Wall clock time and date at job start Tue Mar 31 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48504 * 109.47244 * 240.00045 * 3 2 1 5 5 H 1.48498 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47146 * 119.99893 * 3 2 1 7 7 C 1.38948 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00513 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00178 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99748 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00163 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47000 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99584 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99823 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47207 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47206 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47127 * 0.02562 * 18 17 16 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52997 * 109.46991 * 60.00378 * 20 19 18 22 22 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 23 23 C 1.52999 * 109.47232 * 60.00018 * 16 14 13 24 24 H 0.96993 * 120.00342 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99658 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47073 * 60.00155 * 12 10 9 27 27 H 1.08999 * 109.47061 * 299.99841 * 12 10 9 28 28 H 0.96997 * 120.00420 * 0.02562 * 13 12 10 29 29 H 1.08998 * 109.47006 * 60.00037 * 17 16 14 30 30 H 1.08999 * 109.47160 * 299.99704 * 17 16 14 31 31 H 1.09001 * 109.47502 * 240.00500 * 18 17 16 32 32 H 1.09001 * 109.47289 * 120.00297 * 18 17 16 33 33 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 35 35 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 36 36 H 1.09006 * 109.47073 * 239.99153 * 21 20 19 37 37 H 1.09008 * 109.47182 * 119.99786 * 21 20 19 38 38 H 1.09001 * 109.47375 * 59.99966 * 22 19 18 39 39 H 1.09002 * 109.46777 * 180.02562 * 22 19 18 40 40 H 1.08997 * 109.47345 * 300.00425 * 23 16 14 41 41 H 1.08999 * 109.47218 * 60.00245 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2104 -3.5577 -0.0031 12 6 1.2440 -4.8629 -0.0032 13 7 2.1960 -5.9764 -0.0037 14 6 1.7468 -7.2471 -0.0038 15 8 0.5544 -7.4687 -0.0039 16 6 2.7261 -8.3925 -0.0037 17 6 1.9612 -9.7176 -0.0044 18 6 2.9554 -10.8804 -0.0050 19 6 4.3833 -10.3306 -0.0040 20 6 4.6004 -9.4734 -1.2526 21 6 3.6062 -8.3105 -1.2520 22 6 4.5996 -9.4753 1.2460 23 6 3.6056 -8.3115 1.2456 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0016 26 1 0.6170 -4.9201 -0.8930 27 1 0.6177 -4.9213 0.8870 28 1 3.1497 -5.7991 -0.0033 29 1 1.3349 -9.7750 -0.8947 30 1 1.3342 -9.7756 0.8853 31 1 2.8011 -11.4900 -0.8953 32 1 2.8009 -11.4910 0.8846 33 1 5.0916 -11.1591 -0.0040 34 1 5.6178 -9.0821 -1.2521 35 1 4.4464 -10.0827 -2.1430 36 1 2.9798 -8.3676 -2.1423 37 1 4.1512 -7.3665 -1.2511 38 1 4.4448 -10.0860 2.1354 39 1 5.6167 -9.0833 1.2464 40 1 4.1506 -7.3675 1.2457 41 1 2.9789 -8.3693 2.1355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335921628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:31 Heat of formation + Delta-G solvation = -104.171816 kcal Electronic energy + Delta-G solvation = -22281.085366 eV Core-core repulsion = 18966.212406 eV Total energy + Delta-G solvation = -3314.872960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15689 -38.84951 -37.88342 -34.47727 -33.70804 -31.91875 -31.35586 -31.04566 -30.92120 -27.59475 -24.64304 -22.93551 -22.84518 -22.59773 -20.11706 -19.59549 -18.20755 -17.60966 -16.64016 -16.11239 -15.96293 -15.65958 -15.14737 -15.00326 -14.87813 -14.27152 -13.69526 -13.69017 -13.14724 -12.86310 -12.28435 -12.26636 -12.23067 -12.21254 -12.12765 -12.12544 -12.03612 -11.73341 -11.63301 -11.10849 -10.60323 -10.57596 -10.51277 -10.31897 -9.98185 -9.95698 -9.63257 -9.41641 -8.75963 -8.63448 -8.10796 -6.51970 -3.94171 2.85260 3.13289 3.20901 3.23791 3.40780 3.73640 4.10737 4.33640 4.40977 4.50700 4.87991 4.96868 5.04143 5.12751 5.16586 5.17909 5.19967 5.24025 5.24137 5.27541 5.28704 5.46607 5.80342 5.86828 5.90122 5.91849 5.96520 6.03744 6.06934 6.11917 6.13050 6.18106 6.19853 6.24104 6.25847 6.71396 7.45152 7.84650 7.91348 8.43708 8.49657 9.03826 9.38685 9.86624 10.64872 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.038195 B = 0.003373 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.908823 B = 8299.107203 C = 8675.436377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.705 5.705 14 C 0.519 3.481 15 O -0.550 6.550 16 C -0.068 4.068 17 C -0.092 4.092 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.109 4.109 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.410 0.590 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -18.645 -0.006 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.359 5.359 14 C 0.305 3.695 15 O -0.428 6.428 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.147 4.147 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.977 -18.578 -0.007 19.516 hybrid contribution 0.115 1.105 0.000 1.111 sum 6.092 -17.473 -0.007 18.504 Atomic orbital electron populations 1.69604 1.06019 1.28650 1.49233 1.25324 0.95660 0.99932 0.96758 0.85872 0.78781 0.80145 0.79164 1.19761 1.20847 1.19767 1.19685 0.93439 0.82027 1.48397 0.87726 1.41793 1.09475 1.04476 1.62602 1.19756 0.88299 0.85004 0.85581 1.90492 1.13704 1.86845 1.57400 1.20952 0.91991 0.85918 1.03146 1.45750 1.11502 1.04656 1.73998 1.20511 0.89379 0.83709 0.75899 1.90665 1.16841 1.84925 1.50323 1.20653 0.95032 0.94007 0.97452 1.21324 0.96849 0.91570 1.03255 1.21581 0.94296 0.97362 1.01790 1.21065 0.96962 0.97616 0.95046 1.21525 0.99083 0.96547 0.97632 1.21568 0.97295 0.99477 0.96321 1.21537 0.99089 0.96541 0.97624 1.21584 0.97303 0.99468 0.96307 0.91522 0.77041 0.89936 0.89945 0.75162 0.91300 0.91293 0.91905 0.91911 0.91119 0.91611 0.91810 0.91401 0.91042 0.91798 0.91613 0.91040 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.05 55.50 0.72 -23.22 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.72 16 10 C 0.43 9.86 7.85 -10.99 -0.09 9.77 16 11 O -0.60 -15.27 15.24 5.54 0.08 -15.19 16 12 C 0.11 2.02 6.15 -5.20 -0.03 1.99 16 13 N -0.71 -11.92 5.31 -61.48 -0.33 -12.25 16 14 C 0.52 8.34 6.48 -10.98 -0.07 8.27 16 15 O -0.55 -10.49 15.98 5.56 0.09 -10.40 16 16 C -0.07 -0.84 0.61 -155.68 -0.10 -0.93 16 17 C -0.09 -1.05 4.28 -26.73 -0.11 -1.17 16 18 C -0.11 -0.99 5.71 -26.73 -0.15 -1.14 16 19 C -0.09 -0.74 3.19 -90.62 -0.29 -1.03 16 20 C -0.11 -0.97 5.71 -26.73 -0.15 -1.12 16 21 C -0.11 -1.19 4.88 -26.76 -0.13 -1.32 16 22 C -0.11 -0.97 5.71 -26.71 -0.15 -1.12 16 23 C -0.11 -1.19 4.89 -26.71 -0.13 -1.32 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.84 6.27 -40.82 -0.26 6.58 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.81 7.56 -51.92 -0.39 0.42 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -30.40 326.91 -7.60 -38.00 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.37 Total: 13.37 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.65 Total: 2.99 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.34 Total: -49.20 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.17 Total: -25.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.40 -7.60 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335921628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.174 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds