Wall clock time and date at job start Tue Mar 31 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 O 1.45201 * 109.46718 * 179.97438 * 7 6 5 9 9 C 1.34234 * 116.99548 * 179.97438 * 8 7 6 10 10 O 1.20829 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99687 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.46976 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47249 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47249 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46951 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99719 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00209 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47003 * 119.99987 * 19 17 15 22 22 H 1.48498 * 109.47275 * 239.99794 * 19 17 15 23 23 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 24 24 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 25 25 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 26 26 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 27 27 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 28 28 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 30 30 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 31 31 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 32 32 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 33 33 H 1.08996 * 109.47464 * 300.00221 * 11 9 8 34 34 H 1.09002 * 109.47197 * 60.00914 * 11 9 8 35 35 H 1.09001 * 109.47464 * 300.00393 * 12 11 9 36 36 H 1.09007 * 109.47056 * 60.00182 * 12 11 9 37 37 H 1.09001 * 109.47310 * 300.00612 * 13 12 11 38 38 H 1.09007 * 109.46842 * 60.00174 * 13 12 11 39 39 H 1.08996 * 109.47013 * 300.00387 * 14 13 12 40 40 H 1.08994 * 109.46741 * 60.00139 * 14 13 12 41 41 H 0.96998 * 119.99923 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 8 6.3121 -2.8403 1.4684 9 6 6.7880 -3.2115 2.6673 10 8 6.2646 -2.8046 3.6775 11 6 7.9745 -4.1365 2.7534 12 6 8.3105 -4.3995 4.2228 13 6 9.5147 -5.3393 4.3103 14 6 9.8504 -5.6027 5.7796 15 6 11.0369 -6.5278 5.8657 16 1 11.5045 -6.8918 4.9628 17 6 11.5248 -6.9104 7.0972 18 7 10.9551 -6.4675 8.1968 19 14 12.9951 -8.0577 7.2040 20 1 13.4492 -8.4092 5.8346 21 1 14.0985 -7.3817 7.9327 22 1 12.6068 -9.2937 7.9298 23 8 2.2923 -1.0895 0.0044 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9666 2.1203 -0.0045 28 1 4.5212 1.2433 0.0076 29 1 4.5127 -2.5646 -0.4964 30 1 5.6061 -1.1601 -0.4949 31 1 5.4244 -1.0212 1.9742 32 1 4.3311 -2.4258 1.9727 33 1 7.7365 -5.0795 2.2612 34 1 8.8310 -3.6757 2.2614 35 1 8.5483 -3.4567 4.7155 36 1 7.4539 -4.8605 4.7146 37 1 9.2765 -6.2820 3.8177 38 1 10.3715 -4.8786 3.8184 39 1 10.0885 -4.6602 6.2725 40 1 8.9935 -6.0634 6.2710 41 1 11.2986 -6.7363 9.0631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343900830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:09 Heat of formation + Delta-G solvation = -108.139709 kcal Electronic energy + Delta-G solvation = -20174.026890 eV Core-core repulsion = 16826.689118 eV Total energy + Delta-G solvation = -3347.337772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.96323 -40.45172 -36.94377 -34.97650 -34.05439 -33.52515 -32.67548 -31.09202 -29.87053 -26.80948 -25.65732 -23.53152 -22.49373 -22.06911 -20.66310 -20.39360 -20.02152 -17.67450 -16.89171 -16.72255 -16.63833 -16.17443 -15.97628 -15.18527 -14.67782 -14.43722 -14.16973 -13.67983 -13.54686 -13.28333 -13.17325 -13.01834 -12.68640 -12.52991 -12.22736 -12.11411 -11.83659 -11.70676 -11.65055 -11.01926 -10.72753 -10.58407 -10.54607 -10.46479 -10.38020 -10.22589 -9.65017 -9.29047 -9.00851 -8.66243 -8.31833 -5.96421 -3.98959 1.27447 2.17971 2.28273 2.37204 2.81272 3.32983 3.40277 3.44296 4.22896 4.44866 4.48450 4.54366 4.61136 4.67903 4.87005 4.94108 5.00478 5.03583 5.22148 5.25523 5.27397 5.30662 5.39205 5.46251 5.47825 5.65021 5.74479 5.80297 6.05871 6.16904 6.19448 6.37895 6.47628 6.76889 6.80350 6.95056 7.16414 7.72643 7.80084 7.87211 8.04530 8.46244 9.08893 9.64948 11.14924 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.059400 B = 0.001931 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.266062 B =14493.826837 C =14667.183889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.213 4.213 4 C -0.197 4.197 5 C -0.015 4.015 6 C -0.036 4.036 7 C 0.069 3.931 8 O -0.362 6.362 9 C 0.461 3.539 10 O -0.504 6.504 11 C -0.111 4.111 12 C -0.109 4.109 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 O -0.173 6.173 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.484 14.052 -20.284 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.232 4.232 4 C -0.216 4.216 5 C -0.065 4.065 6 C -0.074 4.074 7 C -0.005 4.005 8 O -0.279 6.279 9 C 0.304 3.696 10 O -0.390 6.390 11 C -0.148 4.148 12 C -0.147 4.147 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 O -0.070 6.070 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.761 13.888 -19.794 30.605 hybrid contribution 0.743 -0.246 0.269 0.827 sum -18.018 13.642 -19.525 29.866 Atomic orbital electron populations 1.20327 0.84995 1.04221 1.03564 1.22500 0.94089 0.84112 1.05529 1.21590 0.92651 0.99499 1.09472 1.21642 0.98455 0.93756 1.07743 1.21963 0.82851 0.94237 1.07475 1.19920 0.91920 0.99003 0.96515 1.22926 0.87281 0.93640 0.96702 1.86475 1.45853 1.61090 1.34526 1.24235 0.84870 0.79813 0.80698 1.90684 1.58552 1.53200 1.36592 1.21616 0.93214 0.98057 1.01949 1.21587 1.00208 1.01395 0.91475 1.21652 0.94743 0.96965 1.01393 1.19108 0.96444 0.96817 0.89445 1.21316 1.14100 1.28289 0.92147 0.92615 1.25048 0.97154 0.96484 0.95932 1.69985 1.41064 1.44970 0.97438 0.86544 0.82741 0.80709 0.78037 1.19753 1.21057 1.21055 1.83962 1.16285 1.35200 1.71544 0.90033 0.90425 0.89249 0.83360 0.83200 0.88782 0.87522 0.90697 0.90900 0.87801 0.87791 0.91530 0.91542 0.93182 0.93176 0.96527 0.96528 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.42 36.00 0.38 0.01 16 2 C -0.01 -0.10 7.32 -35.63 -0.26 -0.37 16 3 C -0.21 -1.79 10.81 -39.71 -0.43 -2.22 16 4 C -0.20 -1.75 10.81 -39.70 -0.43 -2.18 16 5 C -0.02 -0.15 6.58 -35.62 -0.23 -0.38 16 6 C -0.04 -0.30 6.13 -27.88 -0.17 -0.47 16 7 C 0.07 0.72 5.45 37.16 0.20 0.93 16 8 O -0.36 -4.39 10.22 -39.27 -0.40 -4.79 16 9 C 0.46 6.60 7.96 36.00 0.29 6.89 16 10 O -0.50 -8.88 15.73 -18.75 -0.29 -9.18 16 11 C -0.11 -1.47 5.81 -27.88 -0.16 -1.63 16 12 C -0.11 -1.89 4.50 -26.73 -0.12 -2.01 16 13 C -0.11 -2.22 5.15 -26.73 -0.14 -2.35 16 14 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 O -0.17 -1.82 10.65 5.72 0.06 -1.76 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -33.88 355.42 -7.92 -41.79 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.72 Total: -4.42 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.63 Total: -17.15 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.64 Total: -15.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.88 -7.92 -41.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343900830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.346 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds