Wall clock time and date at job start Tue Mar 31 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00441 * 2 1 4 4 H 1.48504 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47160 * 299.99755 * 3 2 1 6 6 H 1.48496 * 109.47475 * 59.99806 * 3 2 1 7 7 C 1.37880 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47347 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47773 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00398 * 180.02562 * 11 10 9 13 13 O 1.21354 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.49449 * 120.00157 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00036 * 359.97438 * 14 12 11 16 16 N 1.34783 * 120.00249 * 180.02562 * 14 12 11 17 17 C 1.46496 * 120.00185 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47202 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.47445 * 179.97438 * 18 17 16 20 20 C 1.54639 * 111.03467 * 72.97178 * 19 18 17 21 21 C 1.51102 * 104.72213 * 142.67029 * 20 19 18 22 22 C 1.30534 * 111.10436 * 343.56216 * 21 20 19 23 23 C 1.51096 * 111.10422 * 0.02562 * 22 21 20 24 24 H 0.97012 * 119.99705 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47680 * 60.00165 * 9 7 2 26 26 H 1.09000 * 109.47512 * 299.99714 * 9 7 2 27 27 H 1.09003 * 109.46887 * 59.99532 * 10 9 7 28 28 H 1.08998 * 109.46979 * 300.00552 * 10 9 7 29 29 H 0.97002 * 119.99704 * 0.02562 * 11 10 9 30 30 H 0.97002 * 119.99806 * 359.97438 * 16 14 12 31 31 H 1.08998 * 109.47145 * 59.99364 * 17 16 14 32 32 H 1.09000 * 109.46867 * 300.00036 * 17 16 14 33 33 H 1.09000 * 109.47345 * 60.00159 * 18 17 16 34 34 H 1.09000 * 109.47269 * 299.99826 * 18 17 16 35 35 H 1.09007 * 110.94289 * 308.99201 * 19 18 17 36 36 H 1.08992 * 110.38567 * 23.86009 * 20 19 18 37 37 H 1.08997 * 110.38675 * 261.47791 * 20 19 18 38 38 H 1.07997 * 124.44898 * 163.82826 * 21 20 19 39 39 H 1.07996 * 124.44503 * 179.97438 * 22 21 20 40 40 H 1.08994 * 110.38987 * 135.24587 * 23 22 21 41 41 H 1.09002 * 110.38585 * 257.51121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0017 10 6 2.2449 -3.6622 0.0027 11 7 1.5124 -4.9309 0.0045 12 6 2.1862 -6.0980 0.0062 13 8 3.3997 -6.0981 0.0058 14 6 1.4389 -7.3923 0.0074 15 8 0.2254 -7.3922 0.0073 16 7 2.1127 -8.5596 0.0096 17 6 1.3801 -9.8282 0.0113 18 6 2.3742 -10.9912 0.0130 19 6 1.6092 -12.3162 0.0155 20 6 0.9652 -12.5879 -1.3639 21 6 1.1026 -14.0792 -1.5648 22 6 1.9815 -14.5851 -0.7430 23 6 2.5763 -13.5158 0.1434 24 1 -0.4850 0.8402 -0.0004 25 1 0.6238 -2.5575 -0.8879 26 1 0.6245 -2.5563 0.8920 27 1 2.8716 -3.6036 0.8927 28 1 2.8716 -3.6052 -0.8872 29 1 0.5424 -4.9308 0.0044 30 1 3.0827 -8.5597 0.0100 31 1 0.7538 -9.8873 -0.8788 32 1 0.7531 -9.8844 0.9011 33 1 3.0008 -10.9323 0.9029 34 1 3.0009 -10.9348 -0.8770 35 1 0.8599 -12.3320 0.8070 36 1 1.5002 -12.0486 -2.1455 37 1 -0.0864 -12.3013 -1.3551 38 1 0.5496 -14.6507 -2.2956 39 1 2.2479 -15.6309 -0.7015 40 1 2.6203 -13.8601 1.1766 41 1 3.5713 -13.2419 -0.2075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342001126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:03 Heat of formation + Delta-G solvation = -98.360287 kcal Electronic energy + Delta-G solvation = -20518.480391 eV Core-core repulsion = 17203.859437 eV Total energy + Delta-G solvation = -3314.620953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.69533 -39.97985 -39.46082 -37.01759 -36.26629 -34.82814 -32.88949 -31.69225 -29.13102 -28.59562 -27.20694 -25.24210 -23.45663 -22.75793 -21.63807 -20.81803 -19.72133 -19.42996 -18.58114 -17.83340 -17.26609 -17.00706 -16.53438 -16.50346 -16.20906 -15.98732 -15.70447 -15.04565 -14.86343 -14.36344 -14.31481 -13.57190 -13.26206 -13.24502 -13.04438 -12.96331 -12.91096 -12.85647 -12.51157 -12.29630 -12.16430 -12.00845 -11.91916 -11.68687 -11.47037 -11.41639 -10.69305 -10.62473 -10.33482 -10.19294 -9.73829 -8.23735 -6.34864 0.32220 1.32630 1.41360 1.42545 1.43978 1.56799 2.12254 2.39936 2.69449 3.11301 3.43711 3.58663 3.76031 3.87678 4.17980 4.23245 4.38693 4.45129 4.47459 4.49930 4.60304 4.80942 4.81285 4.88680 4.90612 4.98627 5.03322 5.07981 5.15088 5.18845 5.23960 5.42470 5.46266 5.54702 5.69655 5.75511 5.93727 6.03831 6.12799 6.36642 6.71374 6.79969 6.93132 7.34736 8.88489 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.062967 B = 0.002155 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.572269 B =12987.470622 C =13250.460270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.137 3.863 11 N -0.689 5.689 12 C 0.500 3.500 13 O -0.549 6.549 14 C 0.513 3.487 15 O -0.544 6.544 16 N -0.687 5.687 17 C 0.115 3.885 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.105 4.105 21 C -0.180 4.180 22 C -0.175 4.175 23 C -0.098 4.098 24 H 0.265 0.735 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.421 0.579 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -28.407 -0.581 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.293 3.707 15 O -0.421 6.421 16 N -0.340 5.340 17 C -0.007 4.007 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.142 4.142 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.251 0.749 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.302 -28.295 -0.577 28.626 hybrid contribution -0.063 0.985 -0.108 0.993 sum 4.239 -27.310 -0.685 27.646 Atomic orbital electron populations 1.70088 1.07704 1.27959 1.51028 1.25934 0.95797 1.03337 0.94452 0.85338 0.79059 0.78530 0.77749 1.18578 1.20405 1.20388 1.21483 0.93778 0.91531 1.51422 0.91659 1.19188 0.94376 0.91970 0.96471 1.21481 0.95082 0.80770 1.01180 1.46078 1.11925 1.05514 1.70510 1.20364 0.87575 0.85761 0.78272 1.90716 1.13952 1.87920 1.50191 1.19965 0.87207 0.85565 0.78002 1.90759 1.14168 1.87805 1.49402 1.45768 1.11968 1.04674 1.71589 1.21671 0.95404 0.80809 1.02866 1.21768 0.97411 0.91583 1.04268 1.21946 0.97650 0.93378 0.97678 1.21565 1.01380 0.94108 0.97162 1.23469 0.99700 0.96442 1.00156 1.23494 0.98094 0.99697 0.98032 1.21448 0.99043 0.92994 0.99964 0.92581 0.97399 0.97403 0.91979 0.91981 0.74945 0.74168 0.91113 0.91026 0.89560 0.90066 0.89726 0.90484 0.91188 0.85436 0.85036 0.90395 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.88 5.09 29.85 0.15 1.04 16 10 C 0.14 5.77 5.61 86.38 0.48 6.26 16 11 N -0.69 -25.22 5.55 -464.42 -2.58 -27.79 16 12 C 0.50 16.86 7.89 87.27 0.69 17.55 16 13 O -0.55 -20.09 16.48 -3.26 -0.05 -20.15 16 14 C 0.51 14.80 7.89 87.27 0.69 15.49 16 15 O -0.54 -18.13 16.48 -3.24 -0.05 -18.19 16 16 N -0.69 -14.19 5.55 -464.42 -2.58 -16.77 16 17 C 0.11 1.82 5.58 86.38 0.48 2.30 16 18 C -0.11 -1.15 4.70 30.59 0.14 -1.00 16 19 C -0.09 -0.91 3.12 -9.68 -0.03 -0.94 16 20 C -0.11 -1.24 5.87 30.53 0.18 -1.06 16 21 C -0.18 -2.12 10.78 26.25 0.28 -1.84 16 22 C -0.18 -1.90 10.78 26.25 0.28 -1.62 16 23 C -0.10 -0.94 6.38 30.52 0.19 -0.74 16 24 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.41 14.65 7.94 -92.71 -0.74 13.92 16 30 H 0.42 7.46 7.94 -92.71 -0.74 6.73 16 31 H 0.07 1.21 7.76 -2.39 -0.02 1.19 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.76 7.92 -2.39 -0.02 0.74 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.92 7.74 -2.39 -0.02 0.90 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.13 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.13 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.72 7.89 -2.39 -0.02 0.70 16 Total: -1.00 -65.99 349.08 0.85 -65.14 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.44 Total: 20.66 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 4.24 Total: 6.29 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.87 Total: -99.18 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.11 Total: -38.33 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.99 0.85 -65.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342001126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.224 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds