Wall clock time and date at job start Tue Mar 31 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 O 1.45201 * 109.46718 * 179.97438 * 7 6 5 9 9 C 1.34234 * 116.99548 * 179.97438 * 8 7 6 10 10 O 1.20829 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99687 * 179.97438 * 9 8 7 12 12 C 1.53004 * 109.46976 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47249 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47249 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46951 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99889 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99719 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00209 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47003 * 119.99987 * 19 17 15 22 22 H 1.48498 * 109.47275 * 239.99794 * 19 17 15 23 23 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 24 24 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 25 25 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 26 26 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 27 27 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 28 28 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 30 30 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 31 31 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 32 32 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 33 33 H 1.08996 * 109.47464 * 300.00221 * 11 9 8 34 34 H 1.09002 * 109.47197 * 60.00914 * 11 9 8 35 35 H 1.09001 * 109.47464 * 300.00393 * 12 11 9 36 36 H 1.09007 * 109.47056 * 60.00182 * 12 11 9 37 37 H 1.09001 * 109.47310 * 300.00612 * 13 12 11 38 38 H 1.09007 * 109.46842 * 60.00174 * 13 12 11 39 39 H 1.08996 * 109.47013 * 300.00387 * 14 13 12 40 40 H 1.08994 * 109.46741 * 60.00139 * 14 13 12 41 41 H 0.96998 * 119.99923 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 8 6.3121 -2.8403 1.4684 9 6 6.7880 -3.2115 2.6673 10 8 6.2646 -2.8046 3.6775 11 6 7.9745 -4.1365 2.7534 12 6 8.3105 -4.3995 4.2228 13 6 9.5147 -5.3393 4.3103 14 6 9.8504 -5.6027 5.7796 15 6 11.0369 -6.5278 5.8657 16 1 11.5045 -6.8918 4.9628 17 6 11.5248 -6.9104 7.0972 18 7 10.9551 -6.4675 8.1968 19 14 12.9951 -8.0577 7.2040 20 1 13.4492 -8.4092 5.8346 21 1 14.0985 -7.3817 7.9327 22 1 12.6068 -9.2937 7.9298 23 8 2.2923 -1.0895 0.0044 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9666 2.1203 -0.0045 28 1 4.5212 1.2433 0.0076 29 1 4.5127 -2.5646 -0.4964 30 1 5.6061 -1.1601 -0.4949 31 1 5.4244 -1.0212 1.9742 32 1 4.3311 -2.4258 1.9727 33 1 7.7365 -5.0795 2.2612 34 1 8.8310 -3.6757 2.2614 35 1 8.5483 -3.4567 4.7155 36 1 7.4539 -4.8605 4.7146 37 1 9.2765 -6.2820 3.8177 38 1 10.3715 -4.8786 3.8184 39 1 10.0885 -4.6602 6.2725 40 1 8.9935 -6.0634 6.2710 41 1 11.2986 -6.7363 9.0631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343900830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:08 Heat of formation + Delta-G solvation = -126.282482 kcal Electronic energy + Delta-G solvation = -20174.813620 eV Core-core repulsion = 16826.689118 eV Total energy + Delta-G solvation = -3348.124502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.61675 -41.56786 -38.04558 -36.63299 -34.81909 -34.60953 -34.14166 -31.92209 -31.34448 -28.02391 -26.93347 -24.74686 -23.73272 -22.73729 -22.05868 -21.48585 -21.08354 -18.76142 -18.38919 -17.90978 -17.56145 -17.33124 -16.93540 -16.45529 -16.35779 -15.41671 -15.19808 -14.63014 -14.55802 -14.21144 -13.86860 -13.81167 -13.79147 -13.63961 -13.57266 -13.34757 -12.98291 -12.86553 -12.84416 -12.55810 -12.32315 -12.19027 -12.18177 -11.65904 -11.63785 -11.37511 -11.28744 -11.04356 -10.88433 -10.54800 -9.29724 -8.18338 -6.30028 0.60247 1.15735 1.41389 1.42045 1.43995 1.55664 1.66833 2.04218 2.42657 3.14792 3.55155 3.73900 3.78007 3.88394 3.99083 4.06351 4.07853 4.10549 4.25609 4.46314 4.52349 4.62986 4.65893 4.68793 4.75559 4.79773 4.83391 4.87477 4.91356 5.05884 5.15404 5.23555 5.27856 5.33407 5.41855 5.57766 5.58716 5.78755 5.89169 6.15855 6.26148 6.69802 6.88893 7.39673 8.94003 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.059400 B = 0.001931 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.266062 B =14493.826837 C =14667.183889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.024 4.024 3 C -0.227 4.227 4 C -0.203 4.203 5 C -0.036 4.036 6 C -0.026 4.026 7 C 0.068 3.932 8 O -0.351 6.351 9 C 0.465 3.535 10 O -0.545 6.545 11 C -0.101 4.101 12 C -0.102 4.102 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.280 1.280 23 O -0.194 6.194 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.064 0.936 39 H -0.013 1.013 40 H -0.014 1.014 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 13.906 -22.547 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.246 4.246 4 C -0.222 4.222 5 C -0.086 4.086 6 C -0.063 4.063 7 C -0.006 4.006 8 O -0.268 6.268 9 C 0.310 3.690 10 O -0.435 6.435 11 C -0.138 4.138 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.206 1.206 23 O -0.092 6.092 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.186 0.814 28 H 0.183 0.817 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.204 13.746 -22.098 31.760 hybrid contribution 0.487 -0.135 0.981 1.104 sum -17.717 13.611 -21.117 30.742 Atomic orbital electron populations 1.20502 0.82700 1.05129 1.04764 1.23245 0.95586 0.83809 1.04729 1.21944 0.92558 1.00528 1.09556 1.21982 0.99393 0.93851 1.07010 1.22232 0.82951 0.94831 1.08554 1.19896 0.92168 0.99437 0.94764 1.23049 0.86199 0.92908 0.98468 1.86459 1.46137 1.61055 1.33114 1.24403 0.84680 0.79254 0.80622 1.90682 1.59918 1.54855 1.38028 1.21512 0.93867 0.99473 0.98968 1.21369 0.98323 0.99685 0.94578 1.21442 0.96425 0.98484 0.97002 1.19075 0.94896 0.94768 0.93297 1.21798 1.14748 1.28560 0.92745 0.91495 1.26081 1.00517 0.98305 0.95529 1.70135 1.42984 1.46538 0.98165 0.85339 0.78471 0.78133 0.78724 1.18092 1.20544 1.20565 1.83951 1.16923 1.36329 1.72033 0.88592 0.90354 0.87474 0.81434 0.81703 0.88079 0.85488 0.91047 0.92217 0.85072 0.84896 0.93147 0.93278 0.91777 0.91688 0.99492 0.99547 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 71.23 0.74 0.10 16 2 C -0.02 -0.40 7.32 24.83 0.18 -0.21 16 3 C -0.23 -3.59 10.81 22.19 0.24 -3.35 16 4 C -0.20 -3.44 10.81 22.19 0.24 -3.20 16 5 C -0.04 -0.67 6.58 24.84 0.16 -0.51 16 6 C -0.03 -0.39 6.13 29.85 0.18 -0.20 16 7 C 0.07 1.39 5.45 71.98 0.39 1.78 16 8 O -0.35 -7.94 10.22 -51.46 -0.53 -8.47 16 9 C 0.47 12.82 7.96 71.23 0.57 13.39 16 10 O -0.55 -19.43 15.73 21.95 0.35 -19.08 16 11 C -0.10 -2.44 5.81 29.85 0.17 -2.26 16 12 C -0.10 -3.49 4.50 30.60 0.14 -3.36 16 13 C -0.10 -3.79 5.15 30.60 0.16 -3.63 16 14 C 0.02 0.90 4.97 29.85 0.15 1.05 16 15 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 16 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 18 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 19 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 O -0.19 -4.05 10.65 -2.45 -0.03 -4.08 16 24 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 28 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.13 2.51 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.86 355.42 7.12 -67.74 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.99 Total: 6.77 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.02 Total: -31.17 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.28 Total: -58.38 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.21 Total: -31.63 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.86 7.12 -67.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343900830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.542 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds