Wall clock time and date at job start Tue Mar 31 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00441 * 2 1 4 4 H 1.48504 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47160 * 299.99755 * 3 2 1 6 6 H 1.48496 * 109.47475 * 59.99806 * 3 2 1 7 7 C 1.37880 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47347 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47773 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00398 * 180.02562 * 11 10 9 13 13 O 1.21354 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.49449 * 120.00157 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00036 * 359.97438 * 14 12 11 16 16 N 1.34783 * 120.00249 * 180.02562 * 14 12 11 17 17 C 1.46496 * 120.00185 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47202 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47445 * 179.97438 * 18 17 16 20 20 C 1.54639 * 111.03467 * 72.97178 * 19 18 17 21 21 C 1.51102 * 104.72213 * 142.67029 * 20 19 18 22 22 C 1.30534 * 111.10436 * 343.56216 * 21 20 19 23 23 C 1.51096 * 111.10422 * 0.02562 * 22 21 20 24 24 H 0.97012 * 119.99705 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47680 * 60.00165 * 9 7 2 26 26 H 1.09000 * 109.47512 * 299.99714 * 9 7 2 27 27 H 1.09003 * 109.46887 * 59.99532 * 10 9 7 28 28 H 1.08998 * 109.46979 * 300.00552 * 10 9 7 29 29 H 0.97002 * 119.99704 * 0.02562 * 11 10 9 30 30 H 0.97002 * 119.99806 * 359.97438 * 16 14 12 31 31 H 1.08998 * 109.47145 * 59.99364 * 17 16 14 32 32 H 1.09000 * 109.46867 * 300.00036 * 17 16 14 33 33 H 1.09000 * 109.47345 * 60.00159 * 18 17 16 34 34 H 1.09000 * 109.47269 * 299.99826 * 18 17 16 35 35 H 1.09007 * 110.94289 * 308.99201 * 19 18 17 36 36 H 1.08992 * 110.38567 * 23.86009 * 20 19 18 37 37 H 1.08997 * 110.38675 * 261.47791 * 20 19 18 38 38 H 1.07997 * 124.44898 * 163.82826 * 21 20 19 39 39 H 1.07996 * 124.44503 * 179.97438 * 22 21 20 40 40 H 1.08994 * 110.38987 * 135.24587 * 23 22 21 41 41 H 1.09002 * 110.38585 * 257.51121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0017 10 6 2.2449 -3.6622 0.0027 11 7 1.5124 -4.9309 0.0045 12 6 2.1862 -6.0980 0.0062 13 8 3.3997 -6.0981 0.0058 14 6 1.4389 -7.3923 0.0074 15 8 0.2254 -7.3922 0.0073 16 7 2.1127 -8.5596 0.0096 17 6 1.3801 -9.8282 0.0113 18 6 2.3742 -10.9912 0.0130 19 6 1.6092 -12.3162 0.0155 20 6 0.9652 -12.5879 -1.3639 21 6 1.1026 -14.0792 -1.5648 22 6 1.9815 -14.5851 -0.7430 23 6 2.5763 -13.5158 0.1434 24 1 -0.4850 0.8402 -0.0004 25 1 0.6238 -2.5575 -0.8879 26 1 0.6245 -2.5563 0.8920 27 1 2.8716 -3.6036 0.8927 28 1 2.8716 -3.6052 -0.8872 29 1 0.5424 -4.9308 0.0044 30 1 3.0827 -8.5597 0.0100 31 1 0.7538 -9.8873 -0.8788 32 1 0.7531 -9.8844 0.9011 33 1 3.0008 -10.9323 0.9029 34 1 3.0009 -10.9348 -0.8770 35 1 0.8599 -12.3320 0.8070 36 1 1.5002 -12.0486 -2.1455 37 1 -0.0864 -12.3013 -1.3551 38 1 0.5496 -14.6507 -2.2956 39 1 2.2479 -15.6309 -0.7015 40 1 2.6203 -13.8601 1.1766 41 1 3.5713 -13.2419 -0.2075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342001126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:04 Heat of formation + Delta-G solvation = -77.381720 kcal Electronic energy + Delta-G solvation = -20517.570692 eV Core-core repulsion = 17203.859437 eV Total energy + Delta-G solvation = -3313.711254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42750 -39.33775 -38.24397 -35.76524 -34.89186 -32.88141 -32.15289 -29.81923 -28.63999 -27.81775 -25.57744 -23.93592 -22.44479 -21.06506 -20.67361 -19.93627 -19.17576 -18.22877 -16.85711 -16.55407 -16.25554 -16.01579 -15.44641 -15.22239 -14.83331 -14.67430 -14.43206 -13.88010 -13.45457 -13.10978 -12.93029 -12.66270 -12.50466 -12.33279 -12.28039 -11.72696 -11.55370 -11.43520 -11.39827 -11.22546 -11.07799 -10.96180 -10.65194 -10.40737 -9.79350 -9.43863 -9.34571 -9.27347 -9.18352 -8.69526 -8.42229 -6.10460 -4.14017 1.62474 1.87799 2.54406 3.27829 3.35465 3.40028 3.44096 3.87145 4.09915 4.23507 4.39499 4.41385 4.70870 4.77946 4.82079 4.94914 4.98445 5.20649 5.26522 5.35007 5.35935 5.38496 5.49352 5.61667 5.62946 5.72995 5.93986 6.12623 6.15123 6.18338 6.23912 6.49701 6.59843 6.69563 7.06065 7.47061 7.57831 7.67538 7.87120 7.93654 8.21364 8.34458 8.91861 9.50919 11.01047 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.062967 B = 0.002155 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.572269 B =12987.470622 C =13250.460270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.507 3.493 15 O -0.520 6.520 16 N -0.707 5.707 17 C 0.117 3.883 18 C -0.123 4.123 19 C -0.090 4.090 20 C -0.102 4.102 21 C -0.166 4.166 22 C -0.171 4.171 23 C -0.097 4.097 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -27.511 -0.721 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.276 3.724 13 O -0.413 6.413 14 C 0.288 3.712 15 O -0.396 6.396 16 N -0.361 5.361 17 C -0.006 4.006 18 C -0.161 4.161 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.184 4.184 22 C -0.189 4.189 23 C -0.134 4.134 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.246 0.754 30 H 0.248 0.752 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.998 -27.348 -0.718 27.521 hybrid contribution 0.336 0.809 -0.060 0.878 sum 3.334 -26.539 -0.777 26.759 Atomic orbital electron populations 1.69973 1.06095 1.26835 1.50142 1.25010 0.94911 0.99473 0.94956 0.86439 0.80102 0.83270 0.77627 1.19584 1.20930 1.20924 1.21053 0.93263 0.90228 1.51590 0.92100 1.19365 0.94207 0.90890 0.98268 1.21935 0.96273 0.80768 1.01338 1.46234 1.11798 1.05806 1.69841 1.19987 0.87715 0.85286 0.79378 1.90727 1.13239 1.87564 1.49733 1.20456 0.87734 0.85599 0.77413 1.90757 1.13464 1.87689 1.47650 1.45763 1.11451 1.05011 1.73876 1.21474 0.94818 0.81362 1.02986 1.21832 0.98021 0.92841 1.03399 1.21970 0.97564 0.93375 0.97954 1.21534 1.01498 0.93929 0.96909 1.23321 0.99149 0.96341 0.99582 1.23281 0.98361 0.98997 0.98267 1.21425 0.99023 0.93368 0.99585 0.92830 0.95637 0.95649 0.91862 0.91856 0.75377 0.75153 0.90899 0.90971 0.90647 0.90719 0.89712 0.90331 0.90880 0.86018 0.86041 0.91089 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.57 5.55 -60.73 -0.34 -12.90 16 12 C 0.50 8.57 7.89 -11.59 -0.09 8.47 16 13 O -0.53 -10.08 16.48 5.49 0.09 -9.99 16 14 C 0.51 7.58 7.89 -11.58 -0.09 7.49 16 15 O -0.52 -8.84 16.48 5.50 0.09 -8.75 16 16 N -0.71 -7.91 5.55 -60.73 -0.34 -8.24 16 17 C 0.12 1.03 5.58 -4.05 -0.02 1.00 16 18 C -0.12 -0.76 4.70 -26.73 -0.13 -0.89 16 19 C -0.09 -0.54 3.12 -88.91 -0.28 -0.82 16 20 C -0.10 -0.66 5.87 -26.82 -0.16 -0.82 16 21 C -0.17 -1.07 10.78 -35.70 -0.38 -1.46 16 22 C -0.17 -1.06 10.78 -35.70 -0.38 -1.45 16 23 C -0.10 -0.56 6.38 -26.84 -0.17 -0.73 16 24 H 0.26 7.23 8.31 -40.81 -0.34 6.89 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.41 7.18 7.94 -40.82 -0.32 6.86 16 30 H 0.41 4.10 7.94 -40.82 -0.32 3.77 16 31 H 0.07 0.67 7.76 -51.93 -0.40 0.27 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.51 7.74 -51.93 -0.40 0.11 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -31.41 349.08 -8.26 -39.68 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.47 Total: 3.85 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.28 Total: 0.22 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.06 Total: -46.53 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.41 -8.26 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342001126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.704 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds