at job start Tue Mar 31 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00265 * 2 1 4 4 H 1.48494 * 109.47076 * 264.87972 * 3 2 1 5 5 H 1.48503 * 109.46715 * 24.88009 * 3 2 1 6 6 H 1.48503 * 109.46998 * 144.87589 * 3 2 1 7 7 C 1.37877 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 6.08140 * 7 2 1 9 9 C 1.50701 * 119.99926 * 186.07864 * 7 2 1 10 10 O 1.42891 * 110.88783 * 60.74711 * 9 7 2 11 11 C 1.55164 * 111.00540 * 296.86510 * 9 7 2 12 12 C 1.54369 * 102.92141 * 206.45695 * 11 9 7 13 13 N 1.47025 * 107.28877 * 22.13340 * 12 11 9 14 14 C 1.34780 * 125.64766 * 181.12605 * 13 12 11 15 15 O 1.21579 * 120.00067 * 179.97438 * 14 13 12 16 16 N 1.34773 * 119.99596 * 359.96551 * 14 13 12 17 17 C 1.46508 * 119.99503 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.35831 * 35.27224 * 17 16 14 19 19 C 1.50072 * 109.35391 * 275.68732 * 17 16 14 20 20 C 1.29445 * 124.07296 * 222.65688 * 19 17 16 21 21 C 1.50070 * 124.07582 * 0.48272 * 20 19 17 22 22 C 1.53025 * 110.14712 * 342.85841 * 21 20 19 23 23 C 1.53022 * 109.35532 * 155.00086 * 17 16 14 24 24 C 1.47421 * 108.70445 * 1.09833 * 13 12 11 25 25 H 0.97003 * 120.00135 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00506 * 59.30160 * 10 9 7 27 27 H 1.09004 * 110.71838 * 324.78916 * 11 9 7 28 28 H 1.08997 * 110.71695 * 88.05927 * 11 9 7 29 29 H 1.09000 * 109.84442 * 262.73600 * 12 11 9 30 30 H 1.08996 * 110.03289 * 141.64739 * 12 11 9 31 31 H 0.97004 * 120.00847 * 359.97438 * 16 14 13 32 32 H 1.07999 * 117.96591 * 42.64240 * 19 17 16 33 33 H 1.07999 * 117.96299 * 180.44951 * 20 19 17 34 34 H 1.09004 * 109.35445 * 222.65884 * 21 20 19 35 35 H 1.08995 * 109.24845 * 103.00074 * 21 20 19 36 36 H 1.09003 * 109.64008 * 289.76125 * 22 21 20 37 37 H 1.08995 * 109.64372 * 169.12727 * 22 21 20 38 38 H 1.08992 * 109.64592 * 289.32301 * 23 17 16 39 39 H 1.09000 * 109.64411 * 49.95830 * 23 17 16 40 40 H 1.08999 * 110.36870 * 217.02961 * 24 13 12 41 41 H 1.08997 * 110.46211 * 94.75294 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6049 1.9839 -1.3944 5 1 1.3967 2.6815 0.5891 6 1 3.4884 1.4738 0.8056 7 6 2.0044 -1.1941 -0.0005 8 1 1.4690 -2.1267 -0.1000 9 6 3.5051 -1.1978 0.1377 10 8 3.9040 -0.6098 1.3774 11 6 4.1759 -0.4766 -1.0613 12 6 5.5675 -1.1411 -1.1292 13 7 5.4621 -2.4454 -0.4590 14 6 6.4694 -3.3244 -0.2880 15 8 6.2666 -4.3777 0.2843 16 7 7.7015 -3.0358 -0.7517 17 6 8.7966 -3.9910 -0.5653 18 1 8.4076 -5.0062 -0.6427 19 6 9.4014 -3.7953 0.7941 20 6 10.6743 -3.7998 1.0291 21 6 11.7235 -3.9911 -0.0267 22 6 11.0983 -4.5893 -1.2888 23 6 9.8535 -3.7687 -1.6494 24 6 4.0722 -2.6324 -0.0044 25 1 -0.4850 0.8401 0.0004 26 1 3.5488 -1.0575 2.1575 27 1 3.6179 -0.6559 -1.9804 28 1 4.2670 0.5920 -0.8665 29 1 6.3002 -0.5187 -0.6154 30 1 5.8641 -1.2812 -2.1686 31 1 7.8633 -2.1956 -1.2088 32 1 8.7330 -3.6408 1.6283 33 1 11.0017 -3.6565 2.0482 34 1 12.4948 -4.6639 0.3482 35 1 12.1711 -3.0268 -0.2674 36 1 10.8130 -5.6245 -1.1010 37 1 11.8154 -4.5466 -2.1085 38 1 9.4647 -4.0973 -2.6131 39 1 10.1130 -2.7111 -1.6968 40 1 4.0533 -3.1447 0.9575 41 1 3.5018 -3.1943 -0.7439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332092327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:59 Heat of formation + Delta-G solvation = -80.619988 kcal Electronic energy + Delta-G solvation = -22487.063057 eV Core-core repulsion = 19173.211381 eV Total energy + Delta-G solvation = -3313.851676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48970 -39.86835 -38.74203 -36.14639 -35.13981 -34.50901 -32.06860 -31.98342 -30.29183 -29.69037 -26.99065 -24.43510 -23.54989 -23.28597 -21.62400 -21.04451 -19.67756 -19.10651 -18.61498 -17.69594 -17.06477 -16.80675 -16.68832 -16.48203 -15.63216 -15.30088 -15.10054 -14.75395 -14.62084 -14.28150 -14.13927 -13.84684 -13.67462 -13.50510 -13.34167 -13.14961 -13.08640 -12.80463 -12.36457 -12.23549 -12.07172 -11.84848 -11.56394 -11.37249 -11.27447 -10.98787 -10.77652 -10.40906 -10.20725 -10.01187 -9.43918 -8.36538 -6.51995 1.17818 1.38000 1.46886 1.67838 1.74329 2.10675 2.40208 2.98728 3.03423 3.53469 3.71376 3.80167 3.82629 4.02962 4.07739 4.20033 4.23362 4.41647 4.42346 4.49745 4.57698 4.63004 4.74545 4.79177 4.90554 4.94493 5.04780 5.08183 5.12333 5.15449 5.32361 5.37443 5.41464 5.49815 5.52348 5.68885 5.96180 6.06271 6.11546 6.58921 6.97898 7.10369 7.28890 7.52865 8.77762 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038366 B = 0.003873 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.646537 B = 7227.975102 C = 7375.589364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.309 1.309 6 H -0.219 1.219 7 C -0.553 4.553 8 H 0.038 0.962 9 C 0.215 3.785 10 O -0.573 6.573 11 C -0.127 4.127 12 C 0.110 3.890 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.640 6.640 16 N -0.724 5.724 17 C 0.194 3.806 18 H 0.068 0.932 19 C -0.187 4.187 20 C -0.132 4.132 21 C -0.092 4.092 22 C -0.115 4.115 23 C -0.118 4.118 24 C 0.120 3.880 25 H 0.269 0.731 26 H 0.374 0.626 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.409 0.591 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.054 -2.579 -4.847 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.237 1.237 6 H -0.142 1.142 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.175 3.825 10 O -0.380 6.380 11 C -0.164 4.164 12 C -0.012 4.012 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.522 6.522 16 N -0.379 5.379 17 C 0.089 3.911 18 H 0.086 0.914 19 C -0.206 4.206 20 C -0.151 4.151 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.004 4.004 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.153 -2.904 -4.846 25.779 hybrid contribution -1.257 0.469 0.681 1.504 sum 23.896 -2.435 -4.165 24.378 Atomic orbital electron populations 1.70066 1.08559 1.28590 1.50163 1.25758 0.95114 1.03251 0.92103 0.86071 0.80399 0.77388 0.79716 1.18795 1.23673 1.14195 1.21349 0.91082 0.93719 1.52890 0.94327 1.19979 0.91135 0.88122 0.83293 1.86412 1.76315 1.59121 1.16169 1.22914 0.95034 0.99875 0.98622 1.22098 0.98005 0.83128 0.97979 1.47616 1.08962 1.19297 1.60786 1.15663 0.80738 0.82479 0.79404 1.90851 1.83755 1.26857 1.50737 1.45082 1.06539 1.23680 1.62592 1.19674 0.85665 0.92322 0.93409 0.91380 1.22331 0.96602 1.03952 0.97749 1.22333 0.93951 0.98196 1.00651 1.20586 0.96449 1.02497 0.93344 1.21613 0.96351 0.99019 0.98317 1.21862 0.94420 1.02377 0.96916 1.22540 0.80184 0.98986 0.98700 0.92239 0.77832 0.89351 0.90494 0.90421 0.88802 0.75459 0.91025 0.87291 0.89350 0.89123 0.92051 0.88677 0.90119 0.89719 0.92814 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.96 21.45 0.30 -56.14 16 2 C 0.04 2.13 5.47 84.66 0.46 2.59 16 3 Si 0.94 42.65 24.00 68.60 1.65 44.29 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.22 -9.53 5.45 99.48 0.54 -8.98 16 7 C -0.55 -29.91 8.85 25.60 0.23 -29.69 16 8 H 0.04 2.34 8.03 -2.91 -0.02 2.32 16 9 C 0.22 9.50 0.70 -10.14 -0.01 9.50 16 10 O -0.57 -24.71 10.61 -148.98 -1.58 -26.29 16 11 C -0.13 -4.72 4.74 31.80 0.15 -4.57 16 12 C 0.11 3.26 6.15 86.74 0.53 3.79 16 13 N -0.63 -22.76 3.33 -829.68 -2.76 -25.52 16 14 C 0.72 25.97 8.43 179.05 1.51 27.48 16 15 O -0.64 -28.66 16.26 -3.97 -0.06 -28.72 16 16 N -0.72 -18.92 5.02 -462.32 -2.32 -21.24 16 17 C 0.19 4.51 2.70 44.05 0.12 4.63 16 18 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 19 C -0.19 -4.49 9.32 27.04 0.25 -4.24 16 20 C -0.13 -2.35 9.80 27.04 0.27 -2.08 16 21 C -0.09 -1.04 6.12 29.66 0.18 -0.86 16 22 C -0.12 -1.29 6.01 30.74 0.18 -1.11 16 23 C -0.12 -1.68 5.48 30.73 0.17 -1.51 16 24 C 0.12 5.07 6.08 86.86 0.53 5.60 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.37 14.74 9.09 -74.06 -0.67 14.07 16 27 H 0.09 3.29 8.03 -2.38 -0.02 3.27 16 28 H 0.08 2.83 4.98 -2.39 -0.01 2.82 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.41 8.26 7.57 -92.71 -0.70 7.55 16 32 H 0.07 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.00 8.11 -2.39 -0.02 0.98 16 40 H 0.05 2.39 8.04 -2.39 -0.02 2.37 16 41 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 Total: -1.00 -72.08 323.52 -0.71 -72.79 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.50 Total: 31.32 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.58 Total: 9.52 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.78 Total: -102.91 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -1.65 Total: -55.01 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.65 Total: 44.29 kcal Total: -72.08 -0.71 -72.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332092327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.833 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds